mRNA_D-dudresnayi_contig10501.552.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10501.552.1
Unique NamemRNA_D-dudresnayi_contig10501.552.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10501.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10501contigD-dudresnayi_contig10501:8951..9428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size480
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.5346498-CDS-D-dudresnayi_contig10501:8950..92531622927552.5346498-CDS-D-dudresnayi_contig10501:8950..9253Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 8951..9253 +
1690556804.1407478-CDS-D-dudresnayi_contig10501:8950..92531690556804.1407478-CDS-D-dudresnayi_contig10501:8950..9253Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 8951..9253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.5500832-UTR-D-dudresnayi_contig10501:9253..94281622927552.5500832-UTR-D-dudresnayi_contig10501:9253..9428Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10501 9254..9428 +
1690556804.148128-UTR-D-dudresnayi_contig10501:9253..94281690556804.148128-UTR-D-dudresnayi_contig10501:9253..9428Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10501 9254..9428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10501.552.1prot_D-dudresnayi_contig10501.552.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10501 8951..9253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10501.552.1

>prot_D-dudresnayi_contig10501.552.1 ID=prot_D-dudresnayi_contig10501.552.1|Name=mRNA_D-dudresnayi_contig10501.552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=101bp
LQDERDGYPAASCFCFFFASGFVWQDRRALHVKGCNVLLLHIYPHYIHFR
SAVRRVFFFFFCLFSFLLLSSMIVERRRWDNVRSKFVDCDSKYRFDLFLY
*
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mRNA from alignment at D-dudresnayi_contig10501:8951..9428+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10501.552.1 ID=mRNA_D-dudresnayi_contig10501.552.1|Name=mRNA_D-dudresnayi_contig10501.552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=478bp|location=Sequence derived from alignment at D-dudresnayi_contig10501:8951..9428+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGCAGGACGAGCGGGATGGTTATCCGGCTGCCTCGTGTTTTTGTTTTTT
TTTTGCGAGCGGTTTTGTCTGGCAGGACAGACGCGCGCTGCACGTTAAGG
GATGCAATGTTTTGCTTTTACACATCTATCCCCACTATATACATTTTCGT
AGTGCAGTGCGTCGTGTCTTTTTTTTTTTTTTCTGCTTGTTCTCGTTTTT
GTTGTTGTCCAGTATGATTGTCGAACGGAGGCGGTGGGATAATGTGCGTT
CCAAGTTTGTTGATTGTGATTCGAAGTACCGGTTTGACCTATTTTTGTAC
TAGTACGACCAGTTTTTCGGATTAAAGTTTGACCTGCGCACAGCATGGTG
GGCGGCGCAGGGCGCCCTTTTCCTTGTTGCCTCACCTCGTTTCTTATGTA
TGATATTACTGTAGGACGAGGTGTTATTGTTATCTTACAGATCCACGACA
AATCGGGACGAAGGCGTGCGCGCGGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10501:8951..9428+

>mRNA_D-dudresnayi_contig10501.552.1 ID=mRNA_D-dudresnayi_contig10501.552.1|Name=mRNA_D-dudresnayi_contig10501.552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at D-dudresnayi_contig10501:8951..9428+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGCAGGACGAGCGGGATGGTTATCCGGCTGCCTCGTGTTTTTGTTTTTT
TTTTGCGAGCGGTTTTGTCTGGCAGGACAGACGCGCGCTGCACGTTAAGG
GATGCAATGTTTTGCTTTTACACATCTATCCCCACTATATACATTTTCGT
AGTGCAGTGCGTCGTGTCTTTTTTTTTTTTTTCTGCTTGTTCTCGTTTTT
GTTGTTGTCCAGTATGATTGTCGAACGGAGGCGGTGGGATAATGTGCGTT
CCAAGTTTGTTGATTGTGATTCGAAGTACCGGTTTGACCTATTTTTGTAC
TAGTTGCAGGACGAGCGGGATGGTTATCCGGCTGCCTCGTGTTTTTGTTT
TTTTTTTGCGAGCGGTTTTGTCTGGCAGGACAGACGCGCGCTGCACGTTA
AGGGATGCAATGTTTTGCTTTTACACATCTATCCCCACTATATACATTTT
CGTAGTGCAGTGCGTCGTGTCTTTTTTTTTTTTTTCTGCTTGTTCTCGTT
TTTGTTGTTGTCCAGTATGATTGTCGAACGGAGGCGGTGGGATAATGTGC
GTTCCAAGTTTGTTGATTGTGATTCGAAGTACCGGTTTGACCTATTTTTG
TACTAG
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