mRNA_D-dudresnayi_contig10501.551.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10501.551.1
Unique NamemRNA_D-dudresnayi_contig10501.551.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10501.551.1 vs. uniprot
Match: D8LJU2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.530e-8
Identity = 53/166 (31.93%), Postives = 69/166 (41.57%), Query Frame = 1 
Query:  115 IVHQQRMLPTQAAPSSARGGGGGHRTVSHQRTKCLNCGFGLGQYGVEFCGE--------YCSLDCFTSAKITGRNVPREVRCRRRYEAQTAPWPKGLMVEPPPSPKPWRGRT-----------WSNDSWRTSFTGNLTA------DESSQDS-VTDWHGIGSDFGE 534
            +V+Q+   P Q   SS RG           R +C  CG+GLGQ+ VE+           YCSLDC+TSAK                         GL+++ PP PKPWR              W++     S TG   A      D SSQ+S V DW  + S+ GE
Sbjct:    1 MVYQRTASPAQF--SSGRG----------SRERCRGCGYGLGQFQVEYASNDDDGLGRGYCSLDCYTSAK-------------------------GLLLDAPPEPKPWRRTAIMSRRQQRDLGWTSTVLPGSSTGTFGAGGAAGDDTSSQESSVADWQTVDSEDGE 129
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BLAST of mRNA_D-dudresnayi_contig10501.551.1 vs. uniprot
Match: A0A6H5KT65_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT65_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.880e-8
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  115 IVHQQRMLPTQAAPSSARGGGGGHRTVSHQRTKCLNCGFGLGQYGVEFCGE--------YCSLDCFTSAKITGRNVPREVRCR 339
            +V+Q+   P Q+  SS RG           R +C  CG+GLGQ+ VE+           YCSLDC+TSAK+TGR +  + R R
Sbjct:    1 MVYQRTASPAQS--SSGRG----------SRERCRGCGYGLGQFQVEYASNDDDGLGRGYCSLDCYTSAKVTGRALQHQPRAR 71
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10501.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJU2_ECTSI5.530e-831.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KT65_9PHAE5.880e-839.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10501contigD-dudresnayi_contig10501:4730..7684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000130.1
Exons2
Model size616
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10501.551.1prot_D-dudresnayi_contig10501.551.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10501 4835..7684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.5963278-UTR-D-dudresnayi_contig10501:4729..48341622927552.5963278-UTR-D-dudresnayi_contig10501:4729..4834Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10501 4730..4834 +
1690556804.155555-UTR-D-dudresnayi_contig10501:4729..48341690556804.155555-UTR-D-dudresnayi_contig10501:4729..4834Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10501 4730..4834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.6194882-CDS-D-dudresnayi_contig10501:4834..50291622927552.6194882-CDS-D-dudresnayi_contig10501:4834..5029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 4835..5029 +
1690556804.162795-CDS-D-dudresnayi_contig10501:4834..50291690556804.162795-CDS-D-dudresnayi_contig10501:4834..5029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 4835..5029 +
