mRNA_D-dudresnayi_contig1043.468.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1043.468.1
Unique NamemRNA_D-dudresnayi_contig1043.468.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1043.468.1 vs. uniprot
Match: A0A7S1XUY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-9
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:  363 MIVSSSPPLQRVHEILQRMQTDTENVECLKTCCGALAILAKDEANKLLIARD 518
            M  S + PL RV E+LQRMQ   ++ + LKTC G LAIL++DEANKLLIARD
Sbjct:    1 MASSHASPLHRVKEMLQRMQGAVDDPQSLKTCMGVLAILSRDEANKLLIARD 52
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1043.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1XUY7_9STRA1.050e-961.54Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1043contigD-dudresnayi_contig1043:24219..28819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size518
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1043.468.1prot_D-dudresnayi_contig1043.468.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1043 24581..28819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.8400764-UTR-D-dudresnayi_contig1043:24218..245801622927542.8400764-UTR-D-dudresnayi_contig1043:24218..24580Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1043 24219..24580 +
1690556800.2930112-UTR-D-dudresnayi_contig1043:24218..245801690556800.2930112-UTR-D-dudresnayi_contig1043:24218..24580Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1043 24219..24580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.8551877-CDS-D-dudresnayi_contig1043:24580..246401622927542.8551877-CDS-D-dudresnayi_contig1043:24580..24640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 24581..24640 +
1690556800.300094-CDS-D-dudresnayi_contig1043:24580..246401690556800.300094-CDS-D-dudresnayi_contig1043:24580..24640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 24581..24640 +
1622927542.8653502-CDS-D-dudresnayi_contig1043:28723..288191622927542.8653502-CDS-D-dudresnayi_contig1043:28723..28819Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 28724..28819 +
1690556800.312886-CDS-D-dudresnayi_contig1043:28723..288191690556800.312886-CDS-D-dudresnayi_contig1043:28723..28819Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 28724..28819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1043.468.1

>prot_D-dudresnayi_contig1043.468.1 ID=prot_D-dudresnayi_contig1043.468.1|Name=mRNA_D-dudresnayi_contig1043.468.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=52bp
MIVSSSPPLQRVHEILQRMQTDTENVECLKTCCGALAILAKDEANKLLIA
RD
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mRNA from alignment at D-dudresnayi_contig1043:24219..28819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1043.468.1 ID=mRNA_D-dudresnayi_contig1043.468.1|Name=mRNA_D-dudresnayi_contig1043.468.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4601bp|location=Sequence derived from alignment at D-dudresnayi_contig1043:24219..28819+ (Desmarestia dudresnayi DdudBR16 monoicous)
