mRNA_D-dudresnayi_contig10540.590.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10540.590.1
Unique NamemRNA_D-dudresnayi_contig10540.590.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10540.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10540contigD-dudresnayi_contig10540:1054..1680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size629
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.3274064-UTR-D-dudresnayi_contig10540:1053..10981622927557.3274064-UTR-D-dudresnayi_contig10540:1053..1098Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10540 1054..1098 +
1690556806.2791731-UTR-D-dudresnayi_contig10540:1053..10981690556806.2791731-UTR-D-dudresnayi_contig10540:1053..1098Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10540 1054..1098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.3385727-CDS-D-dudresnayi_contig10540:1098..16801622927557.3385727-CDS-D-dudresnayi_contig10540:1098..1680Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 1099..1680 +
1690556806.286636-CDS-D-dudresnayi_contig10540:1098..16801690556806.286636-CDS-D-dudresnayi_contig10540:1098..1680Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 1099..1680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10540.590.1prot_D-dudresnayi_contig10540.590.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10540 1099..1680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10540.590.1

>prot_D-dudresnayi_contig10540.590.1 ID=prot_D-dudresnayi_contig10540.590.1|Name=mRNA_D-dudresnayi_contig10540.590.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=194bp
MESGKSVDDFPDIFASFFEASREVPIRPPNGITGEFTGILNPSNSAPIFR
GPRGGYFYCNSDNSKRYLRRGEFTVFQTAAQIEDSFSSLETTREILYNRN
EPTDPLQVERANQQWQGLLEPFRACLWQNQLNAHRVVFQAAAFQTVALPA
AAPQAVQPSILPPNGFPGTYTGHFNRNGSPIFRGPRGGIFYVTA
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mRNA from alignment at D-dudresnayi_contig10540:1054..1680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10540.590.1 ID=mRNA_D-dudresnayi_contig10540.590.1|Name=mRNA_D-dudresnayi_contig10540.590.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:1054..1680+ (Desmarestia dudresnayi DdudBR16 monoicous)
TATAGAGTAGTAATCTAAATAGCTCAATAGTTGTAAAAGTAAACAATGGA
GTCAGGCAAGTCCGTTGATGATTTCCCAGACATTTTTGCATCATTTTTTG
AAGCTTCACGTGAAGTTCCTATCCGTCCTCCGAATGGGATCACTGGAGAA
TTTACAGGAATATTAAATCCTAGCAATTCTGCCCCCATATTTCGGGGACC
TAGAGGTGGATATTTCTACTGTAATTCAGATAACAGTAAACGCTACTTGA
GGCGTGGTGAGTTTACTGTTTTTCAAACTGCTGCTCAGATCGAAGATTCA
TTCTCTAGTCTGGAAACTACACGCGAGATTCTATATAATAGAAATGAACC
TACCGATCCACTTCAAGTGGAGCGTGCTAACCAGCAGTGGCAAGGTCTAC
TAGAACCATTCCGCGCTTGCCTATGGCAAAACCAGTTGAACGCTCATCGT
GTTGTCTTTCAGGCTGCCGCTTTTCAGACTGTTGCTCTCCCAGCTGCTGC
TCCACAAGCCGTCCAGCCTTCAATTCTCCCTCCGAATGGCTTTCCAGGTA
CTTATACAGGACACTTTAATAGGAATGGTTCACCTATTTTTAGAGGTCCC
AGAGGTGGAATTTTCTATGTTACTGCA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10540:1054..1680+

>mRNA_D-dudresnayi_contig10540.590.1 ID=mRNA_D-dudresnayi_contig10540.590.1|Name=mRNA_D-dudresnayi_contig10540.590.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:1054..1680+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGTCAGGCAAGTCCGTTGATGATTTCCCAGACATTTTTGCATCATT
TTTTGAAGCTTCACGTGAAGTTCCTATCCGTCCTCCGAATGGGATCACTG
GAGAATTTACAGGAATATTAAATCCTAGCAATTCTGCCCCCATATTTCGG
GGACCTAGAGGTGGATATTTCTACTGTAATTCAGATAACAGTAAACGCTA
CTTGAGGCGTGGTGAGTTTACTGTTTTTCAAACTGCTGCTCAGATCGAAG
ATTCATTCTCTAGTCTGGAAACTACACGCGAGATTCTATATAATAGAAAT
GAACCTACCGATCCACTTCAAGTGGAGCGTGCTAACCAGCAGTGGCAAGG
TCTACTAGAACCATTCCGCGCTTGCCTATGGCAAAACCAGTTGAACGCTC
ATCGTGTTGTCTTTCAGGCTGCCGCTTTTCAGACTGTTGCTCTCCCAGCT
GCTGCTCCACAAGCCGTCCAGCCTTCAATTCTCCCTCCGAATGGCTTTCC
AGGTACTTATACAGGACACTTTAATAGGAATGGTTCACCTATTTTTAGAG
GTCCCAGAGGTGGAATTTTCTATGTTACTGCAATGGAGTCAGGCAAGTCC
GTTGATGATTTCCCAGACATTTTTGCATCATTTTTTGAAGCTTCACGTGA
AGTTCCTATCCGTCCTCCGAATGGGATCACTGGAGAATTTACAGGAATAT
TAAATCCTAGCAATTCTGCCCCCATATTTCGGGGACCTAGAGGTGGATAT
TTCTACTGTAATTCAGATAACAGTAAACGCTACTTGAGGCGTGGTGAGTT
TACTGTTTTTCAAACTGCTGCTCAGATCGAAGATTCATTCTCTAGTCTGG
AAACTACACGCGAGATTCTATATAATAGAAATGAACCTACCGATCCACTT
CAAGTGGAGCGTGCTAACCAGCAGTGGCAAGGTCTACTAGAACCATTCCG
CGCTTGCCTATGGCAAAACCAGTTGAACGCTCATCGTGTTGTCTTTCAGG
CTGCCGCTTTTCAGACTGTTGCTCTCCCAGCTGCTGCTCCACAAGCCGTC
CAGCCTTCAATTCTCCCTCCGAATGGCTTTCCAGGTACTTATACAGGACA
CTTTAATAGGAATGGTTCACCTATTTTTAGAGGTCCCAGAGGTGGAATTT
TCTATGTTACTGCA
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