mRNA_D-dudresnayi_contig10453.495.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10453.495.1
Unique NamemRNA_D-dudresnayi_contig10453.495.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10453.495.1 vs. uniprot
Match: A0A482SQH9_9ARCH (DUF4460 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQH9_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 5.290e-9
Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:   85 FKLVDKPEGMVNKHLHSRFVSSYRKSLIKKFMFQVHPDFFHNHKALQQINATNLSALQNLLNECHT---VQSGAKSLTFYLKPELS-NSKPQKVKVSVSRIENSIMEILE 402
            +K +    G    H HS   + Y ++L+KKF F VHPD+F+  K +Q++N  NL  L+ +L+       +    ++L FY+KP  +    P+KVK+S+ R+  S++E+L+
Sbjct:   29 YKNLASQHGSQVSHTHSPH-AHYYQALLKKFTFLVHPDYFYTFKDIQKVNNQNLQYLKEILSTPDVAVPIPPDMRTLVFYIKPMGTWMITPKKVKISLPRLHESLVEVLD 137
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10453.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482SQH9_9ARCH5.290e-933.64DUF4460 domain-containing protein (Fragment) n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10453contigD-dudresnayi_contig10453:7258..8965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue6.2e-08
Seed eggNOG ortholog10224.XP_002735104.1
Preferred nameTCAIM
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.activation inhibitor, mitochondrial
EggNOG OGs28KZH@1,2QTGC@2759,38GDF@33154,3BAZA@33208,3CRI1@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1655
Cds size1485
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10453.495.1prot_D-dudresnayi_contig10453.495.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10453 7336..8873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.6892638-UTR-D-dudresnayi_contig10453:7257..73351622927546.6892638-UTR-D-dudresnayi_contig10453:7257..7335Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10453 7258..7335 +
1690556801.6598-UTR-D-dudresnayi_contig10453:7257..73351690556801.6598-UTR-D-dudresnayi_contig10453:7257..7335Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10453 7258..7335 +
1622927546.7292376-UTR-D-dudresnayi_contig10453:8873..89651622927546.7292376-UTR-D-dudresnayi_contig10453:8873..8965Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10453 8874..8965 +
