mRNA_D-dudresnayi_contig1044.476.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1044.476.1
Unique NamemRNA_D-dudresnayi_contig1044.476.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1044.476.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.710e-15
Identity = 57/153 (37.25%), Postives = 80/153 (52.29%), Query Frame = 3 
Query:    6 FYDQFEIEIIHTRRRAGARRAGVVLIDICTRRGRR**EEWPFSQSTWGP-DRGDVPA---DFLGEEGIFDNAMPLPRLTYSAKQYARMMQVGMPEMLV------RNGAPELNANIFVPGD---RWEDSNSTNASTSIRGQWNGFCTVARSSLV 425
            F+DQFEIEII     +    + +    +         E+   S+S WGP   GDVP+   D + E+G+  NA+P+P+LT+SAK+YA+MM  GMP   V      RN A ELN+ +++PG    R E   + N   +  G WN  C    S LV
Sbjct:  386 FFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRNFASELNSQLYLPGQPEGRNEKYQNINFD-AWAGAWNQHCAKIESGLV 537
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BLAST of mRNA_D-dudresnayi_contig1044.476.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.960e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3 
Query:    6 FYDQFEIEIIHTRRRAGARRAGVVLIDICTRRGRR**EEWPFSQSTWGP-DRGDVPA---DFLGEEGIFDNAMPLPRLTYSAKQYARMMQVGMPEMLVRNGA 299
            F+DQFEIEII     +    + +    +         E+   S+S WGP   GDVP+   D + E+G+  NA+P+P+LT+SAK+YA+MM  GMP   V  GA
Sbjct:  389 FFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGA 490
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BLAST of mRNA_D-dudresnayi_contig1044.476.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-10
Identity = 51/166 (30.72%), Postives = 70/166 (42.17%), Query Frame = 3 
Query:    6 FYDQFEIEIIHTRRRAGARR-----AGVVLIDICTRRGRR**EEWPFSQSTWGP-DRGDVPADFLGEEGIFDNAMPLPRLTYSAKQYARMMQVGMPEMLVRNGAP------ELNANIFVPG--------------DRWEDSNSTNASTSIRGQWNGFCTVARSSLV 425
            F+DQ+E EII     +           V  +D+     R        SQS WGP   GD P D + E+    +A+P+P+LT+SAK+YA  M +GMP   V  GA       E+N+ ++VPG              DRW              +WN  C    S  V
Sbjct:  116 FFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERS-----GLSQSMWGPASGGDAPGDLVDEQASPQHAIPMPKLTHSAKKYAETMNIGMPCTPVHTGAERRKFTSEMNSYLYVPGEARGRRQIYQTINFDRWSH------------EWNNHCAQIESGAV 264
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BLAST of mRNA_D-dudresnayi_contig1044.476.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.060e-9
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 3 
Query:    3 GFYDQFEIEIIHTRRRA--------GARRAGVVLIDICTRRGRR**EEWPFSQSTWG-PDRGDVPADFLGEEGIFDNAMPLPRLTYSAKQYARMMQVGMPE 278
            G +DQF+IEII     +          R + +   D   R G         +QS  G  D GD   D LGE+ +  NA+PLP++T+SA +YARMM VGMPE
Sbjct:  123 GCFDQFDIEIIQRETTSWDLDSPVFSERVSALDAADTGQRSG--------LAQSMCGGADAGDSGVDALGEQEMVQNAVPLPKITHSANEYARMMNVGMPE 215
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1044.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KLP1_9PHAE1.710e-1537.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE6.960e-1140.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U3_9PHAE1.530e-1030.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE7.060e-939.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1044contigD-dudresnayi_contig1044:3208..3803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1044.476.1prot_D-dudresnayi_contig1044.476.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1044 3417..3635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2334135-UTR-D-dudresnayi_contig1044:3207..34161622927545.2334135-UTR-D-dudresnayi_contig1044:3207..3416Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1044 3208..3416 +
