mRNA_D-dudresnayi_contig1051.558.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1051.558.1
Unique NamemRNA_D-dudresnayi_contig1051.558.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1051.558.1 vs. uniprot
Match: D8LDA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA0_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.020e-45
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 3 
Query:    3 AVDARMTMELYNLWRRAGDPGQPLGLPLSFFVVIFHGFKPNNRRDSTLWTILRPE---CAVEWRGRQTGLEKDSGNNTYKLSFRSEPERDAYLAAVENRMAAADLQWRGARKHVPGKKGAEDGYQLSCGLFKVHVLEHKR 413
            A DARMTMEL+NLWRRAG+P +PLGLPLSFF+V FH FKP+  R ++L  +LRPE        RG    LEKDSG+NTYKL FRS   R+AYL  +E +M AA L W  A + V GKKGA DGYQLSCG FK+HVLE  R
Sbjct:  234 AADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLG-MLRPEGGGAGGLGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMLAAGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 372
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BLAST of mRNA_D-dudresnayi_contig1051.558.1 vs. uniprot
Match: A0A835YNX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.720e-13
Identity = 56/142 (39.44%), Postives = 70/142 (49.30%), Query Frame = 3 
Query:    3 AVDARMTMELYNLWRRAGDPGQPLGLPLSFFVVIFHGFK---PNNRRDSTLWTILRPECAVEWRGRQTGLEKDSGNNTYKLSFRSEPERDAYLAAVENRMAAA--DLQWRGARKHVPGKKGAEDGYQLSCGLFKVHVLEHKR 413
            A DAR+ MEL+  WRR G P + + L L F+VV  HG +    +  R  TL+  LRPE       R   LE+D G N +KL FR E ER AY+  V  RM AA  DL          G +      + SC LF  H+ E  R
Sbjct:  202 AADARLCMELFRRWRRGGCP-RSVPLNLKFYVVNVHGLRRGGAHQERHQTLFEYLRPERG----NRGVVLEQDDGRN-FKLKFREENERAAYMCIVRRRMQAAHEDLG-PSLPAQESGSEKVTAAVRYSCRLFTAHLYEITR 336
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1051.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDA0_ECTSI2.020e-4561.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNX9_9STRA3.720e-1339.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1051contigD-dudresnayi_contig1051:22616..26861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue5.3e-39
Seed eggNOG ortholog2880.D8LDA0
EggNOG OGs2EQUY@1,2STSS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1306
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1051.558.1prot_D-dudresnayi_contig1051.558.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1051 23506..26844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.2853618-UTR-D-dudresnayi_contig1051:22615..235051622927553.2853618-UTR-D-dudresnayi_contig1051:22615..23505Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1051 22616..23505 -