1690556801.6915092-UTR-D-dudresnayi_contig10453:8873..89651690556801.6915092-UTR-D-dudresnayi_contig10453:8873..8965Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10453 8874..8965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.7043812-CDS-D-dudresnayi_contig10453:7335..78361622927546.7043812-CDS-D-dudresnayi_contig10453:7335..7836Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10453 7336..7836 +
1690556801.6719162-CDS-D-dudresnayi_contig10453:7335..78361690556801.6719162-CDS-D-dudresnayi_contig10453:7335..7836Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10453 7336..7836 +
1622927546.7192934-CDS-D-dudresnayi_contig10453:7889..88731622927546.7192934-CDS-D-dudresnayi_contig10453:7889..8873Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10453 7890..8873 +
1690556801.68179-CDS-D-dudresnayi_contig10453:7889..88731690556801.68179-CDS-D-dudresnayi_contig10453:7889..8873Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10453 7890..8873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10453.495.1

>prot_D-dudresnayi_contig10453.495.1 ID=prot_D-dudresnayi_contig10453.495.1|Name=mRNA_D-dudresnayi_contig10453.495.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=495bp
MNFKLVDKPEGMVNKHLHSRFVSSYRKSLIKKFMFQVHPDFFHNHKALQQ
INATNLSALQNLLNECHTVQSGAKSLTFYLKPELSNSKPQKVKVSVSRIE
NSIMEILETIGVGLPIDQSNESPFYSTQSTMLATPKQTLDFLNSMYERRS
LIDWREQRCADLVSIEKTFLEITGATKVDYRNSWSAHNNSIILSRLCSLV
LQNRDTIELPWTNIIVLFTKEDCEQRINYLERTIYLAPSDVPEQILTVLQ
AVRVRDIEDSQVYVHQIQCLKRMLESQLTAIISHKLVEEGSEFEQHGRPD
VAVTVRQGLTCSVTNFYYFLHNMNGGVFVTDSSNMLNSSKSFDEVDGYDL
YGLRKHPMQIIVTVEDAHGTRLLDDGSFRVDARADKAVVYDLVLNCSREL
LEMAETYRQKARETAQLVVSVSAELGITSISYAAGVDADQFLTCLRRLNA
YLRIRPTREALLQLRGLRVLVGNYLGLADDGAVILPWDTVLPIN*
back to top

mRNA from alignment at D-dudresnayi_contig10453:7258..8965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10453.495.1 ID=mRNA_D-dudresnayi_contig10453.495.1|Name=mRNA_D-dudresnayi_contig10453.495.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1708bp|location=Sequence derived from alignment at D-dudresnayi_contig10453:7258..8965+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTATTTACCACGGTACCTCTGGATACCGGTACTCTGGGATACTATGGTAC
GATAGCAATTATAAAACCACTATGTACTATGAATTTCAAGTTAGTAGATA
AACCAGAAGGAATGGTTAATAAACATTTGCACAGTCGATTTGTAAGCTCG
TATAGGAAATCACTCATTAAGAAGTTTATGTTTCAAGTACATCCAGATTT
TTTCCACAATCATAAGGCACTACAACAAATAAATGCAACTAATCTATCAG
CATTGCAAAACCTTTTAAATGAATGTCATACAGTTCAATCTGGGGCTAAA
TCGCTTACATTTTACCTTAAGCCAGAGCTCAGCAATTCTAAACCACAAAA
AGTGAAGGTGTCAGTGTCACGTATAGAAAACAGCATTATGGAAATATTGG
