mRNA_D-dudresnayi_contig10523.573.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10523.573.1
Unique NamemRNA_D-dudresnayi_contig10523.573.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A482SEV0_9ARCH (Tim10/DDP family zinc finger protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEV0_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 7.790e-14
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3
Query:    6 SHKKNMSWFGFGGSDKDNKPTGGA----MKIDDFDTSNSTHFDNTPSFASSXXXXXXXXXXXXXXXXXXXKA--VIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQ 374
            S    MSWFGFGG D        A    ++IDDFD    T F + PS + S                   +   + Q VM KLT+ +F+ CVTKP +SLS+SE++CI + VGK++D S+L++ R+Q  Q
Sbjct:   80 SQLNTMSWFGFGGGDSKKPDQDRAAEVPVRIDDFDD---TSFASGPSSSPSLGHDLGGGSGNFQEQLAVAQQQMIFQQVMIKLTDLSFERCVTKPGTSLSYSEQTCIQATVGKFVDCSQLILQRVQNSQ 205          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A6S9DQ42_HETAK (Mitochondrial import inner membrane translocase subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DQ42_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 2.000e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  204 KAVIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            +A+IQ V+ KLTE A D CV KP+SSLS SE++CI SVV KYLDTSE V+GRM   QQ
Sbjct:   66 RALIQTVVAKLTEIAHDKCVGKPSSSLSSSEQACIHSVVSKYLDTSEFVLGRMMKQQQ 123          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A7R9UGB7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.670e-13
Identity = 49/131 (37.40%), Postives = 63/131 (48.09%), Query Frame = 3
Query:   15 KNMSWFGFGGSDKDNKPTGGAMKIDDFDTSNSTHFDNTPSFASSXXXXXXXXXXXXXXXXXXX------------KAVIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAG 371
            + MSWFGFG S  D+  +  +    D        F ++ SF S+                               KA +QAV+  LTE AF+ C++KP SSL   ERSCI SVVGKYLDT+E V+ RM  G
Sbjct:   18 RKMSWFGFGSSGDDSGESSSSSSSFDAPLGGGESFGDSSSFGSAPAMGGGLGARAPGGAGMAGLDIRSQLMAERQKAELQAVIGALTELAFEQCISKPGSSLGSGERSCIESVVGKYLDTNEFVLMRMTRG 148          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: K8YZ78_NANGC (Mitochondrial import inner membrane translocase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ78_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 3.420e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  204 KAVIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            KA++Q+V+ +LTE AF++C+TKP SSLS  E+SCI + V KYLDTSE V+GR+Q   Q
Sbjct:   67 KALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQ 124          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: W7TJX5_9STRA (Mitochondrial protein translocase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.610e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  204 KAVIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            KA++Q+V+ +LTE AF++C+TKP SSLS  E+SCI + V KYLDTSE V+GR+Q   Q
Sbjct:  103 KALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQ 160          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A8J2T0W3_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0W3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.410e-9
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 3
Query:  204 KAVIQAVMFKLTESAFDSCVTK-PTSSLSFSERSCIGSVVGKYLDTSELVVGR 359
            +A++Q V+ KLTE +FD+C+ K P S+LS  ER+CI +VVGKYLDTSE V+GR
Sbjct:   74 RALVQQVIAKLTEVSFDTCLQKKPDSTLSAGERACIHTVVGKYLDTSEFVLGR 126          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A7S2FZJ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZJ1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-8
