mRNA_D-dudresnayi_contig10528.579.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10528.579.1
Unique NamemRNA_D-dudresnayi_contig10528.579.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: A0A7S3HER6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HER6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.920e-54
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 MHDPEVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQKMV 255
            MHDPEVL+NARRRGLSKWDLDVLPSFVYSSTEDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQKMV
Sbjct:  617 MHDPEVLNNARRRGLSKWDLDVLPSFVYSSTEDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQKMV 701          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: A0A482UT08_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UT08_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 3.460e-33
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   40 GLSKWDLDVLPSFVYSSTEDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQKMV 255
            GLSK DL+ LP+FVY+S E+V N+DC ICLG F++GEML  LPCDKKHSFHA CIR WL RQNSCPLCQK+V
Sbjct:   24 GLSKIDLETLPTFVYTSREEVVNSDCSICLGGFDMGEMLLSLPCDKKHSFHAQCIRQWLTRQNSCPLCQKLV 95          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: A0A8B8CZT7_CRAVI (uncharacterized RING finger protein ECU07_0330-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CZT7_CRAVI)

HSP 1 Score: 70.9 bits (172), Expect = 1.850e-12
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSS-----TEDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E +   + RG+ K +++ LP   +SS     TED     C +CL  F+ G+ L  LPC  KH +HA C++ WL+R  SCP+C+
Sbjct:  301 ERIGEVKNRGMEKKEIEALPVKTFSSKTKLFTEDHEGPGCRVCLSSFKSGDKLCTLPC--KHDYHAACVKEWLKRNASCPICR 381          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: UPI001458A973 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Praja-1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458A973)

HSP 1 Score: 69.7 bits (169), Expect = 4.970e-12
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDV-----NNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L   + RGL   +L  LP  +Y+    V     N A+C +CL  +  GE +  LPC  KH FH  C++ WL+R  SCP+C+
Sbjct:  323 EELGEVKSRGLGNKELGSLPLRLYNKRTKVSGDGENQAECRVCLNGYSAGESVCTLPCKGKHEFHRKCVKEWLKRNASCPICR 405          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: B3M1N2_DROAN (Uncharacterized protein, isoform A n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3M1N2_DROAN)

HSP 1 Score: 69.3 bits (168), Expect = 7.430e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNAD---CCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGL++ ++D LPS+ Y+   DV+N D   C +C+  FEL ++L  LPC   H FHA C+  WL    +CP+C+
Sbjct:  720 ERLGEAKPRGLTRNEIDQLPSYKYNP--DVHNGDQSSCVVCMCDFELRQLLRVLPCS--HEFHAKCVDKWLRSNRTCPICR 796          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: A0A0P8Y0S9_DROAN (Uncharacterized protein, isoform B n=5 Tax=ananassae subgroup TaxID=32347 RepID=A0A0P8Y0S9_DROAN)

HSP 1 Score: 69.3 bits (168), Expect = 7.510e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNAD---CCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGL++ ++D LPS+ Y+   DV+N D   C +C+  FEL ++L  LPC   H FHA C+  WL    +CP+C+
Sbjct: 1033 ERLGEAKPRGLTRNEIDQLPSYKYNP--DVHNGDQSSCVVCMCDFELRQLLRVLPCS--HEFHAKCVDKWLRSNRTCPICR 1109          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: UPI000A1D1D90 (LOW QUALITY PROTEIN: homeobox protein 2 n=1 Tax=Drosophila serrata TaxID=7274 RepID=UPI000A1D1D90)

HSP 1 Score: 69.3 bits (168), Expect = 7.520e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNAD---CCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGL++ ++D LPS+ Y+   DV+N D   C +C+  FEL ++L  LPC   H FHA C+  WL    +CP+C+
Sbjct: 1044 ERLGEAKPRGLTRNEIDQLPSYKYNP--DVHNGDQSSCVVCMCDFELRQLLRVLPCS--HEFHAKCVDKWLRSNRTCPICR 1120          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: A0A672H0L0_SALFA (RING-type domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H0L0_SALFA)

HSP 1 Score: 65.5 bits (158), Expect = 7.870e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSST--EDVNNADCCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGL+K D++ LPS+ ++    +   +  C +C+  FE  ++L  LPC+  H FHA C+  WL+   +CP+CQ
Sbjct:   28 ERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQHCKCVVCMCDFESRQLLRVLPCN--HEFHAKCVDKWLKANRTCPICQ 105          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: B4NB27_DROWI (RING-type domain-containing protein n=2 Tax=Drosophila willistoni TaxID=7260 RepID=B4NB27_DROWI)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNAD---CCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGLS+ ++D LPS+ Y+   +V+N D   C +C+  FEL ++L  LPC   H FHA C+  WL    +CP+C+
Sbjct:  716 ERLGEAKPRGLSRNEIDQLPSYKYNP--EVHNGDQTSCVVCMCDFELRQLLRVLPCS--HEFHAKCVDKWLRSNRTCPICR 792          
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Match: UPI000C26C5AC (uncharacterized protein DDB_G0283357 isoform X1 n=1 Tax=Drosophila willistoni TaxID=7260 RepID=UPI000C26C5AC)

