mRNA_D-dudresnayi_contig10534.584.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous
Overview
Homology
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 193 bits (491), Expect = 8.160e-55 Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = 2 Query: 2 APALSNKPGQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSFSAD 367 A A+ PGQMWVDK+KP +SS VIGHAGQVKKLK WLQNWE WHL G K PTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHV ELNASDTR+K SLS ELASVIGN VLSF+A+ Sbjct: 435 AAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLK--GAKAPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTAN 554
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.200e-27 Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 2 Query: 8 ALSNKPGQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGKDNPG----ARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSFSADSG 373 A+S++PGQ+W DK++P+ SD++GH G V+KL WL N+E VK GK G RA L+SG PG+GK++ AT+VA+ +G+ VTE NASDTR+K S+ L V+ N VLSF + +G Sbjct: 41 AVSSEPGQLWADKYRPQKPSDLLGHTGDVRKLTEWLNNFEA--RAAPAVKGAKGKGKAGDDMHKRAVLISGPPGIGKTTAATIVAKSLGFEVTEFNASDTRSKKSMEEGLKDVLSNTVLSFGSKAG 164
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO) HSP 1 Score: 114 bits (284), Expect = 8.330e-27 Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 2 Query: 32 MWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPP---TGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSFSA 364 MWVD++KP + D++G+ + +L WL++WE H+ K KP NPGARA LLSG PG+GKS+ A LVAR +GY V E+NASDTR+K SL LA V+GN ++F A Sbjct: 296 MWVDRYKPASVEDLVGNKALIGRLVAWLKDWEAIHIKKTKPKPAFDARAGTNPGARAVLLSGPPGIGKSTAALLVARAVGYQVQEMNASDTRSKRSLKETLAEVVGNRAITFFA 409
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A7S2GGJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GGJ1_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.760e-26 Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 26 GQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELA 328 GQ+WVDK+ P ++ +++G+ VKKLK WL W++ HL K + K+NPGA+AAL+SG PG+GKS+ A L+AR GY V ELNASDTR++ ++ +LA Sbjct: 18 GQLWVDKYAPSSAEELLGNVDIVKKLKNWLLQWDQVHLHKTKTVGYS-KENPGAKAALMSGPPGIGKSTAANLIARLAGYDVLELNASDTRSRRAIKEQLA 117
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A7S2P963_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P963_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.310e-26 Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 2 Query: 26 GQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSF-SADSGKGKG 385 G +W D H P+++ D++G+A VKKL WL WE+ +LG K + G +AALLSG PG+GK++TATLV +E G V ELNASDTR+KSSL L V G VLSF S ++ KG G Sbjct: 228 GMLWADAHAPQSTRDILGNAEAVKKLSSWLNRWEQNNLGS--------KKHNGPKAALLSGPPGIGKTTTATLVCKESGRDVLELNASDTRSKSSLKEMLGDVTGTKVLSFTSKNTKKGSG 340
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A6P7UYZ5_IXOSC (Replication factor C subunit 1 n=5 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7UYZ5_IXOSC) HSP 1 Score: 112 bits (280), Expect = 2.920e-26 Identity = 61/123 (49.59%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 11 LSNKPGQMWVDKHKPRTSSDVIGHAGQVK---KLKFWLQNWERWHLGKFGVKPPTGK------DNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVL 352 L + GQMWVD+++P+T+ +IG G KL+ WLQNW H + G K P K D +AALLSG PGVGK++TA LVARE G+ V ELNASDTR+K SL E+A ++GN L Sbjct: 503 LPSAQGQMWVDRYRPQTTKQIIGQQGDKSNCHKLRLWLQNW---HKSRAGPKRPPPKWXXXXXDGSAFKAALLSGAPGVGKTTTANLVAREAGFSVLELNASDTRSKKSLKQEVAELLGNQTL 622