1690556800.9195173-UTR-D-dudresnayi_contig1044:3207..34161690556800.9195173-UTR-D-dudresnayi_contig1044:3207..3416Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1044 3208..3416 +
1622927545.262977-UTR-D-dudresnayi_contig1044:3635..38031622927545.262977-UTR-D-dudresnayi_contig1044:3635..3803Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1044 3636..3803 +
1690556800.9357023-UTR-D-dudresnayi_contig1044:3635..38031690556800.9357023-UTR-D-dudresnayi_contig1044:3635..3803Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1044 3636..3803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2477741-CDS-D-dudresnayi_contig1044:3416..36351622927545.2477741-CDS-D-dudresnayi_contig1044:3416..3635Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1044 3417..3635 +
1690556800.9272683-CDS-D-dudresnayi_contig1044:3416..36351690556800.9272683-CDS-D-dudresnayi_contig1044:3416..3635Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1044 3417..3635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1044.476.1

>prot_D-dudresnayi_contig1044.476.1 ID=prot_D-dudresnayi_contig1044.476.1|Name=mRNA_D-dudresnayi_contig1044.476.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=73bp
MPLPRLTYSAKQYARMMQVGMPEMLVRNGAPELNANIFVPGDRWEDSNST
NASTSIRGQWNGFCTVARSSLV*
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mRNA from alignment at D-dudresnayi_contig1044:3208..3803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1044.476.1 ID=mRNA_D-dudresnayi_contig1044.476.1|Name=mRNA_D-dudresnayi_contig1044.476.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=596bp|location=Sequence derived from alignment at D-dudresnayi_contig1044:3208..3803+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAGGGTTTTACGATCAGTTTGAGATCGAGATCATCCACACGAGAAGGCGA
GCTGGTGCTCGGAGGGCGGGAGTTGTTTTAATCGATATTTGTACTCGACG
CGGTAGACGCTGATGAGAGGAGTGGCCCTTTTCTCAGAGCACGTGGGGAC
CTGATAGGGGTGATGTGCCAGCAGATTTTCTCGGCGAGGAAGGAATATTT
GACAACGCTATGCCCCTCCCGCGACTGACGTACTCCGCGAAGCAATATGC
ACGCATGATGCAAGTCGGGATGCCCGAAATGCTCGTGCGCAATGGTGCCC
CCGAACTCAACGCCAATATCTTTGTTCCAGGCGACCGATGGGAAGATTCT
AATAGCACCAACGCGTCAACTTCGATACGCGGGCAGTGGAATGGATTCTG
TACTGTGGCAAGATCGAGTCTGGTCTAGCGGAGTGGGAACCCTTGTTTCG
GAAAACCTCCAAACAACTGCAGGCGTATTATGAGAAATTCAAACAACGCA
CCAACGCCACGGCGCAATCTGCTTTAATTCGGTCGGCGACGTAGTACCTT
CTCCTGCTTCGTGGATTCGTTCTGGGGCAGATTTTGGTGGCAGTGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1044:3208..3803+

>mRNA_D-dudresnayi_contig1044.476.1 ID=mRNA_D-dudresnayi_contig1044.476.1|Name=mRNA_D-dudresnayi_contig1044.476.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig1044:3208..3803+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCCCTCCCGCGACTGACGTACTCCGCGAAGCAATATGCACGCATGAT
GCAAGTCGGGATGCCCGAAATGCTCGTGCGCAATGGTGCCCCCGAACTCA
ACGCCAATATCTTTGTTCCAGGCGACCGATGGGAAGATTCTAATAGCACC
AACGCGTCAACTTCGATACGCGGGCAGTGGAATGGATTCTGTACTGTGGC
AAGATCGAGTCTGGTCTAGATGCCCCTCCCGCGACTGACGTACTCCGCGA
AGCAATATGCACGCATGATGCAAGTCGGGATGCCCGAAATGCTCGTGCGC
AATGGTGCCCCCGAACTCAACGCCAATATCTTTGTTCCAGGCGACCGATG
GGAAGATTCTAATAGCACCAACGCGTCAACTTCGATACGCGGGCAGTGGA
ATGGATTCTGTACTGTGGCAAGATCGAGTCTGGTCTAG
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