1690556804.547246-UTR-D-dudresnayi_contig1051:22615..235051690556804.547246-UTR-D-dudresnayi_contig1051:22615..23505Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1051 22616..23505 -
1622927553.33325-UTR-D-dudresnayi_contig1051:26844..268611622927553.33325-UTR-D-dudresnayi_contig1051:26844..26861Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1051 26845..26861 -
1690556804.577536-UTR-D-dudresnayi_contig1051:26844..268611690556804.577536-UTR-D-dudresnayi_contig1051:26844..26861Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1051 26845..26861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.300151-CDS-D-dudresnayi_contig1051:23505..236891622927553.300151-CDS-D-dudresnayi_contig1051:23505..23689Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1051 23506..23689 -
1690556804.5585525-CDS-D-dudresnayi_contig1051:23505..236891690556804.5585525-CDS-D-dudresnayi_contig1051:23505..23689Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1051 23506..23689 -
1622927553.3224754-CDS-D-dudresnayi_contig1051:26629..268441622927553.3224754-CDS-D-dudresnayi_contig1051:26629..26844Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1051 26630..26844 -
1690556804.5679677-CDS-D-dudresnayi_contig1051:26629..268441690556804.5679677-CDS-D-dudresnayi_contig1051:26629..26844Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1051 26630..26844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1051.558.1

>prot_D-dudresnayi_contig1051.558.1 ID=prot_D-dudresnayi_contig1051.558.1|Name=mRNA_D-dudresnayi_contig1051.558.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=133bp
MTMELYNLWRRAGDPGQPLGLPLSFFVVIFHGFKPNNRRDSTLWTILRPE
CAVEWRGRQTGLEKDSGNNTYKLSFRSEPERDAYLAAVENRMAAADLQWR
GARKHVPGKKGAEDGYQLSCGLFKVHVLEHKR*
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mRNA from alignment at D-dudresnayi_contig1051:22616..26861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1051.558.1 ID=mRNA_D-dudresnayi_contig1051.558.1|Name=mRNA_D-dudresnayi_contig1051.558.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4246bp|location=Sequence derived from alignment at D-dudresnayi_contig1051:22616..26861- (Desmarestia dudresnayi DdudBR16 monoicous)
CGGCGGTGGACGCGCGCATGACGATGGAGCTCTACAACCTGTGGAGGCGT
GCCGGAGACCCGGGGCAACCATTGGGCCTGCCCCTCTCGTTTTTCGTGGT
CATCTTCCACGGTTTTAAGCCAAACAATCGCCGCGATTCTACCCTGTGGA
CGATCCTGCGGCCGGAGTGTGCCGTCGAGTGGCGGGGTCGGCAGACCGGC
CTGGAGAAAGACAGCGGGAACAACACGTACAAGTGAGAGCAGTAGTTGGT
GTGGTATTGACGTAGGCGTTATTATTATTTTTTTTGCCATCCCACAATGT
GCAGAGTTTACTCAGACATGAAAAACAAATCGCAAACAAAGCAACAAAAC
GTCGTCATCACACTCACCAAGAATATATGCAAGAAGATAAGTGTTCGACA
