mRNA_D-dudresnayi_contig10437.473.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10437.473.1
Unique NamemRNA_D-dudresnayi_contig10437.473.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10437.473.1 vs. uniprot
Match: A0A6H5KU49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU49_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-16
Identity = 53/100 (53.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    7 LSAFSSLEAHNGCRALFNHAKGWAYIGPAGPIDSADFP-GTVAYEYK----GKTPSSATRGGAPPPAXXXQPTRPGDGLGRKTNEARLAYLDAADLEHLV 291
            LSAF+S +AHNGCRALFN  +GWAY GPAG ID    P GTV+Y YK    G T +S +  G           +PGD L RK+NE R  Y DA DL HLV
Sbjct:   16 LSAFTSGDAHNGCRALFNGTEGWAYFGPAGEIDEGALPAGTVSYPYKSGMFGMT-ASGSGSGRDGGGTSQAAKKPGDDLSRKSNEMRGVYFDAKDLAHLV 114
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BLAST of mRNA_D-dudresnayi_contig10437.473.1 vs. uniprot
Match: D8LKD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-14
Identity = 55/106 (51.89%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    7 LSAFSSLEAHNGCRALFNHAKGWAYIGPAGPIDSADFP-GTVAYEYK---------GKTPSSATRGGAPPPAXXXQPTR-PGDGLGRKTNEARLAYLDAADLEHLV 291
            LSAF+S +AHNGCRALFN   GWAY GPAG ID    P GTV+Y Y          G T S +         XXXQ  + PGD L RK+NE R  Y DA DL HLV
Sbjct:   16 LSAFTSGDAHNGCRALFNGTAGWAYFGPAGEIDEGALPAGTVSYPYNVKGDKSGLFGVTASGSGXXXXXXXXXXXQAAKKPGDDLNRKSNEMRGVYFDAKDLAHLV 121
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10437.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU49_9PHAE1.180e-1653.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD3_ECTSI1.240e-1451.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10437contigD-dudresnayi_contig10437:7597..9597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001200.1
Exons3
Model size1050
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10437.473.1prot_D-dudresnayi_contig10437.473.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10437 7597..9597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.7189877-CDS-D-dudresnayi_contig10437:7596..77311622927543.7189877-CDS-D-dudresnayi_contig10437:7596..7731Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 7597..7731 -
1690556800.6343217-CDS-D-dudresnayi_contig10437:7596..77311690556800.6343217-CDS-D-dudresnayi_contig10437:7596..7731Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 7597..7731 -
1622927543.7308674-CDS-D-dudresnayi_contig10437:8001..80651622927543.7308674-CDS-D-dudresnayi_contig10437:8001..8065Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 8002..8065 -
1690556800.6439874-CDS-D-dudresnayi_contig10437:8001..80651690556800.6439874-CDS-D-dudresnayi_contig10437:8001..8065Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 8002..8065 -
1622927543.7428703-CDS-D-dudresnayi_contig10437:8746..95971622927543.7428703-CDS-D-dudresnayi_contig10437:8746..9597Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 8747..9597 -