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  210 VIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            ++Q V+ KLTE+AFD C+ KP S L  SE+ CI + V K+LDT++ V GR Q   Q
Sbjct:   98 MVQEVLNKLTEAAFDKCINKPESGLGSSEKQCINATVQKWLDTTQFVQGRFQRKAQ 153          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A7S0GC03_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC03_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.520e-7
Identity = 42/130 (32.31%), Postives = 60/130 (46.15%), Query Frame = 3
Query:   21 MSWFGFGGSDKDNKPTGGAMKIDDFDTSNSTHFDNT----------PSFASSXXXXXXXXXXXXXXXXXXXKAVIQAVMFKLTESAFDSCVT-KPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            M WFG G S  D              +++ST   NT          PS  S                    + +++ V+ KLTE++F+ C+  KP+ SLS  E +CI + VGK+LDTSE + GRM+  QQ
Sbjct:    1 MGWFGGGSSSNDXXXA----------SASSTSISNTDPMYDDYSAEPSGGSGMEMSGGAGDLQQFSTAIQQQMIVEQVVTKLTEASFEKCIQGKPSESLSGRESACIYATVGKWLDTSEFMRGRMEKMQQ 120          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A7S1BET9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BET9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.230e-6
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  210 VIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQQ 377
            +++ V+ KLTE + D C++KP +SLS  E SCI S VGK+LDT+E ++ R+Q   Q
Sbjct:   66 LVETVVNKLTEMSVDKCISKPETSLSGREVSCIHSQVGKWLDTNEFLMRRLQKKTQ 121          
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Match: A0A6G0X2Q9_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2Q9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.110e-6
Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = 3
Query:   21 MSWFGFGGSDKDNKPTG----GAMKIDDFDTSNSTHFDNTPSFASSXXXXXXXXXXXXXXXXXXXKAVIQAVMFKLTESAFDSC-VTKPTSSLSFSERSCIGSVVGKYLDTSELVVGRMQAGQ 374
            MSWFGFGG  K+ +P            + D S+S  +  TP+ +SS                   K +IQ  + K+T  A++ C  +KP +SLS SE SCI +V   YLD+S  +V ++ +G+
Sbjct:    1 MSWFGFGGK-KEEEPAPISSFSESSFSEIDASSSPSY--TPAISSSGGTSVNDIIMEEQQ-----KVLIQQAIAKITAIAWEKCSASKPDTSLSASEISCIQNVTTSYLDSSVFIVRKLSSGR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10523.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A482SEV0_9ARCH7.790e-1437.98Tim10/DDP family zinc finger protein n=1 Tax=archa... [more]
A0A6S9DQ42_HETAK2.000e-1365.52Mitochondrial import inner membrane translocase su... [more]
A0A7R9UGB7_9STRA2.670e-1337.40Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8YZ78_NANGC3.420e-1358.62Mitochondrial import inner membrane translocase su... [more]
W7TJX5_9STRA7.610e-1358.62Mitochondrial protein translocase family n=1 Tax=N... [more]
A0A8J2T0W3_9STRA1.410e-960.38Mitochondrial import inner membrane translocase su... [more]
A0A7S2FZJ1_9STRA4.650e-850.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0GC03_9STRA2.520e-732.31Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1BET9_9STRA1.230e-648.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6G0X2Q9_9STRA4.110e-633.33Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10523contigD-dudresnayi_contig10523:535..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue6.8e-09
Seed eggNOG ortholog2880.D7FHL9
Preferred nameTIMM8B
KEGG koko:K01209,ko:K17780
KEGG TC3.A.8.1
KEGG ReactionR01762
KEGG Pathwayko00520,map00520
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008324,GO:0008565,GO:0009987,GO:0015031,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046873,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.protein transport
EggNOG OGsKOG3489@1,KOG3489@2759
EC3.2.1.55
COG Functional cat.O
CAZyGH51