AGACCATTGGAGTAGGTTTACCGATAGACCAAAGTAATGAATCACCTTTT
TATTCTACTCAAAGTACCATGCTCGCTACTCCGAAACAAACTTTGGACTT
TCTTAATTCCATGTATGAACGGAGGAGTCTTATTGACTGGAGAGAACAGC
GTTGTGCGGATCTAGTGTCTATTGAAAAGGTAAGGCAATGTTCAATTAAT
AGAGACAATTACTAACTATATTACAAATGCAGACTTTTCTTGAAATAACT
GGGGCAACTAAAGTCGATTACCGCAATTCCTGGTCTGCACACAACAACTC
TATCATATTGTCACGACTTTGTAGCTTAGTCTTGCAAAACCGAGATACGA
TTGAGTTACCATGGACAAATATAATAGTCTTATTCACCAAAGAAGATTGC
GAACAACGCATTAACTATCTTGAGCGTACAATCTACCTGGCCCCGTCAGA
CGTGCCTGAACAGATCCTGACTGTGCTCCAGGCGGTTCGTGTAAGAGATA
TAGAAGATTCCCAAGTATATGTACATCAGATTCAATGTCTTAAAAGGATG
CTTGAAAGTCAACTGACAGCAATCATTTCTCACAAGCTCGTCGAAGAAGG
CTCCGAATTTGAACAACATGGTCGCCCCGATGTTGCCGTTACTGTGCGAC
AGGGCCTTACATGCAGTGTGACCAACTTTTATTATTTTTTACACAACATG
AACGGCGGAGTATTTGTCACAGATAGTTCAAACATGCTAAATTCAAGCAA
AAGTTTCGATGAAGTTGATGGATATGACCTTTACGGATTGAGAAAACACC
CAATGCAAATAATTGTGACCGTGGAGGATGCTCATGGAACGCGCTTACTT
GACGACGGCAGCTTCCGTGTTGACGCGCGAGCGGACAAGGCGGTAGTATA
CGATCTTGTTTTGAATTGTTCACGGGAACTGCTGGAGATGGCAGAAACGT
ATCGTCAGAAAGCGAGAGAGACCGCTCAGCTGGTTGTCAGTGTGTCTGCC
GAATTAGGTATTACAAGCATAAGCTATGCGGCGGGTGTGGATGCGGACCA
ATTCCTTACATGTTTACGCAGACTGAACGCGTATCTGAGGATCCGTCCGA
CTCGAGAAGCTCTGCTGCAACTGCGGGGACTGCGCGTGCTGGTGGGGAAT
TACTTGGGATTAGCCGACGACGGCGCAGTCATCCTACCCTGGGATACTGT
ACTACCAATAAACTAGTGATGAATATGATATTATTATTGTGAATCGACAA
AGTCATTTTGGTGTCATGATGCATTTTGATAAGAAATAGGGTGAAAACAT
TACATTAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10453:7258..8965+

>mRNA_D-dudresnayi_contig10453.495.1 ID=mRNA_D-dudresnayi_contig10453.495.1|Name=mRNA_D-dudresnayi_contig10453.495.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2970bp|location=Sequence derived from alignment at D-dudresnayi_contig10453:7258..8965+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAATTTCAAGTTAGTAGATAAACCAGAAGGAATGGTTAATAAACATTT
GCACAGTCGATTTGTAAGCTCGTATAGGAAATCACTCATTAAGAAGTTTA
TGTTTCAAGTACATCCAGATTTTTTCCACAATCATAAGGCACTACAACAA
ATAAATGCAACTAATCTATCAGCATTGCAAAACCTTTTAAATGAATGTCA
TACAGTTCAATCTGGGGCTAAATCGCTTACATTTTACCTTAAGCCAGAGC
TCAGCAATTCTAAACCACAAAAAGTGAAGGTGTCAGTGTCACGTATAGAA
AACAGCATTATGGAAATATTGGAGACCATTGGAGTAGGTTTACCGATAGA
CCAAAGTAATGAATCACCTTTTTATTCTACTCAAAGTACCATGCTCGCTA
CTCCGAAACAAACTTTGGACTTTCTTAATTCCATGTATGAACGGAGGAGT
CTTATTGACTGGAGAGAACAGCGTTGTGCGGATCTAGTGTCTATTGAAAA
GATGAATTTCAAGTTAGTAGATAAACCAGAAGGAATGGTTAATAAACATT
TGCACAGTCGATTTGTAAGCTCGTATAGGAAATCACTCATTAAGAAGTTT
ATGTTTCAAGTACATCCAGATTTTTTCCACAATCATAAGGCACTACAACA