1690556800.6515443-CDS-D-dudresnayi_contig10437:8746..95971690556800.6515443-CDS-D-dudresnayi_contig10437:8746..9597Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10437 8747..9597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10437.473.1

>prot_D-dudresnayi_contig10437.473.1 ID=prot_D-dudresnayi_contig10437.473.1|Name=mRNA_D-dudresnayi_contig10437.473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=350bp
MSLSAFSSLEAHNGCRALFNHAKGWAYIGPAGPIDSADFPGTVAYEYKGK
TPSSATRGGAPPPAPPPQPTRPGDGLGRKTNEARLAYLDAADLEHLVHHA
ERFSSPPCSAVPGDGLEEGGDGDSGGGGGAEGPQEVLRRGRPIVLTLQAI
LAATTSSPRSPATSPSATADVTVGDGEGSTATVISATAGEEGGVGDSGDE
TVNHPPRVSDYADFPPLRGTRTTTGLLLAPPITMMKRRKKRQPAASGAAA
VSTKAVVDREYEDDAGGVSCSEAVAATSVAAAAHDGGAVAAVAVAVALQR
AANTSAAVGEGGSKASARNAGREDEDPYYARKRVGAFAFKTKPRGKAHK*
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mRNA from alignment at D-dudresnayi_contig10437:7597..9597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10437.473.1 ID=mRNA_D-dudresnayi_contig10437.473.1|Name=mRNA_D-dudresnayi_contig10437.473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2001bp|location=Sequence derived from alignment at D-dudresnayi_contig10437:7597..9597- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGCTGTCGGCCTTCTCCTCGCTCGAGGCCCACAACGGTTGCCGAGC
ACTTTTTAACCACGCCAAGGGCTGGGCCTACATCGGCCCCGCGGGTCCCA
TCGATTCCGCCGATTTTCCTGGCACCGTGGCCTACGAGTACAAGGGGAAA
ACTCCTTCCTCCGCCACCCGCGGAGGGGCACCGCCGCCGGCGCCCCCGCC
GCAGCCGACTCGACCGGGGGACGGGCTAGGCCGAAAGACCAACGAGGCAC
GCCTCGCCTATCTCGATGCGGCGGACCTGGAACACCTCGTGCACCACGCG
GAGCGCTTCTCCTCCCCCCCCTGCTCGGCGGTGCCCGGGGATGGACTTGA
GGAGGGAGGCGATGGCGATAGCGGTGGCGGTGGCGGTGCGGAGGGGCCGC
AGGAGGTGCTTCGACGCGGACGTCCGATCGTTCTTACCCTCCAGGCTATT
CTAGCGGCAACAACTTCGTCGCCGCGTTCCCCTGCCACGTCCCCCTCTGC
TACCGCAGACGTCACTGTTGGTGACGGTGAGGGTAGCACCGCGACGGTGA
TATCCGCCACAGCCGGAGAAGAAGGAGGCGTTGGGGATTCCGGGGACGAG
ACGGTAAACCACCCCCCCCGGGTGTCGGACTACGCGGATTTTCCGCCTTT
GCGCGGCACCCGGACGACCACGGGTTTGCTGCTCGCGCCCCCGATAACGA
TGATGAAGCGACGAAAAAAACGACAGCCTGCGGCATCGGGTGCGGCGGCC
GTGTCTACAAAGGCGGTGGTGGATAGGGAATACGAAGATGATGCGGGTGG
GGTTTCCTGTTCGGAGGCGGTAGCTGCTACTTCTGTTGCCGCGGCGGCAC
AGTCGGGCGTGGGGCGTGGGGTGTCGAGGGTAGGGTGGTGGTTGCGATGG
GGCGAAAGCGGCGATAACCGCGAGAACGACGTTCCTGTCGCTGTCAGCAC
CGCCGCTCCTGCTGCTGCTGCTGCTGCTTCTGCTGCAGCCGCCGCGGCCG
AGGCCCGGCATTGTCCCCTTTCCTCTTCGGCGACGGACAGCAATGTTGTT
ACCGTCGGCGGTACCGATGGAATACACGCTTTGTACGAGACAATCCCCGG
CATCGAGGGCTGGCAGGTGGTGTCGGGAGCGGCCGGTGCTTCAGAAACAT
CTCGTGGCGGCCTTGGTGAACGGGTGAAGCCTTCTGCTTTGCAGGCAGAC
CCTCCAGTCAGTGCGTGGGCGCTGGTGGAAGATAACTGGGCAGGGAGGAC
TGGAACTCCCTCTAGAGGCGTTACTGCGGACGAATTGGTGGTGGAGGACG
ATGCCGCGTCCTCATGGTGCGATTGTGCTGTCAGTTGCGACGCTGGCGAG
GTGGAGGTGGTGGAGGAGGAGGTCGTCGAAACGTTGCAAGGTGGACGTGG
CGTGGTGATCGTTGAGGCGGGCGCGGGTAGTGGCGAAGCGGACCGAGACG
TGGACCCTGCTGCTGCTGCTGCTGCTCCCCTTGTTGATGTCAGCCATGAC
GCGATGTGCAACAGTGGCGAAGGCGTCGGCAGCGATGGGGGTGCCGTAGC
CGCCGTGGCCGTTGCTGTTGCTCTGCAGCGCGCCGCTAACACTAGCGTCT
GGGACCGCGGTGAAGACGCCAACCCCGAACACCCGGACCAGCAGCATCAT