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A0N7L788_PLAHL (Replication factor C subunit 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L788_PLAHL) HSP 1 Score: 112 bits (279), Expect = 3.920e-26 Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 2 Query: 29 QMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGK--DNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSFSADSGKGKGK 388 ++W DK+KP++ +D+IG+ KKLK WL +WE H+ K P T K +N GA LLSG PG+GK++ A LVARE G+ TE+NASDTR+K L +L V+G L F + GK K K Sbjct: 290 ELWTDKYKPKSLNDMIGNIELGKKLKTWLLDWEAMHVKKNKKVPYTTKLTENRGAMTVLLSGPPGIGKTTIANLVARECGFECTEMNASDTRSKKMLQSDLKDVLGTQALQFGSPLGKSKDK 411
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: B7P7N8_IXOSC (Replication factor C subunit 1 (Fragment) n=3 Tax=Ixodes TaxID=6944 RepID=B7P7N8_IXOSC) HSP 1 Score: 111 bits (278), Expect = 5.170e-26 Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 26 GQMWVDKHKPRTSSDVIGHAGQVK---KLKFWLQNWERWHLGKFGVKPPTGK------DNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVL 352 GQMWVD+++P+T+ +IG G KL+ WLQNW H + G K P K D +AALLSG PGVGK++TA LVARE G+ V ELNASDTR+K SL E+A ++GN L Sbjct: 188 GQMWVDRYRPQTTKQIIGQQGDKSNCHKLRLWLQNW---HKSRAGPKRPPPKWXXXXXDGSAFKAALLSGAPGVGKTTTANLVAREAGFSVLELNASDTRSKKSLKQEVAELLGNQTL 302
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A7S4IHD5_9STRA (Replication factor C subunit 1 (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHD5_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.470e-26 Identity = 64/128 (50.00%), Postives = 81/128 (63.28%), Query Frame = 2 Query: 14 SNKPGQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWER-WHLGKFGVKPPTGKDNPGAR-AALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSF--SADSGKGKG 385 S P +W DK+ PRT+ D++G+ V KL WL WE +++ G K N G + AALLSG PG+GK++TATLVARE G V ELNASD R+K SL+ L V G+ VL+F SA GKGKG Sbjct: 594 SGDPNALWADKYAPRTTQDILGNRDAVTKLTNWLNRWESTFNVPSSGGKKSFSNPNGGPKKAALLSGPPGIGKTTTATLVARESGRDVLELNASDARSKKSLTENLGDVTGSQVLNFAPSAKGGKGKG 721
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Match: A0A7S1CUB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUB5_9STRA) HSP 1 Score: 105 bits (261), Expect = 6.170e-26 Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 2 Query: 23 PGQMWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWE-RWHLGKFGVKPPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSIELASVIGNHVLSFSADSGK 376 P +W DK+ P++S D++G+ V KL WL WE ++ K VK T + P +AALLSG PG+GK++TATL+AR+ G V ELNASD R+K +L+ L V G+ VLSF+ S K Sbjct: 57 PNALWADKYAPKSSQDILGNKTNVDKLSRWLDRWEGTFNNPKMKVKSLTAPNGP-RKAALLSGPPGIGKTTTATLIARQSGRDVLELNASDARSKKALTEALGDVTGSQVLSFANQSSK 174 The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10534.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10534.584.1 >prot_D-dudresnayi_contig10534.584.1 ID=prot_D-dudresnayi_contig10534.584.1|Name=mRNA_D-dudresnayi_contig10534.584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=119bp MWVDKHKPRTSSDVIGHAGQVKKLKFWLQNWERWHLGKFGVKPPTGKDNPback to top mRNA from alignment at D-dudresnayi_contig10534:1283..2981+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dudresnayi_contig10534.584.1 ID=mRNA_D-dudresnayi_contig10534.584.1|Name=mRNA_D-dudresnayi_contig10534.584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at D-dudresnayi_contig10534:1283..2981+ (Desmarestia dudresnayi DdudBR16 monoicous)back to top Coding sequence (CDS) from alignment at D-dudresnayi_contig10534:1283..2981+ >mRNA_D-dudresnayi_contig10534.584.1 ID=mRNA_D-dudresnayi_contig10534.584.1|Name=mRNA_D-dudresnayi_contig10534.584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at D-dudresnayi_contig10534:1283..2981+ (Desmarestia dudresnayi DdudBR16 monoicous)back to top |