mRNA_D-dudresnayi_contig10518.564.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10518.564.1
Unique NamemRNA_D-dudresnayi_contig10518.564.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10518.564.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.160e-62
Identity = 102/134 (76.12%), Postives = 116/134 (86.57%), Query Frame = 1 
Query:    1 AIPFLQSALRQALEPDYPHAAGKRRELLSKIASMELVFRKLEECRRKPFDIQDKLCCVYIRQSRGPMAQLWSKENDRSLLIGCLKHGSGRFQSMVQDDTLGLRPPLELALENAGGPSWQLVWDDKGPTGQPGFK 402
            A PFLQSAL++ALEPDYPHAAGKRRELLS+IA+MELVFRKL+EC+ KPFDIQDKLC VYI Q++G   + WS+ENDRSLLIG LKHG+ R+Q+MVQDDTLGLRP LELAL   GG SWQL W + GPTGQPGFK
Sbjct: 1665 AKPFLQSALKKALEPDYPHAAGKRRELLSRIAAMELVFRKLQECKGKPFDIQDKLCGVYINQAKGGGLEEWSRENDRSLLIGLLKHGNSRYQAMVQDDTLGLRPALELALAGGGGASWQLAWGEDGPTGQPGFK 1798
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BLAST of mRNA_D-dudresnayi_contig10518.564.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 4.770e-61
Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 AIPFLQSALRQALEPDYPHAAGKRRELLSKIASMELVFRKLEECRRKPFDIQ--DKLCCVYIRQSRGPMAQLWSKENDRSLLIGCLKHGSGRFQSMVQDDTLGLRPPLELALENAGGPSWQLVWDDKGPTGQPGFK 402
            A PFLQSAL++ALEPDYPHAAGKRRELLS+IA+MELVFRKL+EC+ KPFDIQ  DKLC VYI Q++G   + WS+ENDRSLLIG LKHG+ R+Q+MVQDDTLGLRP LELAL + GG SWQL W + GPTGQPGFK
Sbjct: 1567 AKPFLQSALKKALEPDYPHAAGKRRELLSRIAAMELVFRKLQECKGKPFDIQARDKLCGVYINQAKGGGLEEWSRENDRSLLIGLLKHGNSRYQAMVQDDTLGLRPALELALASGGGASWQLAWGEDGPTGQPGFK 1702
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10518.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A4_ECTSI1.160e-6276.12Similar to chromodomain helicase DNA binding prote... [more]
A0A6H5JZW8_9PHAE4.770e-6175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10518contigD-dudresnayi_contig10518:277..3893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.9e-54
Seed eggNOG ortholog2880.D7G7A4
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10518.564.1prot_D-dudresnayi_contig10518.564.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10518 279..3893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.398024-CDS-D-dudresnayi_contig10518:278..3431622927554.398024-CDS-D-dudresnayi_contig10518:278..343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 279..343 -
1690556805.1037488-CDS-D-dudresnayi_contig10518:278..3431690556805.1037488-CDS-D-dudresnayi_contig10518:278..343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 279..343 -
1622927554.410573-CDS-D-dudresnayi_contig10518:3162..33431622927554.410573-CDS-D-dudresnayi_contig10518:3162..3343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 3163..3343 -
1690556805.1243062-CDS-D-dudresnayi_contig10518:3162..33431690556805.1243062-CDS-D-dudresnayi_contig10518:3162..3343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 3163..3343 -
1622927554.423031-CDS-D-dudresnayi_contig10518:3737..38931622927554.423031-CDS-D-dudresnayi_contig10518:3737..3893Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 3738..3893 -
