mRNA_D-dudresnayi_contig10432.471.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10432.471.1
Unique NamemRNA_D-dudresnayi_contig10432.471.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10432.471.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.910e-62
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 3 
Query:    3 QVLTATLNMSFNEAIRQSTLVSHASEEPGARAAGFVGTSFAYIGVISGALQLIVMPWAMLRVNPAFLLRALPVVAGSGFLVTFVSPGFRMAAAAFAVTKVLDYSVRGTALELVYQPMPDHERLLGKEAIATVGVRVGRTAAHVTLYLCS 449
            QVL ATLN+SFNEAIRQ      AS E GA AAGFVG SFA IG++SG LQL+VMPWAM+RVNP+ LL+ LPVVAG GFLVTFVSPGFR A  AF+VTK+L+YSVRGT LELVYQ M D ER LGKEAIATVGVR+GRT A V LYLCS
Sbjct:  242 QVLVATLNLSFNEAIRQGLPREEASGETGAGAAGFVGNSFAVIGLVSGILQLVVMPWAMVRVNPSLLLKTLPVVAGGGFLVTFVSPGFRTATVAFSVTKILEYSVRGTVLELVYQAMADDERRLGKEAIATVGVRIGRTTAQVLLYLCS 390
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BLAST of mRNA_D-dudresnayi_contig10432.471.1 vs. uniprot
Match: A0A7S4EQV7_9STRA (ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQV7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.550e-11
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 3 
Query:    3 QVLTATLNMSFNEAIRQSTLVSHASEEPGARAAGFVGTSFAYIGVISGALQLIVMPWAMLRVNPAFLLRALPVVAGSGFLVTFVSP-----GFRMAAAAFAVTKVLDYSVRGTALELVYQPMPDHERLLGKEAIATVGVRVGRTAAHVTL 437
            Q L+  LN+ F   ++ S  V       G RAA F G  +A +  ISGA+Q  ++P     + P ++ R LP++         V P     G  +AAA+F   K  DYS+RG A EL YQP+    R LGKE I     R G++   + L
Sbjct:  441 QSLSTVLNICFVRQLKASMPVD------GDRAA-FTGQFYAGVNGISGAMQFFILPLLRKYLEPQWIYRFLPIILMPLLTYAAVVPASANSGLWIAAASFFALKSTDYSIRGVATELTYQPLDFDARFLGKEVIGVFANRFGKSGTSMIL 583
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BLAST of mRNA_D-dudresnayi_contig10432.471.1 vs. uniprot
Match: A0A448YY85_9STRA (ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY85_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.660e-10
Identity = 51/149 (34.23%), Postives = 72/149 (48.32%), Query Frame = 3 
Query:    3 QVLTATLNMSFNEAIRQSTLVSHASEEPGARAAGFVGTSFAYIGVISGALQLIVMPWAMLRVNPAFLLRALPVVAGSGFLVTFVSP----GFRMAAAAFAVTKVLDYSVRGTALELVYQPMPDHERLLGKEAIATVGVRVGRTAAHVTL 437
            Q L+  LN+ F   +++S  +       G RAA F G  +A +  ISG +Q  V+P     + P ++ R LP+V         V P    G  +AA +F   K  DYS+RG A EL YQP+    R LGKE I     R G++   + L
Sbjct:  446 QSLSTVLNVCFVRQLKESMPID------GERAA-FTGQFYAGVNGISGLMQFFVLPLLRKYLEPQWIYRLLPMVLMPLLTYAAVGPSANNGLWIAAVSFFALKSTDYSIRGVATELAYQPLDFDARYLGKEVIGVFANRFGKSGTSMIL 587
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BLAST of mRNA_D-dudresnayi_contig10432.471.1 vs. uniprot
Match: A0A7S2PQM4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQM4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.260e-8
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 3 
Query:    3 QVLTATLNMSFNEAIRQSTLVSHASEEPGARAAGFVGTSFAYIGVISGALQLIVMPWAMLRVNPAFLLRALP-VVAGSGFLVTFV-SPGFRMAAAAFAVTKVLDYSVRGTALELVYQPMPDHERLLGKEAIATVGVRVGRTAAHVTL 437
            Q L   LN+S+   ++ S  + H     GA  A + G  +A +  ISG LQ   +P  M  V+   +   +P ++   G L + V +    MA+ +F   K+++YSVRG A ELVY  + D  R  GK+ I T GV++ ++     L
Sbjct:  251 QTLATILNVSYITKLKDS--LPH-----GADRASWTGRFYAIVNGISGTLQFTALPSLMSNVDQHNVWVTIPTIMLFLGSLSSIVGNTSLFMASVSFGSLKIMEYSVRGVATELVYVSLDDESRYSGKQIITTFGVKIAKSLTSFLL 390
