mRNA_D-dudresnayi_contig10448.487.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10448.487.1
Unique NamemRNA_D-dudresnayi_contig10448.487.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10448.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10448contigD-dudresnayi_contig10448:2098..3766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.1379454-CDS-D-dudresnayi_contig10448:2097..23281622927546.1379454-CDS-D-dudresnayi_contig10448:2097..2328Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 2098..2328 +
1690556801.389647-CDS-D-dudresnayi_contig10448:2097..23281690556801.389647-CDS-D-dudresnayi_contig10448:2097..2328Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 2098..2328 +
1622927546.1522155-CDS-D-dudresnayi_contig10448:3712..37661622927546.1522155-CDS-D-dudresnayi_contig10448:3712..3766Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 3713..3766 +
1690556801.3967948-CDS-D-dudresnayi_contig10448:3712..37661690556801.3967948-CDS-D-dudresnayi_contig10448:3712..3766Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 3713..3766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10448.487.1prot_D-dudresnayi_contig10448.487.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10448 2098..3766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10448.487.1

>prot_D-dudresnayi_contig10448.487.1 ID=prot_D-dudresnayi_contig10448.487.1|Name=mRNA_D-dudresnayi_contig10448.487.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=95bp
MQYNSSDLVELEEDVDGLWWSTLLADDSAYLKIRWSQSYVDARGIPYNEE
IIAFSGEEGPGFATATMSGSDPLCFTSSHKEKTGMRTWDQDVHHS
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mRNA from alignment at D-dudresnayi_contig10448:2098..3766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10448.487.1 ID=mRNA_D-dudresnayi_contig10448.487.1|Name=mRNA_D-dudresnayi_contig10448.487.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1669bp|location=Sequence derived from alignment at D-dudresnayi_contig10448:2098..3766+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAATACAATTCGTCAGATCTCGTCGAGCTTGAAGAAGACGTGGACGG
GTTGTGGTGGAGTACCCTGTTGGCCGACGATTCAGCCTACTTGAAGATTC
GGTGGTCACAATCCTACGTGGACGCGCGTGGCATACCTTACAACGAAGAG
ATCATCGCGTTCTCTGGGGAAGAAGGCCCTGGATTCGCGACGGCAACCAT
GTCAGGATCTGACCCACTTTGTTTCACGAGTGTAAGTGCCCTCGACAGGC
AAGCCAACGCAATGCATCACATCTTCCACGAATACGCGATATATTTGTCG
TCCAGCAATAGCGGGAGAAGGGATTGCTGTATGAGTATACTACCGGATAG
AGTGAGGGAGATGTTTTAAATTCGTCTCTTATGCTGGGGCACAGTGAACG
TACATCCCATTGGGGGAAAATTCCAATGACCCGTTCGCGACCCCCCCCCC
GTCCCCTGCAGTATATAACGAAATGTTTTCCCAGGTGTCGCATGTAAGAC
ATGTTGCCATTGGAGTTGCGTACCTTCAATGTCGCAGTTGCGTTCATCAC
GCTTGCTTACTAACGGAGTTCTACTAAGAACTAGGGTCTGTCCAATCCTC
AAACACACTGGATTTGGAAAACCCGCAGTGTGGCTGGGTCCCAACCCCAA
TATAGAGGACAGAAAATGCGTAAAACAGGGAAAGGGGGGTATCTATCCCA
GGAACCCCGCCATTTGTCGTAAGGCCTGCCGGACGTCCTCTCAACGCCAT
AACCACTACTTGTTCACGGATGTAAGGCTGCACGGCGATTTAAGCTCTCT
AACAAATGAAACAGGATCTGGGGATGACGATAGTTCACATAAATGGAGTA
TATACTTCATACTACTTGCATACCAGATATTGATTACTATGTCTGATATA
TACAGCAGGTCATTCTTATTGTGCGGAGAGGGTACGTTGTCATACCGCGT
TTGATTTGACCACATATCCCTGTCTCCAACAACTTCCATGTGATCAGAAC
GCCTGCAAATGCTATTCAGCCAAGGGAGTAGGAACCGATACGTCCTTTCA
GCCAGGTCTGTCTACCAAGCCTGCCTGCAGCTGTATGATGGATGGTAGTT
CTGTCTCCAACTATCTTGCCCGATTTCTTTGTGTTTCTTGACGTCAAACC
TTGTTACTACTCGTACAATATTATTTGAGGATTGTGTGGATACCAGGTCC
CTGTCCCCTAGATAGTACCGCCTCATTACACACAAGTTCAAGTTCCCTCG
GGTTGCTTTCTCGTTCCCCTGCCTTTGGCAGACTCTCTCCGTTCCACGAG
ACCCGAGGCACCCACCACTGGTGTCCACAATTGGTGTGTATGCACCTGGG
GCACGTCTACTTTGACGTTGTGATCACACGACCGTAATGACATTCACGTT
GTGCCCTCTGATCTTACGCTTTCGCAATCATTTGAATTTGGGATTGTTGC
GATATGATCGGGCCCACCTACCTGGAAATTTAGGCAGGAACACGGACAAC
GTAGTCCCAAAATACGGGGTATATGCGACCATCAATCCGCTCTCTGATGT
AATCTGTAACAGATACGCTCTTGGTGCACGTCTCTCCATGCCTAACACCA
TACTCTGAACTCCAGTCGCATAAGGAGAAAACTGGTATGAGGACCTGGGA
CCAAGACGTCCACCACAGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10448:2098..3766+

>mRNA_D-dudresnayi_contig10448.487.1 ID=mRNA_D-dudresnayi_contig10448.487.1|Name=mRNA_D-dudresnayi_contig10448.487.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at D-dudresnayi_contig10448:2098..3766+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAATACAATTCGTCAGATCTCGTCGAGCTTGAAGAAGACGTGGACGG
GTTGTGGTGGAGTACCCTGTTGGCCGACGATTCAGCCTACTTGAAGATTC
GGTGGTCACAATCCTACGTGGACGCGCGTGGCATACCTTACAACGAAGAG
ATCATCGCGTTCTCTGGGGAAGAAGGCCCTGGATTCGCGACGGCAACCAT
GTCAGGATCTGACCCACTTTGTTTCACGAGTATGCAATACAATTCGTCAG
ATCTCGTCGAGCTTGAAGAAGACGTGGACGGGTTGTGGTGGAGTACCCTG
TTGGCCGACGATTCAGCCTACTTGAAGATTCGGTGGTCACAATCCTACGT
GGACGCGCGTGGCATACCTTACAACGAAGAGATCATCGCGTTCTCTGGGG
AAGAAGGCCCTGGATTCGCGACGGCAACCATGTCAGGATCTGACCCACTT
TGTTTCACGAGTTCGCATAAGGAGAAAACTGGTATGAGGACCTGGGACCA
AGACGTCCACCACAGCTCGCATAAGGAGAAAACTGGTATGAGGACCTGGG
ACCAAGACGTCCACCACAGC
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