AACGCAGGTGACACGCGTTACTGATATGCAACATTATAGGGGATCGGGTA
TATATACCCTTCAAGCTATCATGCACTGATATGTCATGCTCGTAGTAGCC
TCCCCGCCCCGTATCGGTCTTGGTCTTGGATTAAGGCGGAAGGAGCATAC
TAAGCAACTCAAGCTATGCACGCTGTAAACAAATAAAACGAATCAGGGTA
ACACACCTGCGCTACTAGAAAGTAGGTTTTTAGTACCCCTACTGCCATGC
CCATATCTCTTCACAGAGGAGTGGGCGCGGTGTTTTTTTTTTTATGTGTC
CCTTTATGGTAGAGGAAAGTGCGTTGACAGCAGGGCGTCCAAGGTCATAG
GGGACTGACGGAGGGAGCTATTACACTTGGTCAGATTGATATTCGTTAAA
TCATTTTATCATACTTAAAATAGTATTGACGGGGGTACAGAAAATGCTAG
AAAATTCTGTAACCAACCAACCCGAACCCTAACCCTAACCCAAATGACTC
CCCTATACAAATAGTGAGTAATGACCTTCCAAGAAACTGCTATCATACGA
CCTGCAGAGTATACTGGCTGACGGAGCCATCGGAAATCGACTGGTCTTAC
GAGTACCTTAGACTATGGTCGAAGCCACTCCGGTTTTTTTTTTCATTATT
GATGTTTTTTCTCCGAGGGAGTTCGTAGTGGACCAGGGAGAGTTTCCTGT
CTTTTGCCTTAGAGCGAGTCGCCTTATCAACCATTGTTGTCTTTTTGTAG
GCCGGATCATCGGGGGACATTCGTTTTATTAGATGTATGATTAGTAACAA
CGTGGGCTGTTGCAACAGTTTGGAAAAATCTACATCTGCGAAAGCCCTAG
CCCGAACCGTAACGAACACACTGTATAATAGTAGACAGTCAAAACCTCTG
TAAAATACCTGTTAATGTCCTGTAAAGTTCCTGCATAATTCCTATAAAGT
TCCTGTAAAGTTCCTGTATAATTCCTATAAAGTTCCTGTAAAGTTCCGTC
CTACAACAACGCTAAACCTACTGGGTAGAGGTGTTCGGATCTTCATTCTG
CTGCTTGTGTAGTAACGCGCAAATCAGAGTGATCACACGCCAGCTATACT
ATATAATGGTGTGCATGGGGGGTGGCATGTAGGCTAGTGGTTTTGATTAT
CACCCCTACTTTGAAGGAACTTCGGGGTTCGAATCCCGGTGGAAACATAA
TGGCGCTGTTTCTGTGTCATCTTTGGTTGCGGAAACCGTGAGAATAGCGC
GAGTAAAAGCACAGTTCGATAAAGACAGTCGACGAGAGCTACGGGAGCGC
CGAATCCTATTTTTTTTATTTATTTTTTTTCCGTCCCATTTATTATCTTC
GCTCTATTCTTTCTCTAGCTCCATCTCTCTTCGTCTCTCTAAATCAAATC
CGGGGTCACATAGCAGGCGCTCCTCCGGCCTTCCCACTACCGTACGTGCC
TACATTTTTGTCGCGAGAAGAGTGCAGCACTTTCTTCCCTCGTCGACTTT
CATCGAATTGTGCTTACTCACGCTCTCGCATTTTCCGCGACGGAAGATGG
CACAGAAAGTAGTGCCACCGGGGATCGAACCCCCAACTTCCGCCAACAGA
GGCGAACACCCTAACCACTAGACCATTGGGCCACCCCTGTGTCCTATGCG
TGATAAAAACCGCAAGGAATGTACCGGGGAAGAGGGAAGACACCTGTGAC
CACGGTTTATTGAAACAGGCGCGCCGAGTAACGAGTAGAAGAGCCTTCTT
CCGGTGAGTTGGACTATCATAGTAAAAGTGATGGATAAACAAAAAAAATG
AAGGAAAAAAAAAATGGTTGATGAAAGTAGTATCTGAATCAGCAGATCGG
GATCGTTCTATTTACGTACTAGGAGGTGCCGTTATTATTTACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ATAACGAAACAGCCGCGACGCCCTAAAAGAGGTATTGCTGTCATTAGGAA
CTCGTGACAAGAGGATATCGGAATTATCGTCAACTGTATGTGTTGGTGCG
GCAGTCGTGAGGTGATTGTTGGGTGTCGGTAGGTGTTAGAAGAGGGGTGT
GTATGTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
AAGGCTCGACCGTTCCTCAGATTGTTCTCTTCTGTAGATTTCCGGTTGTC
GGGTGGGGCACGGAGATTCGGGCACGCGAGCTGGTATGAGGCGCCCTATA
TATTTGGCGGCATCGGAATTTAGAATCTCGCTAATCTCGCTTCGCTCGTC
AAACTACCAAAATGCCACAGAATCCGATGAGAGATTGTCAGTAGTCCGCG
CAGACAGCTGAGGGGTATTAGACCACTTTCACTATTAAGGGTCGTTTCTA
ACGGGCAAAAAAAGTCCACAATCGTGACAAAAAAAGATTCTAAAAAAAAA
GAAAAGTCAAGATTCTAAAAAAAAAAAATCACGATTCGTGAGTTTCAAAC