1622927552.6339388-CDS-D-dudresnayi_contig10501:7369..76841622927552.6339388-CDS-D-dudresnayi_contig10501:7369..7684Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 7370..7684 +
1690556804.175619-CDS-D-dudresnayi_contig10501:7369..76841690556804.175619-CDS-D-dudresnayi_contig10501:7369..7684Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10501 7370..7684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10501.551.1

>prot_D-dudresnayi_contig10501.551.1 ID=prot_D-dudresnayi_contig10501.551.1|Name=mRNA_D-dudresnayi_contig10501.551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=170bp
MERIVHQQRMLPTQAAPSSARGGGGGHRTVSHQRTKCLNCGFGLGQYGVE
FCGEYCSLDCFTSAKITGRNVPREVRCRRRYEAQTAPWPKGLMVEPPPSP
KPWRGRTWSNDSWRTSFTGNLTADESSQDSVTDWHGIGSDFGESGGATAA
ANDIGSDNVSVGGGGYGSGG
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mRNA from alignment at D-dudresnayi_contig10501:4730..7684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10501.551.1 ID=mRNA_D-dudresnayi_contig10501.551.1|Name=mRNA_D-dudresnayi_contig10501.551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2955bp|location=Sequence derived from alignment at D-dudresnayi_contig10501:4730..7684+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACAACGTTTGCTCCGTTTTCGAGGAGTTCAACATAACACCACACACCACA
AGTCAGCTTATCACAACTAGGACATGGATGTTCGCGTAGATACGCACTAA
ACACGATGGAGAGAATAGTCCATCAACAACGAATGCTTCCTACCCAGGCA
GCGCCGTCGTCCGCCCGCGGTGGAGGTGGAGGTCACCGGACGGTATCTCA
TCAGAGGACGAAATGCCTCAATTGTGGGTTCGGGCTTGGGCAGTACGGGG
TGGAGTTCTGTGGCGAGTACTGCTCTCTCGATTGCTTCACCTCCGCCAAG
GTACGAGACACTCGGAACACAACTCAAGAGGGATAGTGTAGATGTCTTGC
CTTAGTGTCGACGCCCGTGCTTCAGTGGTGATTGACTCGATCCTTTTTTG
GCTTTGGCACATTCCTCTCATTATTCCAAAATTAAATTATGAAAGACCGC
GCGAAACCTCTTTTGAAGCGCCAGCGTTTTTTTATGAAACGGGCCTGCAG
TTCCAAGTACCCCGCCGGTCGTGACGCGAAGCCCAGTATGAGGCACCCGG
GCAAGGTGCACGTATCGGCGGCTGGTCTCTCCCAGGTTGCGCTTGATCCA
GTGTATTTTTTTTTTATCGTATTGTAATCGGGGAGTCTCGAGACGCTTTT
TGTTTGATTTAACAAAATTGATGACCAGGGGTTTTTGCCTCGAAATTGCA
AATGTGTTGCTGTATTTGTACAACTAATCTTAATGTACGTTGTACACTGA
CTGTTTTAGGGCTCAAGAGCTCGTCTGCGTTGAATAGCGCAAGCCTCTCA
ATCCCGTACGTCATCTCGCATATCGCTTGTACTTCGTGGGATATTCTGGT
GCTGGCTGTTGTGTCGGCGATGCGGCTTGTTATTTTCATTTTCGTGGCAG
TCGTGTGTAGCCTTTTGTGTTCGTGCCTTGTGTGCGAGTGCAGCCGCCTC
CCCGCCCGCCAAATGTAGATTACTTTTTTTTTTCAAGCAATTTATTATTT
TTTAGTATAACCAGCGGTGACGTTCCACACTGGTTCTGTTCGGGATTGGA
ATATAATCGTCAACTTTCAACTCCACTGCGAGTACTACTGCTGTCTGTTG
TTTGACGTATTTGCCGATCCTCAGATAAAGTTTACTCTAGCGCAGTTCGT
AGGTCCCCTGAGTAAGCCCAAGCTCGAACTACATTATGCGCGTGAGGCCC
CTTCGTAAAGAGCTACGTATGCACTGGCAGAATCGAGAATCAGACGATAC
GCTTTTACGAGTACAGAACAACTGACTGACAGTACAGCAACAACAGTAGT
AGTAGTATTACCTGTATGTAGTATGTATACTACACGTGTGTGTGAACACT
CGTGAGCACGTGAACTTTCGATTATGATGATGATATATATCATAAAACAG
ACGGTAGAGTGATAGCACCTGTCTTGCGGCACGTCTCCTTTCGTCATACA
TGGAGATTCGTGCCCCGGCCTTGTTCTGACACAGCACGACCACCCGGGCC
TCGCGTCAACCTACACCGGCTCGTCTAGTGTACTGATACTATTAATACTA