HSP 1 Score: 68.9 bits (167), Expect = 1.030e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 EVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNAD---CCICLGCFELGEMLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQ 246
            E L  A+ RGLS+ ++D LPS+ Y+   +V+N D   C +C+  FEL ++L  LPC   H FHA C+  WL    +CP+C+
Sbjct: 1018 ERLGEAKPRGLSRNEIDQLPSYKYNP--EVHNGDQTSCVVCMCDFELRQLLRVLPCS--HEFHAKCVDKWLRSNRTCPICR 1094          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10528.579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HER6_9STRA1.920e-5498.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482UT08_9ARCH3.460e-3373.61RING-type domain-containing protein n=1 Tax=archae... [more]
A0A8B8CZT7_CRAVI1.850e-1238.55uncharacterized RING finger protein ECU07_0330-lik... [more]
UPI001458A9734.970e-1238.55LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase P... [more]
B3M1N2_DROAN7.430e-1241.98Uncharacterized protein, isoform A n=3 Tax=ananass... [more]
A0A0P8Y0S9_DROAN7.510e-1241.98Uncharacterized protein, isoform B n=5 Tax=ananass... [more]
UPI000A1D1D907.520e-1241.98LOW QUALITY PROTEIN: homeobox protein 2 n=1 Tax=Dr... [more]
A0A672H0L0_SALFA7.870e-1237.50RING-type domain-containing protein n=1 Tax=Salari... [more]
B4NB27_DROWI1.010e-1141.98RING-type domain-containing protein n=2 Tax=Drosop... [more]
UPI000C26C5AC1.030e-1141.98uncharacterized protein DDB_G0283357 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10528contigD-dudresnayi_contig10528:1838..2095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog227086.JGI_V11_83838
KEGG koko:K19045
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.00383-CDS-D-dudresnayi_contig10528:1837..20951622927556.00383-CDS-D-dudresnayi_contig10528:1837..2095Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10528 1838..2095 -
1690556805.7717178-CDS-D-dudresnayi_contig10528:1837..20951690556805.7717178-CDS-D-dudresnayi_contig10528:1837..2095Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10528 1838..2095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10528.579.1prot_D-dudresnayi_contig10528.579.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10528 1838..2095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10528.579.1

>prot_D-dudresnayi_contig10528.579.1 ID=prot_D-dudresnayi_contig10528.579.1|Name=mRNA_D-dudresnayi_contig10528.579.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=86bp
MHDPEVLSNARRRGLSKWDLDVLPSFVYSSTEDVNNADCCICLGCFELGE
MLTCLPCDKKHSFHAGCIRSWLERQNSCPLCQKMV*
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mRNA from alignment at D-dudresnayi_contig10528:1838..2095-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10528.579.1 ID=mRNA_D-dudresnayi_contig10528.579.1|Name=mRNA_D-dudresnayi_contig10528.579.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at D-dudresnayi_contig10528:1838..2095- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGACCCGGAAGTACTGAGTAATGCCCGTCGCCGCGGTCTCTCGAA GTGGGATCTAGATGTCCTCCCTTCCTTCGTCTATAGCTCTACAGAGGATG TGAATAACGCTGACTGCTGTATCTGTCTCGGATGCTTTGAATTAGGTGAG ATGTTAACCTGCTTACCGTGCGATAAAAAGCATAGTTTCCATGCGGGGTG CATACGATCATGGTTAGAGAGACAGAATTCCTGTCCTTTATGTCAGAAAA TGGTTTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10528:1838..2095-

>mRNA_D-dudresnayi_contig10528.579.1 ID=mRNA_D-dudresnayi_contig10528.579.1|Name=mRNA_D-dudresnayi_contig10528.579.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at D-dudresnayi_contig10528:1838..2095- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGACCCGGAAGTACTGAGTAATGCCCGTCGCCGCGGTCTCTCGAA
GTGGGATCTAGATGTCCTCCCTTCCTTCGTCTATAGCTCTACAGAGGATG
TGAATAACGCTGACTGCTGTATCTGTCTCGGATGCTTTGAATTAGGTGAG
ATGTTAACCTGCTTACCGTGCGATAAAAAGCATAGTTTCCATGCGGGGTG
CATACGATCATGGTTAGAGAGACAGAATTCCTGTCCTTTATGTCAGAAAA
TGGTTTAAATGCATGACCCGGAAGTACTGAGTAATGCCCGTCGCCGCGGT
CTCTCGAAGTGGGATCTAGATGTCCTCCCTTCCTTCGTCTATAGCTCTAC
AGAGGATGTGAATAACGCTGACTGCTGTATCTGTCTCGGATGCTTTGAAT
TAGGTGAGATGTTAACCTGCTTACCGTGCGATAAAAAGCATAGTTTCCAT
GCGGGGTGCATACGATCATGGTTAGAGAGACAGAATTCCTGTCCTTTATG
TCAGAAAATGGTTTAA
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