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10432.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J832_9PHAE1.910e-6274.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4EQV7_9STRA6.550e-1134.67ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia a... [more]
A0A448YY85_9STRA1.660e-1034.23ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2PQM4_9STRA7.260e-831.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10432contigD-dudresnayi_contig10432:5994..7637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog2850.Phatr54110
Preferred nameNTT6
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2CHKX@1,2SD3X@2759,2XAW7@2836
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size451
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10432.471.1prot_D-dudresnayi_contig10432.471.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10432 5994..7611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.545182-CDS-D-dudresnayi_contig10432:5993..60671622927543.545182-CDS-D-dudresnayi_contig10432:5993..6067Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 5994..6067 -
1690556800.44712-CDS-D-dudresnayi_contig10432:5993..60671690556800.44712-CDS-D-dudresnayi_contig10432:5993..6067Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 5994..6067 -
1622927543.5604808-CDS-D-dudresnayi_contig10432:6687..67431622927543.5604808-CDS-D-dudresnayi_contig10432:6687..6743Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 6688..6743 -
1690556800.470396-CDS-D-dudresnayi_contig10432:6687..67431690556800.470396-CDS-D-dudresnayi_contig10432:6687..6743Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 6688..6743 -
1622927543.5764475-CDS-D-dudresnayi_contig10432:7030..72161622927543.5764475-CDS-D-dudresnayi_contig10432:7030..7216Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 7031..7216 -
1690556800.4894953-CDS-D-dudresnayi_contig10432:7030..72161690556800.4894953-CDS-D-dudresnayi_contig10432:7030..7216Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 7031..7216 -
1622927543.589929-CDS-D-dudresnayi_contig10432:7504..76111622927543.589929-CDS-D-dudresnayi_contig10432:7504..7611Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 7505..7611 -
1690556800.5012681-CDS-D-dudresnayi_contig10432:7504..76111690556800.5012681-CDS-D-dudresnayi_contig10432:7504..7611Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10432 7505..7611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.6028686-UTR-D-dudresnayi_contig10432:7611..76371622927543.6028686-UTR-D-dudresnayi_contig10432:7611..7637Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10432 7612..7637 -
1690556800.510748-UTR-D-dudresnayi_contig10432:7611..76371690556800.510748-UTR-D-dudresnayi_contig10432:7611..7637Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10432 7612..7637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10432.471.1

>prot_D-dudresnayi_contig10432.471.1 ID=prot_D-dudresnayi_contig10432.471.1|Name=mRNA_D-dudresnayi_contig10432.471.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=141bp
MSFNEAIRQSTLVSHASEEPGARAAGFVGTSFAYIGVISGALQLIVMPWA
MLRVNPAFLLRALPVVAGSGFLVTFVSPGFRMAAAAFAVTKVLDYSVRGT
ALELVYQPMPDHERLLGKEAIATVGVRVGRTAAHVTLYLCS