CTGTTGTTGGTGTAGGCAATAGTCGGTGTATCGCCGATTGCTTCACAGTT
GTATCATACTCGCCTATCTCCACTCTCCATCACCTACTCTACTTGCGGAC
TACATATGATAGTTCTGACTACGAGTACTACTACAACGTACTACTACTAC
TGTACTAGTTAAGTACAGACAGTTGCACCGCTGGCTACAGATAAAGAATT
CGTGTTCTTCTTGTCAATTCATTTATTTTGCAAAACTTTCTTACCAGTTA
TTTTTGCTGTTTGATTACCCTACTCGCGAGCGCTCCGTGGCACATTTTCG
GCCCCTTTTGTATTTCATGTTACTGCTTGTTCGAGTTTGTACATGTGCCG
TATATATATCTCAGTGACGTACGTATACTATCTATCGTGACTGCTGGTGG
CCTGCTCGGCCGTATGATACGAGTAGGCAAGATTCTGACGCGTAAATACC
CCGTAGAAATGAATCGGTATGTGCCGACTACAGTAGTAGTAGTAGACGTG
CCATACAATGACTTTAGGCATACAATGACTTAGACGAAAATTATTGTTGA
CGCACCTTCTTTTTGTTGATTTCACGTTGTGCCGAGCCAAGCCGGCCCAA
CCTGACCCCAACCGTAACCGTAACCCCAACCCCAACAACTCCAACCGATC
ACCCTACGACTACGGCTCAGTTGGCATGTCCAAAATCCATGCCTTCGGCG
CTGAAATCGAGGAAACGTGGTGTTTGCTCTGTGTCGTTCTTGTATCGAAA
CTGAGGTTGGAAAGCTCCTGGAATTTGGTGATTGTTGATTGTTGATGGAA
GACTACTGTCTGTCTGTAGGGTTTATGTTGCCGACGATAGTTGTCGTCCA
TCTGGTGGACGTTACCTGCCGCATATACAATGGCAAATGATGCCCGTACG
ACAAGTGTTTTAGTTATGTTTTTGTATCGTGCTGAACCAGTTGCCGTTAT
TCTTGTTGGTTGTCCGTTCAGCGTTCCAAGCAATGCCTTATCATCGGCTG
TTTTGTTTGTATGTGGGTGTGTGTGGGTGTGTTTGTCTCATCGATTTCCT
CCACGCCCACACCGTTTCCTTGCTGTCATCGTTGGGCCAGATCACCGGAC
GTAATGTTCCACGCGAGGTACGCTGCCGACGGAGGTACGAGGCTCAAACG
GCGCCATGGCCGAAGGGGCTTATGGTAGAACCCCCACCCTCCCCCAAGCC
TTGGAGGGGCAGGACGTGGTCCAACGACAGTTGGCGCACGTCCTTCACGG
GTAACCTTACCGCTGATGAATCCTCCCAAGACTCCGTCACGGATTGGCAC
GGCATAGGTTCTGATTTCGGTGAGAGTGGAGGGGCTACCGCTGCGGCCAA
TGACATTGGTAGTGACAACGTTTCTGTCGGGGGTGGAGGGTACGGGTCAG
GCGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10501:4730..7684+

>mRNA_D-dudresnayi_contig10501.551.1 ID=mRNA_D-dudresnayi_contig10501.551.1|Name=mRNA_D-dudresnayi_contig10501.551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at D-dudresnayi_contig10501:4730..7684+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGAGAATAGTCCATCAACAACGAATGCTTCCTACCCAGGCAGCGCC
GTCGTCCGCCCGCGGTGGAGGTGGAGGTCACCGGACGGTATCTCATCAGA
GGACGAAATGCCTCAATTGTGGGTTCGGGCTTGGGCAGTACGGGGTGGAG
TTCTGTGGCGAGTACTGCTCTCTCGATTGCTTCACCTCCGCCAAGATGGA
GAGAATAGTCCATCAACAACGAATGCTTCCTACCCAGGCAGCGCCGTCGT
CCGCCCGCGGTGGAGGTGGAGGTCACCGGACGGTATCTCATCAGAGGACG
AAATGCCTCAATTGTGGGTTCGGGCTTGGGCAGTACGGGGTGGAGTTCTG
TGGCGAGTACTGCTCTCTCGATTGCTTCACCTCCGCCAAGATCACCGGAC
GTAATGTTCCACGCGAGGTACGCTGCCGACGGAGGTACGAGGCTCAAACG
GCGCCATGGCCGAAGGGGCTTATGGTAGAACCCCCACCCTCCCCCAAGCC
TTGGAGGGGCAGGACGTGGTCCAACGACAGTTGGCGCACGTCCTTCACGG
GTAACCTTACCGCTGATGAATCCTCCCAAGACTCCGTCACGGATTGGCAC
GGCATAGGTTCTGATTTCGGTGAGAGTGGAGGGGCTACCGCTGCGGCCAA
TGACATTGGTAGTGACAACGTTTCTGTCGGGGGTGGAGGGTACGGGTCAG
GCGGGATCACCGGACGTAATGTTCCACGCGAGGTACGCTGCCGACGGAGG
TACGAGGCTCAAACGGCGCCATGGCCGAAGGGGCTTATGGTAGAACCCCC
ACCCTCCCCCAAGCCTTGGAGGGGCAGGACGTGGTCCAACGACAGTTGGC
GCACGTCCTTCACGGGTAACCTTACCGCTGATGAATCCTCCCAAGACTCC
GTCACGGATTGGCACGGCATAGGTTCTGATTTCGGTGAGAGTGGAGGGGC
TACCGCTGCGGCCAATGACATTGGTAGTGACAACGTTTCTGTCGGGGGTG
GAGGGTACGGGTCAGGCGGG
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