AATGTACTGAGTGGCGTCCTTGCAGGTGTTGTATATTGTGCTCGTACTAC
TACTGTACTACTGTACTGTACTGTTGTCTGTTGTAGCTTAGCACACTCTT
TGCAGCGGTATAAGCTTGCTGCCATATGGACAGGCACCGTGCGGGCTGGT
GAGAGGGGGGAAAGTTTACCGTGACAGCGTGAGGTCTTCTGTCCTATCAC
AGGTGGATCTGGAGGCTGCAAGGATTGGATCGATCCTCGTCGCTTTGGAG
CCAAGGCAGTGCTTGGGAGAAGTGGTGGCATATCCGGACATTCTGCTAGA
AATTCGAGCCCCGCTATTTTGGGGATATACTTCATCGGAGTATATTATAT
AGGTAGAAGAACATGATCGTCTCGAGCTCTCCCCCGCTGCAAAGGGTGCA
CGAGATCCTGCAACGGATGCAGGTATGTGCAACACCGATAAGAAATGTTT
CCGTTTGTAGAGCTAACGAAGGGAGATACACTACGAGTGGTTCGTGTCTG
TATTTGGTGTATCATGCCTACTGACTACTACTGTTGTAGCTCTACGTGTA
AACCGCACTGTACACAAGACTACAAGTACAACTACTGTATACGAAGTATA
CAACTGCCGCTGTATGTCGTAGACTGGTTCTATAAGATTGTGTAAAACAC
ACAACACAGACACTCACCGAGACATGCATGTCCACATATCTGCAGCTCTA
GACCTTATAGTGGGATTGATGTTGATATTGAGTTTGGTACAAACATGTTT
GCTTTGTTCTTGGGATCGACCTGTTCCATGTTGTCGCCGAACAAGGCAGT
CTCCAGGACGTCCGCTTGTTGGTAAATAGCGCATACTGTACTGCTGACTA
ATACTACAAGTACTGATGTTGTATCATACATCCGAGTACGTACGTACATG
CTATGACCACGACAACAACATCACAACCCTGTGTCCGGTGTGCCTGGATG
TGACGCAACTGTACGGACCTCCGGAGGTCCGTTCATTTACGGACCTCTGC
GTTGCTAGTGTGTGGGGATCGAGGTTATAGTACGTAGTGTTACTCGTAGG
GTTTGATCTTTTCTTTTTTTTCGTTGTCGATAGTTCAGTGTACTAAGGTC
CGCGCATGGAACGGACCTCCAGAGGTCCGTATACCAGCCCCCGCCTGGAT
AAAGCTACTGGTTTTTATACGAACACCGCCGTATCTCGAGCCTGCTCGAG
CCTGCCCGAGCGGAGCTCCCAAAGCAACGATAACTACGATAGTACCGAGG
TGGATAGATATGCTGACCACTTGACCCTTGCGCCGCCCTGTTCGTTCTGG
GATTCAAGCGTATGTTGTTGTTGTTGTTGTTTACTTGGGCGATTGACAAA
AAGTGGTGCACGCCCTCACTTAAGAAACACAAAGGGGTGGTCTATGTTTA
TGCGTTAGTACCCCTTTTTGTCAAATTGCTCTCTTCCCAACGAACCCAAC
CACAAGCTGTCTGAATCCGCCGCCCCCGAACGCTTATTGCTTGTCTCTGT
CGTGACCGTCTTTGCCTGCCTACCTGGGTCATCTTCGCGGTCTGCCTCTC
TCGATTTCGCAAGCCCCATTCATTTTTGTGGTCTGCCTATCTCGGATTAT
TGGTTGTCGGTTGAGAAATTTGGGGTTTGTCTCTCTCGGAGGACAACCTT
GCGGTCTGCCTCCCGGTCGCGAATGAGATCTTTGTGGTCTTCGCCGCCTT
TTTGAAACTTTAGAGGTTAATGGTCTCACGCAGCGGGACTATTCGAAAAT
CGCTGCCTGTCAAAAAAGGGGCCTCACCGAACAAAAAGGGTTATTTAATG
AGCAAAACGGGGTATTACATAAAATGTTAACAGCGAAGTGGAATAACCAT
TCCTTTTGTTGGTAAAAAGGGATCAGTGCTCGTTTTTGCTCGCACCGTGC
TTTTCCGCGCTCTAGTTAACCCCATCTTCGTGCTCAAAACCAAAAAAAAA
GTTGTGCGTGCTCCGCGTGGTTCATGCGCGTGTGAATGAGGCATCAGATT
ATGTTTTGGGGTTGAATAGCGCCCGCAGTAGCACTTGCCCCGAAGCGAAA
CATCGACAGCCCCTTTTTCTTCCTAAATTGGGGGGGATGTACCCCTTTTG
TCTATGGGCATTTTTATTATACTTGTGGGTCGGTTGTGGCTGATTTCGAT
TTTATTTTGTCCATATGCGGCTGATCGTGCACGTCCGACTCACTAGGAAG
AGCCTTTGCCTATTTTTTCTGACGAAAATTGGCCGACATTTTTTGCCTCA
ATACAAAAACGTAGAATACATAGAATCAGCCGTAACGTTCCAAAGCTTAG
CGTATTGTTATTATGGAGTCTCCTCGTGGTTCTCATATATGTGTACGTAT
GTGAGTTGTGTTTTGCTTGGTTTCCTAAAAAGGCCAGGCTTTTTCCTCGT
CCCACTGGGCAGAAAATCTTCTCCTCAAAGTCGGGTTTTCTCTTATTTCC
GTCCTGGTTGTCGTAGGTTTTAGATACGAGGATGCTTAGCCTAACGTGTG
AGGTGTGCGAGTAGGGGGGGGTACGTTATTGTTGAAGAGCCATGTATATA