AGGACTTTTGGCAAAAAAAAGGTTTCCAAAAGTCACGAAACCGGACTTTT
TGTCAAGATTGTGGACTTTTTTTGCTCGTTAGAAACGACCATAAGGCAAG
AAATAAAACGTAAATCGCCCTGGTCGAGTTTTTCCATTCGATTTCTCCAC
AGTAGGGCCATTTTTTTTTCATTTTTCCCTTTTTGCAGGTGGTCTTTGTG
GGTAACAAATATATACCCACCGGGTATGTATGTGTGTGTTCGGCCGCTCC
TCCCTTGCCTCCCTCGCCTCAGACTTTCGTTTCGAAGCGAGCCAGAGAGG
GACGCCTACTTAGCTGCTGTGGAAAACCGGATGGCGGCGGCGGATCTGCA
ATGGCGGGGAGCCCGAAAGCATGTGCCTGGCAAAAAGGGGGCCGAGGACG
GCTACCAGCTTTCCTGTGGGCTGTTCAAGGTGCACGTGCTTGAGCACAAG
CGCTGATACGACAGCGCAAGGAGGGTATCATCATGTAGATACGTGAACAA
TCAATCGTGTTGCGTTGGAAAGCGACGCTTCTTTTTGTTGTTGTCATTTT
TCTATATTTTTTCGAGTTTTTCTGTGGGTAGTAGGTTGATGGCTATAGTT
ACACGACCTCGAGTCTCAGCACGTTTTGATGTAACGGAAAGGTATGTCTA
TCATAGAGCTCTACGAAACCCTCATCGGGTGCCTCTCTGAGTACACATCT
CTATTTATAGGAACCCTGCCAAACGTGCTTCTCCTGTAGCTTTGACCGGA
GGTGGCCAAGAGAGGACGTATCGTGATGGGACATATAATACGTCTTCCCA
ACGGTTCGTACGGCCGCATTGTTTATTCAGTGTTTGGCATCATACGAAGT
ATACTCCAAGGATTGTTGGAGCTAAGTACATACATACACATGCATGCCAA
CGTTCTGCCAGTTTTCACAGTACAACAGTATCCGTATGATTTCTCTCTTC
ACCGCTCTTACGTTTAGTTGGCTTGATCTTGAGCCAAGTCTGATTCTGTT
CATTCTCACCCTGACGGAGGCGGTCAAGGATCGGGATTATTTACTCCATT
GCTTTTCATTGGAGCTGCCTCTAGTTCGGTATGAGGTGCTGGTTGAAGTT
GACCTCGCTCCGTGCGTACGTGTGTTTTCATGGATGTCGCGTGTACTTTC
GAAGAGCAAATTGGCTAACTGAAATTCGACATGCCCTGTCTCGGACGCAA
TATGTACGAGACAAAAAAACAGCTCTTAAGCAGTCTGTCTGCCCGACCAG
TAATTGTTAGCTTGGGTCTTAATGCTACAGATAAGAAAAGCCGCCAATTT
TCTTGGGTCAGATCTCTTGTACTTTGAAGTATATTGGTTAGAGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1051:22616..26861-

>mRNA_D-dudresnayi_contig1051.558.1 ID=mRNA_D-dudresnayi_contig1051.558.1|Name=mRNA_D-dudresnayi_contig1051.558.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at D-dudresnayi_contig1051:22616..26861- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACGATGGAGCTCTACAACCTGTGGAGGCGTGCCGGAGACCCGGGGCA
ACCATTGGGCCTGCCCCTCTCGTTTTTCGTGGTCATCTTCCACGGTTTTA
AGCCAAACAATCGCCGCGATTCTACCCTGTGGACGATCCTGCGGCCGGAG
TGTGCCGTCGAGTGGCGGGGTCGGCAGACCGGCCTGGAGAAAGACAGCGG
GAACAACACGTACAAATGACGATGGAGCTCTACAACCTGTGGAGGCGTGC
CGGAGACCCGGGGCAACCATTGGGCCTGCCCCTCTCGTTTTTCGTGGTCA
TCTTCCACGGTTTTAAGCCAAACAATCGCCGCGATTCTACCCTGTGGACG
ATCCTGCGGCCGGAGTGTGCCGTCGAGTGGCGGGGTCGGCAGACCGGCCT
GGAGAAAGACAGCGGGAACAACACGTACAAACTTTCGTTTCGAAGCGAGC
CAGAGAGGGACGCCTACTTAGCTGCTGTGGAAAACCGGATGGCGGCGGCG
GATCTGCAATGGCGGGGAGCCCGAAAGCATGTGCCTGGCAAAAAGGGGGC
CGAGGACGGCTACCAGCTTTCCTGTGGGCTGTTCAAGGTGCACGTGCTTG
AGCACAAGCGCTGAACTTTCGTTTCGAAGCGAGCCAGAGAGGGACGCCTA
CTTAGCTGCTGTGGAAAACCGGATGGCGGCGGCGGATCTGCAATGGCGGG
GAGCCCGAAAGCATGTGCCTGGCAAAAAGGGGGCCGAGGACGGCTACCAG
CTTTCCTGTGGGCTGTTCAAGGTGCACGTGCTTGAGCACAAGCGCTGA
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