AATAAATGCAACTAATCTATCAGCATTGCAAAACCTTTTAAATGAATGTC
ATACAGTTCAATCTGGGGCTAAATCGCTTACATTTTACCTTAAGCCAGAG
CTCAGCAATTCTAAACCACAAAAAGTGAAGGTGTCAGTGTCACGTATAGA
AAACAGCATTATGGAAATATTGGAGACCATTGGAGTAGGTTTACCGATAG
ACCAAAGTAATGAATCACCTTTTTATTCTACTCAAAGTACCATGCTCGCT
ACTCCGAAACAAACTTTGGACTTTCTTAATTCCATGTATGAACGGAGGAG
TCTTATTGACTGGAGAGAACAGCGTTGTGCGGATCTAGTGTCTATTGAAA
AGACTTTTCTTGAAATAACTGGGGCAACTAAAGTCGATTACCGCAATTCC
TGGTCTGCACACAACAACTCTATCATATTGTCACGACTTTGTAGCTTAGT
CTTGCAAAACCGAGATACGATTGAGTTACCATGGACAAATATAATAGTCT
TATTCACCAAAGAAGATTGCGAACAACGCATTAACTATCTTGAGCGTACA
ATCTACCTGGCCCCGTCAGACGTGCCTGAACAGATCCTGACTGTGCTCCA
GGCGGTTCGTGTAAGAGATATAGAAGATTCCCAAGTATATGTACATCAGA
TTCAATGTCTTAAAAGGATGCTTGAAAGTCAACTGACAGCAATCATTTCT
CACAAGCTCGTCGAAGAAGGCTCCGAATTTGAACAACATGGTCGCCCCGA
TGTTGCCGTTACTGTGCGACAGGGCCTTACATGCAGTGTGACCAACTTTT
ATTATTTTTTACACAACATGAACGGCGGAGTATTTGTCACAGATAGTTCA
AACATGCTAAATTCAAGCAAAAGTTTCGATGAAGTTGATGGATATGACCT
TTACGGATTGAGAAAACACCCAATGCAAATAATTGTGACCGTGGAGGATG
CTCATGGAACGCGCTTACTTGACGACGGCAGCTTCCGTGTTGACGCGCGA
GCGGACAAGGCGGTAGTATACGATCTTGTTTTGAATTGTTCACGGGAACT
GCTGGAGATGGCAGAAACGTATCGTCAGAAAGCGAGAGAGACCGCTCAGC
TGGTTGTCAGTGTGTCTGCCGAATTAGGTATTACAAGCATAAGCTATGCG
GCGGGTGTGGATGCGGACCAATTCCTTACATGTTTACGCAGACTGAACGC
GTATCTGAGGATCCGTCCGACTCGAGAAGCTCTGCTGCAACTGCGGGGAC
TGCGCGTGCTGGTGGGGAATTACTTGGGATTAGCCGACGACGGCGCAGTC
ATCCTACCCTGGGATACTGTACTACCAATAAACTAGACTTTTCTTGAAAT
AACTGGGGCAACTAAAGTCGATTACCGCAATTCCTGGTCTGCACACAACA
ACTCTATCATATTGTCACGACTTTGTAGCTTAGTCTTGCAAAACCGAGAT
ACGATTGAGTTACCATGGACAAATATAATAGTCTTATTCACCAAAGAAGA
TTGCGAACAACGCATTAACTATCTTGAGCGTACAATCTACCTGGCCCCGT
CAGACGTGCCTGAACAGATCCTGACTGTGCTCCAGGCGGTTCGTGTAAGA
GATATAGAAGATTCCCAAGTATATGTACATCAGATTCAATGTCTTAAAAG
GATGCTTGAAAGTCAACTGACAGCAATCATTTCTCACAAGCTCGTCGAAG
AAGGCTCCGAATTTGAACAACATGGTCGCCCCGATGTTGCCGTTACTGTG
CGACAGGGCCTTACATGCAGTGTGACCAACTTTTATTATTTTTTACACAA
CATGAACGGCGGAGTATTTGTCACAGATAGTTCAAACATGCTAAATTCAA
GCAAAAGTTTCGATGAAGTTGATGGATATGACCTTTACGGATTGAGAAAA
CACCCAATGCAAATAATTGTGACCGTGGAGGATGCTCATGGAACGCGCTT
ACTTGACGACGGCAGCTTCCGTGTTGACGCGCGAGCGGACAAGGCGGTAG
TATACGATCTTGTTTTGAATTGTTCACGGGAACTGCTGGAGATGGCAGAA
ACGTATCGTCAGAAAGCGAGAGAGACCGCTCAGCTGGTTGTCAGTGTGTC
TGCCGAATTAGGTATTACAAGCATAAGCTATGCGGCGGGTGTGGATGCGG
ACCAATTCCTTACATGTTTACGCAGACTGAACGCGTATCTGAGGATCCGT
CCGACTCGAGAAGCTCTGCTGCAACTGCGGGGACTGCGCGTGCTGGTGGG
GAATTACTTGGGATTAGCCGACGACGGCGCAGTCATCCTACCCTGGGATA
CTGTACTACCAATAAACTAG
back to top