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10523.573.1prot_D-dudresnayi_contig10523.573.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10523 555..914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.3895526-UTR-D-dudresnayi_contig10523:534..5541622927555.3895526-UTR-D-dudresnayi_contig10523:534..554Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10523 535..554 +
1690556805.5955157-UTR-D-dudresnayi_contig10523:534..5541690556805.5955157-UTR-D-dudresnayi_contig10523:534..554Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10523 535..554 +
1622927555.536839-UTR-D-dudresnayi_contig10523:914..9791622927555.536839-UTR-D-dudresnayi_contig10523:914..979Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10523 915..979 +
1690556805.6156201-UTR-D-dudresnayi_contig10523:914..9791690556805.6156201-UTR-D-dudresnayi_contig10523:914..979Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10523 915..979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.5230894-CDS-D-dudresnayi_contig10523:554..9141622927555.5230894-CDS-D-dudresnayi_contig10523:554..914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10523 555..914 +
1690556805.6078203-CDS-D-dudresnayi_contig10523:554..9141690556805.6078203-CDS-D-dudresnayi_contig10523:554..914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10523 555..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10523.573.1

>prot_D-dudresnayi_contig10523.573.1 ID=prot_D-dudresnayi_contig10523.573.1|Name=mRNA_D-dudresnayi_contig10523.573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
MSWFGFGGSDKDNKPTGGAMKIDDFDTSNSTHFDNTPSFASSGGSSSSGG
SFEQQMMMEQQKAVIQAVMFKLTESAFDSCVTKPTSSLSFSERSCIGSVV
GKYLDTSELVVGRMQAGQQ*
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mRNA from alignment at D-dudresnayi_contig10523:535..979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10523.573.1 ID=mRNA_D-dudresnayi_contig10523.573.1|Name=mRNA_D-dudresnayi_contig10523.573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=445bp|location=Sequence derived from alignment at D-dudresnayi_contig10523:535..979+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATATTCCCATAAGAAAAATATGTCTTGGTTTGGATTTGGTGGTTCGGAC AAGGATAATAAGCCCACTGGTGGTGCTATGAAGATCGATGACTTTGATAC TTCCAATTCCACCCATTTTGACAACACGCCCAGCTTCGCCTCTAGTGGCG GGAGCAGCAGCAGTGGCGGCTCTTTCGAGCAACAAATGATGATGGAACAA CAGAAGGCAGTCATCCAGGCAGTTATGTTCAAGTTAACTGAATCCGCTTT TGACTCGTGTGTCACCAAGCCAACTTCCTCTCTTTCTTTCAGTGAGCGCA GTTGTATCGGCTCCGTGGTGGGCAAATACTTAGATACATCAGAGCTTGTG GTGGGTCGCATGCAAGCTGGCCAGCAATAAGTTACTTTATCTCTTGAATG TTGCTTTCTGATAACATTATCGTTTAATAATGTGAAAAGTTCTTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10523:535..979+

>mRNA_D-dudresnayi_contig10523.573.1 ID=mRNA_D-dudresnayi_contig10523.573.1|Name=mRNA_D-dudresnayi_contig10523.573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig10523:535..979+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTTGGTTTGGATTTGGTGGTTCGGACAAGGATAATAAGCCCACTGG
TGGTGCTATGAAGATCGATGACTTTGATACTTCCAATTCCACCCATTTTG
ACAACACGCCCAGCTTCGCCTCTAGTGGCGGGAGCAGCAGCAGTGGCGGC
TCTTTCGAGCAACAAATGATGATGGAACAACAGAAGGCAGTCATCCAGGC
AGTTATGTTCAAGTTAACTGAATCCGCTTTTGACTCGTGTGTCACCAAGC
CAACTTCCTCTCTTTCTTTCAGTGAGCGCAGTTGTATCGGCTCCGTGGTG
GGCAAATACTTAGATACATCAGAGCTTGTGGTGGGTCGCATGCAAGCTGG
CCAGCAATAAATGTCTTGGTTTGGATTTGGTGGTTCGGACAAGGATAATA
AGCCCACTGGTGGTGCTATGAAGATCGATGACTTTGATACTTCCAATTCC
ACCCATTTTGACAACACGCCCAGCTTCGCCTCTAGTGGCGGGAGCAGCAG
CAGTGGCGGCTCTTTCGAGCAACAAATGATGATGGAACAACAGAAGGCAG
TCATCCAGGCAGTTATGTTCAAGTTAACTGAATCCGCTTTTGACTCGTGT
GTCACCAAGCCAACTTCCTCTCTTTCTTTCAGTGAGCGCAGTTGTATCGG
CTCCGTGGTGGGCAAATACTTAGATACATCAGAGCTTGTGGTGGGTCGCA
TGCAAGCTGGCCAGCAATAA
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