CGTTCCGAAAATGTCCTCCCCACGACGACGGGCGTTCCTCAGAACGTTCC
CCGATCGTTCCGAGACATGCTCATGACTCCGACTGCCACGGGGGAGACGT
GGTTTTCACAACCATCGAAGGCGGTAGTAGGCTGCGGACACCAGACGCCC
CTCCTTTCGAACGGGCCTACCCTTGTGGACGGCACGAACGGGAGCGCAGT
TTATCTGTGGCGAAAGGCTGCGGTGGGGGAAGGGGGCAGTAAAGCTTCGG
CTCGAAATGCGGGGAGGGAAGACGAAGATCCGTACTACGCGAGGAAGAGA
GTGGGCGCTTTCGCGTTCAAGACCAAGCCTCGTGGGAAAGCCCACAAATA
G
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10437:7597..9597-

>mRNA_D-dudresnayi_contig10437.473.1 ID=mRNA_D-dudresnayi_contig10437.473.1|Name=mRNA_D-dudresnayi_contig10437.473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at D-dudresnayi_contig10437:7597..9597- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGCTGTCGGCCTTCTCCTCGCTCGAGGCCCACAACGGTTGCCGAGC
ACTTTTTAACCACGCCAAGGGCTGGGCCTACATCGGCCCCGCGGGTCCCA
TCGATTCCGCCGATTTTCCTGGCACCGTGGCCTACGAGTACAAGGGGAAA
ACTCCTTCCTCCGCCACCCGCGGAGGGGCACCGCCGCCGGCGCCCCCGCC
GCAGCCGACTCGACCGGGGGACGGGCTAGGCCGAAAGACCAACGAGGCAC
GCCTCGCCTATCTCGATGCGGCGGACCTGGAACACCTCGTGCACCACGCG
GAGCGCTTCTCCTCCCCCCCCTGCTCGGCGGTGCCCGGGGATGGACTTGA
GGAGGGAGGCGATGGCGATAGCGGTGGCGGTGGCGGTGCGGAGGGGCCGC
AGGAGGTGCTTCGACGCGGACGTCCGATCGTTCTTACCCTCCAGGCTATT
CTAGCGGCAACAACTTCGTCGCCGCGTTCCCCTGCCACGTCCCCCTCTGC
TACCGCAGACGTCACTGTTGGTGACGGTGAGGGTAGCACCGCGACGGTGA
TATCCGCCACAGCCGGAGAAGAAGGAGGCGTTGGGGATTCCGGGGACGAG
ACGGTAAACCACCCCCCCCGGGTGTCGGACTACGCGGATTTTCCGCCTTT
GCGCGGCACCCGGACGACCACGGGTTTGCTGCTCGCGCCCCCGATAACGA
TGATGAAGCGACGAAAAAAACGACAGCCTGCGGCATCGGGTGCGGCGGCC
GTGTCTACAAAGGCGGTGGTGGATAGGGAATACGAAGATGATGCGGGTGG
GGTTTCCTGTTCGGAGGCGGTAGCTGCTACTTCTGTTGCCGCGGCGGCAC
AATGTCGCTGTCGGCCTTCTCCTCGCTCGAGGCCCACAACGGTTGCCGAG
CACTTTTTAACCACGCCAAGGGCTGGGCCTACATCGGCCCCGCGGGTCCC
ATCGATTCCGCCGATTTTCCTGGCACCGTGGCCTACGAGTACAAGGGGAA
AACTCCTTCCTCCGCCACCCGCGGAGGGGCACCGCCGCCGGCGCCCCCGC
CGCAGCCGACTCGACCGGGGGACGGGCTAGGCCGAAAGACCAACGAGGCA
CGCCTCGCCTATCTCGATGCGGCGGACCTGGAACACCTCGTGCACCACGC
GGAGCGCTTCTCCTCCCCCCCCTGCTCGGCGGTGCCCGGGGATGGACTTG
AGGAGGGAGGCGATGGCGATAGCGGTGGCGGTGGCGGTGCGGAGGGGCCG
CAGGAGGTGCTTCGACGCGGACGTCCGATCGTTCTTACCCTCCAGGCTAT
TCTAGCGGCAACAACTTCGTCGCCGCGTTCCCCTGCCACGTCCCCCTCTG
CTACCGCAGACGTCACTGTTGGTGACGGTGAGGGTAGCACCGCGACGGTG
ATATCCGCCACAGCCGGAGAAGAAGGAGGCGTTGGGGATTCCGGGGACGA
GACGGTAAACCACCCCCCCCGGGTGTCGGACTACGCGGATTTTCCGCCTT
TGCGCGGCACCCGGACGACCACGGGTTTGCTGCTCGCGCCCCCGATAACG
ATGATGAAGCGACGAAAAAAACGACAGCCTGCGGCATCGGGTGCGGCGGC
CGTGTCTACAAAGGCGGTGGTGGATAGGGAATACGAAGATGATGCGGGTG
GGGTTTCCTGTTCGGAGGCGGTAGCTGCTACTTCTGTTGCCGCGGCGGCA
CACGATGGGGGTGCCGTAGCCGCCGTGGCCGTTGCTGTTGCTCTGCAGCG
CGCCGCTAACACTAGCCGATGGGGGTGCCGTAGCCGCCGTGGCCGTTGCT
GTTGCTCTGCAGCGCGCCGCTAACACTAGCGCTGCGGTGGGGGAAGGGGG
CAGTAAAGCTTCGGCTCGAAATGCGGGGAGGGAAGACGAAGATCCGTACT
ACGCGAGGAAGAGAGTGGGCGCTTTCGCGTTCAAGACCAAGCCTCGTGGG
AAAGCCCACAAATAGGCTGCGGTGGGGGAAGGGGGCAGTAAAGCTTCGGC
TCGAAATGCGGGGAGGGAAGACGAAGATCCGTACTACGCGAGGAAGAGAG
TGGGCGCTTTCGCGTTCAAGACCAAGCCTCGTGGGAAAGCCCACAAATAG
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