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mRNA from alignment at D-dudresnayi_contig10432:5994..7637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10432.471.1 ID=mRNA_D-dudresnayi_contig10432.471.1|Name=mRNA_D-dudresnayi_contig10432.471.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1644bp|location=Sequence derived from alignment at D-dudresnayi_contig10432:5994..7637- (Desmarestia dudresnayi DdudBR16 monoicous)
GTCAGGTGTTGACAGCGACTCTGAATATGAGCTTTAACGAGGCCATTAGG
CAAAGCACTCTTGTGTCCCACGCTTCGGAGGAGCCTGGGGCCCGAGCTGC
TGGCTTTGTGGGGACGTCCTTTGCTTACATCGGGTAAACGTTGCTGTTCA
ACTCTCAGAGTCGTACGATAGGGTACGGACGCATCCTCATAGACTCACGG
TACGAAATCATGAGCATAGACTAGGGCGATGTTTGGGTTTGCGGGGGACT
TGGTATCTTCGTTTTTCCCTGCCGTTCCGTTTGGGTGCACACGGTGGCGC
AACGATGAAACTGTAAAAACCAAACGCAGAGTAGAGCGTGCGTTGTCGGG
GTGATATTATTGTCAAACATTTTGTGTGCTGTTTTCGTGCATGGGTATGT
CCCGATCTGTTACTCCCCCAGGGTAATCTCGGGGGCGCTGCAGCTGATAG
TGATGCCGTGGGCTATGCTCCGCGTCAACCCTGCCTTTCTTCTGAGAGCC
TTGCCCGTGGTTGCCGGTAGCGGATTTCTGGTGACATTCGTGTCCCCGGG
GTTTCGAATGGCCGCGGCGGCCTTTGCCGTTACCAAGGTCCTCGACTACA
GTGTAAGGTGGGCGCTGACGAAGCATCGCTAACGTTAAAATATGTCACGT
TACGAAAGCGAACAACAACAGCGTTGTTTTCAAGACGTGCGGATTTGAAA
CTCTGAATGCTACTACTGTGCAGCAATAACGTCGTAGATGTACCAACAAA
CAACGGTACTTGCCACGCGTCTTTATTTTTCTCGATTTTTTCAATGTCGC
AACCGACCAATGCCTGGAACTCTGGTAGACACGTGGCCACGTCCTGTAAA
AAGATTTGTGGTTGTCGATCCCTGCCTCGTTGTTATGGTGACAGGGGAAC
CGCTCTGGAGTTGGTGTACCAACCGATGCCAGATCACGAACGCCTCCTAG
GTGAGCCCCCCCCCCCCCCCTCCAACTTCAAGCAAACGCGTGAGCAGATC
CCCCAAGAAACGAAGCGTTTTCCCCAGCACACAGCACACGCGAGTGCAGT
GTGACACCGTGTGTCTGGCGCGAAACAATGGAATAGTAGCATGGAGCATC
ATACTGACTAGAGTTTAAAGTATCATACCAGGTAGTTCGTATGACAAGTA
TGACACCTACTTCTTTAGGTTGTCGTGCGGGCACGTCGACGCGGTGTGAT
ACGGGCGGACGACATGCGATACTATTGCGGCGATTCGGATGGCCTCCGAT
GAGACTCGGTAGTGTGCTTATTTTTTTGTTCACATACACCACCAGCCGTG
CGTGACATGGTACGTTCTATTTCCCATTGCACGCCGTACTTGTTCAGTCA
CCATGCTTGCCTGTTGTGTGTCGACTGCAGACACCCGTCTCAATCGTCAG
GGATAATTTGAGAGGGAAAAGATGCGTAGGTTTGGAGCTTTTGTGAAAAA
GTCAGACCCACGCACGCACTTTATTATGATTGGTCTGGGAAATGCCTTTT
TTTCGGAGCTAGAATCCCCTCTAAAGGAATAGTTGCTTGTTCTGTCGATC
ATACTCATGCCTCTCACCAGGGAAGGAGGCCATCGCAACCGTGGGCGTCC
GAGTCGGCCGAACCGCCGCGCACGTTACCCTTTACCTGTGCTCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10432:5994..7637-

>mRNA_D-dudresnayi_contig10432.471.1 ID=mRNA_D-dudresnayi_contig10432.471.1|Name=mRNA_D-dudresnayi_contig10432.471.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at D-dudresnayi_contig10432:5994..7637- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGCTTTAACGAGGCCATTAGGCAAAGCACTCTTGTGTCCCACGCTTC
GGAGGAGCCTGGGGCCCGAGCTGCTGGCTTTGTGGGGACGTCCTTTGCTT
ACATCGGATGAGCTTTAACGAGGCCATTAGGCAAAGCACTCTTGTGTCCC
ACGCTTCGGAGGAGCCTGGGGCCCGAGCTGCTGGCTTTGTGGGGACGTCC
TTTGCTTACATCGGGGTAATCTCGGGGGCGCTGCAGCTGATAGTGATGCC
GTGGGCTATGCTCCGCGTCAACCCTGCCTTTCTTCTGAGAGCCTTGCCCG
TGGTTGCCGGTAGCGGATTTCTGGTGACATTCGTGTCCCCGGGGTTTCGA
ATGGCCGCGGCGGCCTTTGCCGTTACCAAGGTCCTCGACTACAGTGTAAG
GGTAATCTCGGGGGCGCTGCAGCTGATAGTGATGCCGTGGGCTATGCTCC
GCGTCAACCCTGCCTTTCTTCTGAGAGCCTTGCCCGTGGTTGCCGGTAGC
GGATTTCTGGTGACATTCGTGTCCCCGGGGTTTCGAATGGCCGCGGCGGC
CTTTGCCGTTACCAAGGTCCTCGACTACAGTGTAAGGGGAACCGCTCTGG
AGTTGGTGTACCAACCGATGCCAGATCACGAACGCCTCCTAGGGGAACCG
CTCTGGAGTTGGTGTACCAACCGATGCCAGATCACGAACGCCTCCTAGGG
AAGGAGGCCATCGCAACCGTGGGCGTCCGAGTCGGCCGAACCGCCGCGCA
CGTTACCCTTTACCTGTGCTCGGGAAGGAGGCCATCGCAACCGTGGGCGT
CCGAGTCGGCCGAACCGCCGCGCACGTTACCCTTTACCTGTGCTCG
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