1690556805.1332688-CDS-D-dudresnayi_contig10518:3737..38931690556805.1332688-CDS-D-dudresnayi_contig10518:3737..3893Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 3738..3893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10518.564.1

>prot_D-dudresnayi_contig10518.564.1 ID=prot_D-dudresnayi_contig10518.564.1|Name=mRNA_D-dudresnayi_contig10518.564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=134bp
AIPFLQSALRQALEPDYPHAAGKRRELLSKIASMELVFRKLEECRRKPFD
IQDKLCCVYIRQSRGPMAQLWSKENDRSLLIGCLKHGSGRFQSMVQDDTL
GLRPPLELALENAGGPSWQLVWDDKGPTGQPGFK
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mRNA from alignment at D-dudresnayi_contig10518:277..3893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10518.564.1 ID=mRNA_D-dudresnayi_contig10518.564.1|Name=mRNA_D-dudresnayi_contig10518.564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3617bp|location=Sequence derived from alignment at D-dudresnayi_contig10518:277..3893- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTATACCTTTCTTGCAGAGCGCCCTGCGGCAAGCGCTGGAGCCGGACTA
TCCGCACGCAGCGGGGAAGAGGAGAGAGCTGCTGTCGAAGATTGCGTCCA
TGGAGCTCGTATTTCGCAAGCTGGAGGAGTGCAGGCGGAAGCCGTTTGAC
ATACAGGCAATATAAACATGCCCTCCTTAATCTATTTTGTTTTTTTTTGT
GCTTGTGTGTGTACGTAGAAGCAATACTTCGAAGTATGATTGTTTTTTTT
GGGTGGGTGGGTGGGTGGGTGGGTGGGTATAGATAGGCCTGTTATATATG
CTATGCTTTGTTAATGCATCGAGGCATCGTTTCGGGAATTGTTGTGTTTT
TGTGTTTTTGTGTTTTTTGGCAAAAAGTTGTCGGACTAGGGCTCTTGCGT
TTATTTTTATTTCTGCCGTAGGCTGTCTGTCTTGTTCGCCCATCTCATCC
TACAATCCTGTTTTTTTTTGTTTGTTTTTTTGCATGACTGAGACTTTTCC
TTTCGATTGCCCCCTTAATGGGAAACCTAAACACGGTTACCTCCCGGCAG
GACAAGCTGTGCTGTGTCTACATCCGGCAGAGTCGCGGCCCGATGGCTCA
GCTGTGGAGCAAGGAGAACGATCGGAGCCTGCTGATAGGCTGCCTCAAGC
ACGGGTCCGGGAGATTCCAGAGCATGGTGCAGGATGACACGCTGGGATTG
AGGCCTCCGCTGGAGCTTGCGCTCGAGAACGGTGCGTGTGCGAGTGTTGT
TATTGTTGTTGTTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGTTGGTA
TTGGTAAGAGATGTTGTAATAGTGCATGGCAAGACGGGGGTGCATACGCT
GGGCCTTGGTGTTTTCATCTCGGCGAGGAGGGTTTAGGAGGTTGGCGGCG
TCTTGCCCGAGTGCTATCGGTTTGTAAGTCGTATTTGTGGCTTATAAAAT
GCTGTTTTTGAAACCCCCATAAGACTACATACAAATTCAGTTTTTGAGGT
CGGTCGCTGTGGCGGGCTTTTCAGACTGTCGAAGGCTGTTCAGCTGTTCA
GACTGTCAAAACTGTCTGCTGTCGTGCAATGTCAGCACACTTCGGGCTGT
TTGACATGGAACAGCCGTGCAACGTCAGCTTCTTTATTTTTTTGTGTCAG
CTGACAAAAAAACGTTTCGCACGTGACACACACACACACAGCCCAGCTCC
TGACGTGCTGAGACAGCTCCTGACAAGTACCAACACACGCACACACACAC
ATACCTCCTAATCCTCCTCCTCGCGGGCCACAATAACCTTCGTGGGCCGT
AGTCGACGAGATTGGTGATGGTGCGTGTCTACTGAGAACCACCGCCAGGC
TTGCATGATGCTTTTGGGGGCCCGAATAGTCACGCCCAGGTTCGCGGCGT
CAACAAAAAATCGTGTCACATTTTTTAGGGGCAAACCAGCCATTTTACGG
CCATTTCTTATACTGTCGAATTAAAAGGATCGAAAAACAAGGCAATTTCC
GATCGGTCTGCGAGTTGTCTAGACCTCTTTCTTATTATAGTTGTGTGGAT
CGAGTTTGTAGTTTTTGAACAGTTCCGAGGAAAAGGGATATTATTGGGCA
TAAGGTATACGTAGGCGAAAGTCAAATCGATACAGCTTTTCTGTCCTACT
CCCGGGTTCTAGGAGGTCTTCGTCCCTCAGCAGCTGTGCCCAAGCACACA
TACACATGTCTCGCCTGGCCTCGAGCGACGCGTGCGCTTCACGCGCGAGG
AGTTATCGCCCAAATCGTCGTGGAGGTTGTGCGGCGTTGGACGTTCGTCA
AGAGACGCCAACGCTACGCAGCCAGATCATGCAGCTGTTGGCAAGTGCTA
GGTCATCGGTACCGCGCGCTGCTGCCATCAGATGATGGTATGCGGCGAAC
