mRNA_D-dudresnayi_contig10513.562.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10513.562.1
Unique NamemRNA_D-dudresnayi_contig10513.562.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10513.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10513contigD-dudresnayi_contig10513:8497..9133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.1213586-UTR-D-dudresnayi_contig10513:8496..87281622927554.1213586-UTR-D-dudresnayi_contig10513:8496..8728Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10513 8497..8728 +
1690556804.9543815-UTR-D-dudresnayi_contig10513:8496..87281690556804.9543815-UTR-D-dudresnayi_contig10513:8496..8728Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10513 8497..8728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.1344407-CDS-D-dudresnayi_contig10513:8728..91331622927554.1344407-CDS-D-dudresnayi_contig10513:8728..9133Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10513 8729..9133 +
1690556804.9673648-CDS-D-dudresnayi_contig10513:8728..91331690556804.9673648-CDS-D-dudresnayi_contig10513:8728..9133Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10513 8729..9133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10513.562.1prot_D-dudresnayi_contig10513.562.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10513 8729..9133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10513.562.1

>prot_D-dudresnayi_contig10513.562.1 ID=prot_D-dudresnayi_contig10513.562.1|Name=mRNA_D-dudresnayi_contig10513.562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=135bp
MTHSRGQRGLCPVGFISVYSLRKASYDSCYRLVRLSAARSRSCEWLIPSI
FLIFLFRLSCRDCTSMNDNANLLHDNFLQSAFRSDDTAESSGTQPNEAAL
SSATTPSRPGRQDRHQHSCVRMSDNVDRNTSRRRR
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mRNA from alignment at D-dudresnayi_contig10513:8497..9133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10513.562.1 ID=mRNA_D-dudresnayi_contig10513.562.1|Name=mRNA_D-dudresnayi_contig10513.562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at D-dudresnayi_contig10513:8497..9133+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGAAAGTGTAAAGCAGATACATCAGGCGACGACATCGAAAACGAGGCAAA
GACTCCCACCGGGGTGATCAACCCTTTAGGCATGACAGCCCGGTCATGCA
AACACACGACGCCGAGTGTGAATTTACGGAGACTGCGGAGGACGCACCGT
GAGTTTTTCACCTACTTTATACCCGCCGTTTTAAAGCTTGTTTTATAGCT
CTATTCTTTTAAGTTTTTTGGGAGGGGGTTATATGACCCATTCTCGGGGG
CAACGGGGGCTATGCCCTGTGGGCTTTATAAGTGTCTACTCCTTGAGGAA
GGCGTCGTATGATTCGTGCTACCGTCTCGTACGTCTTTCAGCGGCTCGGA
GCCGATCGTGCGAGTGGCTAATCCCATCTATTTTCTTGATCTTCCTCTTT
CGTTTATCCTGTAGGGATTGCACCAGCATGAACGACAACGCCAATTTGCT
ACATGACAATTTCTTACAGTCGGCGTTCAGAAGCGACGACACCGCCGAAT
CGTCCGGCACCCAACCGAACGAGGCAGCGCTGAGCTCTGCTACAACCCCT
TCACGGCCAGGGCGACAAGATCGGCACCAACATAGCTGCGTCAGGATGTC
GGACAATGTCGACCGCAATACCTCTCGTCGGCGACGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10513:8497..9133+

>mRNA_D-dudresnayi_contig10513.562.1 ID=mRNA_D-dudresnayi_contig10513.562.1|Name=mRNA_D-dudresnayi_contig10513.562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at D-dudresnayi_contig10513:8497..9133+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACCCATTCTCGGGGGCAACGGGGGCTATGCCCTGTGGGCTTTATAAG
TGTCTACTCCTTGAGGAAGGCGTCGTATGATTCGTGCTACCGTCTCGTAC
GTCTTTCAGCGGCTCGGAGCCGATCGTGCGAGTGGCTAATCCCATCTATT
TTCTTGATCTTCCTCTTTCGTTTATCCTGTAGGGATTGCACCAGCATGAA
CGACAACGCCAATTTGCTACATGACAATTTCTTACAGTCGGCGTTCAGAA
GCGACGACACCGCCGAATCGTCCGGCACCCAACCGAACGAGGCAGCGCTG
AGCTCTGCTACAACCCCTTCACGGCCAGGGCGACAAGATCGGCACCAACA
TAGCTGCGTCAGGATGTCGGACAATGTCGACCGCAATACCTCTCGTCGGC
GACGAATGACCCATTCTCGGGGGCAACGGGGGCTATGCCCTGTGGGCTTT
ATAAGTGTCTACTCCTTGAGGAAGGCGTCGTATGATTCGTGCTACCGTCT
CGTACGTCTTTCAGCGGCTCGGAGCCGATCGTGCGAGTGGCTAATCCCAT
CTATTTTCTTGATCTTCCTCTTTCGTTTATCCTGTAGGGATTGCACCAGC
ATGAACGACAACGCCAATTTGCTACATGACAATTTCTTACAGTCGGCGTT
CAGAAGCGACGACACCGCCGAATCGTCCGGCACCCAACCGAACGAGGCAG
CGCTGAGCTCTGCTACAACCCCTTCACGGCCAGGGCGACAAGATCGGCAC
CAACATAGCTGCGTCAGGATGTCGGACAATGTCGACCGCAATACCTCTCG
TCGGCGACGA
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