mRNA_D-dudresnayi_contig1043.467.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1043.467.1
Unique NamemRNA_D-dudresnayi_contig1043.467.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.920e-12
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    1 GDVDVTLQNVAFVPGVGFNLFSLHDV-PRCAGTINADG----IHMLNGRLSFTRGESGSYVRTT-RVDQTSIVAAAVLSPGKMQR----IDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRP 417
            G +D+ L+ VA VP + +NL SL  +  +  G + AD     + +  G   +       +V+T  R+D    +A A+++PG  +     +DIND   +  HSH   L+ TA+Q G+ + G+L  C GCS AKG    +P   + R+  P
Sbjct:  923 GTIDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRAPLP 1071          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.440e-11
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 GDVDVTLQNVAFVPGVGFNLFSLHDV-PRCAGTINADG----IHMLNGRLSFTRGESGSYVRTT-RVDQTSIVAAAVLSPGKMQR----IDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRP 417
            G  D+ L+ VA VP + +NL SL  +  +  G + AD     + +  G   +       +V+T  R+D    +A A+++PG  +     +DIND   +  HSH   L+ TA+Q G+ + G+L  C GCS AKG    +P   + R+  P
Sbjct:  533 GTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRAPLP 681          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.480e-11
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 GDVDVTLQNVAFVPGVGFNLFSLHDV-PRCAGTINADG----IHMLNGRLSFTRGESGSYVRTT-RVDQTSIVAAAVLSPGKMQR----IDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRP 417
            G  D+ L+ VA VP + +NL SL  +  +  G + AD     + +  G   +       +V+T  R+D    +A A+++PG  +     +DIND   +  HSH   L+ TA+Q G+ + G+L  C GCS AKG    +P   + R+  P
Sbjct:  913 GTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRAPLP 1061          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 7.620e-11
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 GDVDVTLQNVAFVPGVGFNLFSLHDV-PRCAGTINADG----IHMLNGRLSFTRGESGSYVRTT-RVDQTSIVAAAVLSPGKMQR----IDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRP 417
            G  D+ L+ VA VP + +NL SL  +  +  G + AD     + +  G   +       +V+T+ R D    +A A+++PG  +     +DIND   +  HSH   L+ TA+Q G+ + G+L  C GCS AKG    +P   + R+  P
Sbjct:  335 GTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTSHRKDSGRELACAMIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRAPLP 483          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-10
Identity = 46/149 (30.87%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 GDVDVTLQNVAFVPGVGFNLFSLHDV-PRCAGTINADG----IHMLNGRLSFTRGESGSYVRTT-RVDQTSIVAAAVLSPGKMQR----IDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRP 417
            G  D+ L+ VA VP + +NL SL  +  +  G + AD     + +  G   +       +V+T  R++    +A A+++PG  +     +DIND   +  HSH   L+ TA+Q G+ + G+L  C GCS AKG    +P   + R+  P
Sbjct: 1011 GTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINSGRELACAIIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRAPLP 1159          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.560e-10
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   73 DVPRCAGTINADGIHMLNGRLSFTRGESGSYVRTTRVDQTSIVA--AAVLSPGKMQ-RIDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVP 387
            D P  A T+  D + +L+G LS    E  +    +     +I+A  A+  S GK    IDIN    S  H +   +RETA+Q G+++ GEL PCAGC EAKGRR  VP
Sbjct:  293 DPPHLAFTVQHDDLEVLSGFLSECN-EQQAAAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQGVRLVGELQPCAGCVEAKGRRALVP 399          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5KKW9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.880e-10
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   73 DVPRCAGTINADGIHMLNGRLS-FTRGESGSYVRTTRVDQTSIVAAAVLSPGKMQ-RIDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVP 387
            D P  A T+  D + +L+G LS     ++ +    +    T    A+  S GK    IDIN    S  H +   +RETA+Q G+++ GEL PC GC EAKGRR  VP
Sbjct:   35 DPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHALATIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQGVRLVGELQPCVGCVEAKGRRAPVP 141          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.460e-10
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   73 DVPRCAGTINADGIHMLNGRLSFTRGESGSYVRTTRVDQTSIVA--AAVLSPGKMQ-RIDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVP 387
            D P  A T+  D + +L+G LS    E  +    +     +I+A  A+  S GK    IDIN    S  H +   +RETA+Q G+++ GEL PC GC EAKGRR  VP
Sbjct:  964 DPPHLAFTVQHDDLEVLSGFLSECN-EQQAAAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQGVRLVGELQPCVGCVEAKGRRAPVP 1070          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.460e-9
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   79 PRCAGTINADGIHMLNGRLSFTRGESGSYVRTTRVDQTSIVA--AAVLSPGKMQ-RIDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVP 387