AGCGCCACCAGCAGTGATAGCAGCCAAGCCGGCATCGGCGTTGTTTTTGT
GTGGAGCGTGGAGTGGGTGTATGTGTAGGTGTGTGGTTTGAGTTGTGATG
AGAGATGTGAATAAATATACAGTCAGTACTACAACTGTAGTACAGACAGT
AGTACAAGTACAACAACAAACAATAACAACAGCATTTTAGTATCAACAAC
TTTTCCCTTTTTCAATCCACGAATGAACCCGATCTGCTTTTCGCATCGAA
AATATCATCTTTTTCGATCCTTCCTGTGGTCCGATCGGAAAAGAGAATCG
AAAAAACTGAGATCGAAACGCCCCATTCCGACTGTTGCATGATATAATAA
CAATGCCAATTTGTGTCTCGGATCGAAAATCACCTTTCTTTTTCGATCCA
TGAAGTGGACTGTATAAGAAGAAATGGCCTTACTTCAGCGAGCACGCATA
CAACAACATGGTTTCAGCAATTAACGAACATGTTCAGTTCGTATGTTCAG
GGATCCACCCCACCAGCCACGCCTTATTTATTACTACACGCAAGAGTATT
TGCGGATAATGGGTCAACCAACAGCTTACGCAGGCTATGATACATCGAAC
TTGCGGCCCCTGAACAACTGTTGTTGTTGTTGTACTAACGATAGAAGAAG
GTGCTGTGGCCGGCACGGTTTTCCCTCAACCGCCTGATCCGCCCATCGAC
AACACATTGCATGTCTTACTCCATCCAAAATTATTTTCACTACTCCACTC
TGTCGCCCACGAACCGCGCACTACACGCAATGTGTTATTTGCGAGTTTTT
TCTTTTCTCTTGAATCACCCCGTGTGACTGTTCTCTCATGAGCCATGTCC
GGAGGGGGATCTTGTATATACAACAAATTCGACAGAGTTTAGTATACTAT
TTTTGTTTTTTTGTATCGCATGTAGTGGCGCAATGGTCTAGTGGTTAGGG
TGTTCGCCTCTGTTGGCGGAAGTTGGGGAGTCGATTCCCGGTGGCACTTT
TCTGTGCCATCTTCCGTCGCGGAAAACGCGAGAGCGTGAGTAAGCACAAT
TCGATGAAAGTCGACGAGGGAAGAAAGGGCTGCACTCTTCTCGCGATAAA
AAAATATAGGCACGTACCGTAGTGGGAAGGCAGAGGAGCGCCTACTATGT
GACCCCGGATATGAGTTACGAAGAGAGATGGAGCTAGAGAAAGAATAGGG
CGAAGATAATAAATGAGATGGAAAAAAAAAATGTATGGTCGGCTATAATA
GTATGTATTATAGTTACCACGGTATCTAGCGCGCTCGCTCAACCAAGAGT
GCTGCTTTGCTTCTCAACTCAGCGCTTTTCCCGATAGTTCCATCCACAAA
CCAAAACAAACCAAACCATCCCTACGTAGTAAACCAAGTAATGCCGCATT
TTCGAGCATTTTCGAACGGTTTTGTTTTATCTCCCGGCGGTTGATTAAAC
TGATAGTTTCAGCTCTGCTCGCAACCTTCCACAGCAAGCTAGCTTCGTCT
GGTTGTTGTACAACACGACACTGCCATGTATGACCACCACCTCGGTACTA
GGCTATTACTACTATACGTATAATATTGAGTCGTGTATTGTGTACTCTAT
GGTCATGTAGCGGTATCTATTGTGCCGCGTTGTGTGATGCTTGTTTTCAG
CGGGGGGACCCTCGTGGCAGCTGGTGTGGGATGACAAGGGACCTACGGGA
CAGCCAGGGTTCAAGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10518:277..3893-

>mRNA_D-dudresnayi_contig10518.564.1 ID=mRNA_D-dudresnayi_contig10518.564.1|Name=mRNA_D-dudresnayi_contig10518.564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at D-dudresnayi_contig10518:277..3893- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTATACCTTTCTTGCAGAGCGCCCTGCGGCAAGCGCTGGAGCCGGACTA
TCCGCACGCAGCGGGGAAGAGGAGAGAGCTGCTGTCGAAGATTGCGTCCA
TGGAGCTCGTATTTCGCAAGCTGGAGGAGTGCAGGCGGAAGCCGTTTGAC
ATACAGGCTATACCTTTCTTGCAGAGCGCCCTGCGGCAAGCGCTGGAGCC
GGACTATCCGCACGCAGCGGGGAAGAGGAGAGAGCTGCTGTCGAAGATTG
CGTCCATGGAGCTCGTATTTCGCAAGCTGGAGGAGTGCAGGCGGAAGCCG
TTTGACATACAGGACAAGCTGTGCTGTGTCTACATCCGGCAGAGTCGCGG
CCCGATGGCTCAGCTGTGGAGCAAGGAGAACGATCGGAGCCTGCTGATAG
GCTGCCTCAAGCACGGGTCCGGGAGATTCCAGAGCATGGTGCAGGATGAC
ACGCTGGGATTGAGGCCTCCGCTGGAGCTTGCGCTCGAGAACGGACAAGC
TGTGCTGTGTCTACATCCGGCAGAGTCGCGGCCCGATGGCTCAGCTGTGG
AGCAAGGAGAACGATCGGAGCCTGCTGATAGGCTGCCTCAAGCACGGGTC
CGGGAGATTCCAGAGCATGGTGCAGGATGACACGCTGGGATTGAGGCCTC
CGCTGGAGCTTGCGCTCGAGAACGCGGGGGGACCCTCGTGGCAGCTGGTG
TGGGATGACAAGGGACCTACGGGACAGCCAGGGTTCAAGCGGGGGGACCC
TCGTGGCAGCTGGTGTGGGATGACAAGGGACCTACGGGACAGCCAGGGTT
CAAG
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