TTCGATTCTACTTCGGGATCTTTGAGATGTCTTTGTGTTCGCCCTCTTCG
ATATTTTCATGATATCTGCATACACTTATGACTCATCATGATGGGGTAGT
GTTATGGAGTCTCCTAGTGGTTCCTAATTGTATGTGGGTTTCGTATTGTC
TGGTATGTGTTCAACAGCTGTAGTCACGGGACCAACTCGTCCGTCTGAGG
AAACCCCCCCTTTTTAGTGTATCGCGTTAGATTTCTCAAAAGGGAAGAAG
ACAGCAATGAAGTGAAAAAGTTAATACAAGAAGCAGGTTGTGGGTGACAC
TAAGGCATACTTCCTGACAACCTACTACGGGTACGTTAAACCTGAATGTT
AACACGTTAGTAACAGTATCCGTCGCCCTTGTGTATGCAGTCTATTGTGA
TGGTATTGGAGTAGGCATTATTGATACGCTATACTATGGGGGGATCGGGG
ACTGATCCCTGCTAGACTCCTATACTTCTGGTGCTTCTTATACCTCGTAG
CTCAGTTCATCGTTTCCCGTCTGTCCTTGGGTCTTTGGTTCATCTGAAGG
AGCTTAACCAGCAACGCAAGCTAAACACGTGGTGAGATAATAATATAGGA
ATCAAATAACACACGTGCCTCACAGTAGTAGGCCTAGCGCCTGTACTGCC
TTCTAAAGTAATTCGCCTTCAATCACTTTACACTATAGCCCCGGGGCAGG
GTTGTGAACCGACTCGGAAAATGGCTCGATCGGTTTTTCAGTTTCTTGCC
GAAAATGTCAGTCGGTTTCGGTCGGTTTTTTCTTTTAGGCCGAAAAAAAC
GAAACCGAAACCGAACACTTCTCGGTCGGTTTCTCGGTCGGTTTCTCAGC
AAAACCAGCCGAGAGGTCCAGATTCGAAGGGTTCGGTGCTGTGCGTGGGT
CAGTACCATGTGTCGACATGATTTGTTCTTATCAAGCGGACACGCTTCTA
GCCTACAGCAGTAGCTACAATAATTGGTGGACTTGTGTTGGGTACTCAAA
AATCTCGGTTTCGGTTGGCAAAAAACGACAAAAAAAACGACCGAAAAACC
AACCAAACATTCTCGGTTCACAGCTGCTATGCCTTGCGGGCTGTCGGGTG
GGCGTGTCTATACATAATGGATTTTCCATACAGATGTGAGGGCTTTATCG
GCGTAGGGGGCAAGAAAAGAAAAAACGACCGACAAAAAACTCGAGTTGTT
TGTCGGTTTCGGTTGCTTTTTGGCAACCGAAAAACCGACTAAAAAATCTC
GGGTTCGGTCGGCAAAAACCGACAAAAAAAACAACCGAAAAACCAACCGA
AAATTCTCGGTTCATAACCCTGCCCCGGGGTACTATGTTGCACATGCACG
ATCGATTCCTTTATTCCGTTGATGCTCCCGGAATATAATTGATACCTACA
ATGTTGCAGCCAAAATAGATTTTTCTCGATACGGTACCTACCTACCTCTG
TGTAGCATTAGTATTGTGCCCCACGCCCGCCAACCCACCTGAGGTAAGCC
AAAGGTTTCTGCTTTAGTTGCACGCATTAGTTCCTGAATGACCTGCCGAT
ACGGCAACAGCGATTGGAGCACACAGACAGGCAGGTTCAGTACTAGCCTG
TGTGCCTGCCGTACCACTTCAAAGAGCGGACCTTGCATGTGCGTGAACCC
CCCCCCCCTCCCCCTTAATTTTTGTTGCTTTTTTACAACTTATACATCAA
TCAGCCGTGACGTTCCAACCTGCGGTTCCGGGGCCAGGGGGATAGTTTGT
GCGTAGTTATATTACAATTGTTAGTTGGTATTATGGTGCCGTGTGCCTTG
CACGCAGAATCAGTGTCTACTTTTGTATTTTGAGCTTCGACACCGCAATC
GTTGCACATATACGAAGTATATATATATATATATATATTATGTGTCCTTG
TTGCCCCCCTCCTCTTCTTGTGTGCCCGCCTGCCCTGTCACAAATAAAAA
AACAGACCGACACCGAGAACGTGGAGTGCCTCAAGACTTGCTGCGGAGCG
CTTGCGATACTGGCCAAGGACGAGGCAAACAAGCTGCTCATCGCGCGGGA
T
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1043:24219..28819+

>mRNA_D-dudresnayi_contig1043.468.1 ID=mRNA_D-dudresnayi_contig1043.468.1|Name=mRNA_D-dudresnayi_contig1043.468.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at D-dudresnayi_contig1043:24219..28819+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCGTCTCGAGCTCTCCCCCGCTGCAAAGGGTGCACGAGATCCTGCA
ACGGATGCAGATGATCGTCTCGAGCTCTCCCCCGCTGCAAAGGGTGCACG
AGATCCTGCAACGGATGCAGACCGACACCGAGAACGTGGAGTGCCTCAAG
ACTTGCTGCGGAGCGCTTGCGATACTGGCCAAGGACGAGGCAAACAAGCT
GCTCATCGCGCGGGATACCGACACCGAGAACGTGGAGTGCCTCAAGACTT
GCTGCGGAGCGCTTGCGATACTGGCCAAGGACGAGGCAAACAAGCTGCTC
ATCGCGCGGGAT
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