            P  A T+  D + +L G LS    E  +    +     +I+A  A+  S GK    IDIN    S  H +   +RETA+Q G+++ GEL PC GC EAKGRR  VP
Sbjct:  591 PPLAFTVQHDDLEVLRGFLSECN-EQQAVAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQGVRLVGELQPCVGCVEAKGRRAPVP 695          
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.820e-8
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 1
Query:  202 AAAVLSPG--------KMQRIDINDLLVSLAHSHSATLRETARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRPLQRLFV 435
            A A+++PG            IDIN    S  H +  ++RETA+Q G+++ GEL PC GC EAKGRR  VP     R+  P  ++ +
Sbjct:   29 ALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFSMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHI 114          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1043.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LGF7_9PHAE9.920e-1231.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE2.440e-1131.54CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE2.480e-1131.54CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPC5_9PHAE7.620e-1131.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JNN1_9PHAE1.180e-1030.87CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JU31_9PHAE1.560e-1040.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW9_9PHAE1.880e-1038.32Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K3I1_9PHAE5.460e-1039.81Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JCK7_9PHAE3.460e-939.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KIN4_9PHAE2.820e-838.37Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1043contigD-dudresnayi_contig1043:7338..7772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.7961721-CDS-D-dudresnayi_contig1043:7337..77721622927542.7961721-CDS-D-dudresnayi_contig1043:7337..7772Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 7338..7772 +
1690556800.285607-CDS-D-dudresnayi_contig1043:7337..77721690556800.285607-CDS-D-dudresnayi_contig1043:7337..7772Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1043 7338..7772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1043.467.1prot_D-dudresnayi_contig1043.467.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1043 7338..7772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1043.467.1

>prot_D-dudresnayi_contig1043.467.1 ID=prot_D-dudresnayi_contig1043.467.1|Name=mRNA_D-dudresnayi_contig1043.467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=145bp
GDVDVTLQNVAFVPGVGFNLFSLHDVPRCAGTINADGIHMLNGRLSFTRG
ESGSYVRTTRVDQTSIVAAAVLSPGKMQRIDINDLLVSLAHSHSATLRET
ARQMGIKVFGELVPCAGCSEAKGRRMAVPWSITCRSTRPLQRLFV
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mRNA from alignment at D-dudresnayi_contig1043:7338..7772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1043.467.1 ID=mRNA_D-dudresnayi_contig1043.467.1|Name=mRNA_D-dudresnayi_contig1043.467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at D-dudresnayi_contig1043:7338..7772+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGATGTGGATGTGACCCTACAGAACGTGGCGTTTGTACCCGGAGTTGG ATTTAACCTTTTTTCCTTGCATGACGTGCCGAGATGCGCCGGGACGATAA ACGCTGACGGGATTCACATGCTGAATGGACGTTTGTCTTTTACAAGGGGG GAGTCGGGCTCATACGTAAGGACCACCAGAGTCGATCAGACTTCGATTGT TGCAGCAGCAGTGCTGTCCCCCGGGAAAATGCAGCGGATAGATATCAACG ATCTACTTGTTTCACTTGCCCACTCCCACTCTGCAACGTTGCGTGAGACT GCTCGACAAATGGGGATAAAGGTGTTTGGGGAATTGGTGCCTTGTGCTGG ATGTTCTGAGGCCAAGGGTAGGAGGATGGCTGTTCCGTGGTCGATTACCT GCCGCTCGACCAGGCCCCTGCAACGTCTGTTCGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1043:7338..7772+

>mRNA_D-dudresnayi_contig1043.467.1 ID=mRNA_D-dudresnayi_contig1043.467.1|Name=mRNA_D-dudresnayi_contig1043.467.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at D-dudresnayi_contig1043:7338..7772+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGATGTGGATGTGACCCTACAGAACGTGGCGTTTGTACCCGGAGTTGG
ATTTAACCTTTTTTCCTTGCATGACGTGCCGAGATGCGCCGGGACGATAA
ACGCTGACGGGATTCACATGCTGAATGGACGTTTGTCTTTTACAAGGGGG
GAGTCGGGCTCATACGTAAGGACCACCAGAGTCGATCAGACTTCGATTGT
TGCAGCAGCAGTGCTGTCCCCCGGGAAAATGCAGCGGATAGATATCAACG
ATCTACTTGTTTCACTTGCCCACTCCCACTCTGCAACGTTGCGTGAGACT
GCTCGACAAATGGGGATAAAGGTGTTTGGGGAATTGGTGCCTTGTGCTGG
ATGTTCTGAGGCCAAGGGTAGGAGGATGGCTGTTCCGTGGTCGATTACCT
GCCGCTCGACCAGGCCCCTGCAACGTCTGTTCGTGGGGGATGTGGATGTG
ACCCTACAGAACGTGGCGTTTGTACCCGGAGTTGGATTTAACCTTTTTTC
CTTGCATGACGTGCCGAGATGCGCCGGGACGATAAACGCTGACGGGATTC
ACATGCTGAATGGACGTTTGTCTTTTACAAGGGGGGAGTCGGGCTCATAC
GTAAGGACCACCAGAGTCGATCAGACTTCGATTGTTGCAGCAGCAGTGCT
GTCCCCCGGGAAAATGCAGCGGATAGATATCAACGATCTACTTGTTTCAC
TTGCCCACTCCCACTCTGCAACGTTGCGTGAGACTGCTCGACAAATGGGG
ATAAAGGTGTTTGGGGAATTGGTGCCTTGTGCTGGATGTTCTGAGGCCAA
GGGTAGGAGGATGGCTGTTCCGTGGTCGATTACCTGCCGCTCGACCAGGC
CCCTGCAACGTCTGTTCGTG
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