mRNA_D-dudresnayi_contig10419.454.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10419.454.1
Unique NamemRNA_D-dudresnayi_contig10419.454.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: D7FQ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ43_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.720e-15
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 VFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQ 153
            +FV DDKF DVI AL++RGW RS + +SPNF LKWRNLSNINFRLLR  Q
Sbjct:   32 IFVTDDKFSDVIRALQRRGWTRSGNANSPNFDLKWRNLSNINFRLLRKHQ 81
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A8K1CQH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQH6_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-10
Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:    1 KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKALLAGHL 216
            KVFV DDKF DVIAAL  RGW R  HL  P F LKW N S I ++ + + Q VNH  N    S K  LA  L
Sbjct:    6 KVFVTDDKFPDVIAALAARGWRRYPHLSFPKFDLKWSNYSKIAWKRVASHQIVNHFQNVTLFSQKDELAARL 77
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A2D4C137_PYTIN (Tubulin-tyrosine ligase family, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C137_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 9.660e-10
Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    4 VFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKALLAGHL 216
            +FVADDKF DVI  L +RGW R  HL  P F LKW N S I +R +   Q VNH  ++  LS K  LA  L
Sbjct:    9 LFVADDKFSDVIEELTRRGWRRFPHLSFPKFDLKWSNYSKIAWRRVAPTQLVNHLEHATLLSRKDALAQRL 79
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A8J2X0Y3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0Y3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.910e-8
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKALLAGHLA 219
            + FVADDKF DVIA LE RGW R          L WRNL   +F     D++VNH  ++Q+LS+KA LA  LA
Sbjct:   11 QTFVADDKFGDVIACLEARGWARV----ICGGDLAWRNLKQTDFESADADRYVNHLRHAQRLSHKATLAAALA 79
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A0W8CFH8_PHYNI (Tubulin glycylase 3A n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CFH8_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 9.800e-8
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNK 195
            ++F ADDKF DV+A LE RGW R   +  P F LKW N S + +  + + Q VNH  NS  LS K
Sbjct:    3 QLFAADDKFPDVVAQLETRGWRRLPFVGCPKFDLKWTNYSKVAWGRVTSQQIVNHLQNSIILSQK 67
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A3R7K2Z0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K2Z0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-7
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    4 VFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKAL 201
            +F ADDKF DV+ ALE RGW R  ++  P F LKW N S + +  + + QFVNH  +S   S K L
Sbjct:    4 LFAADDKFGDVVEALEARGWRRLPYVGIPKFDLKWTNYSKVAWSRVTSKQFVNHFQHSILFSRKDL 69
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A329SZ53_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SZ53_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.430e-7
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNK 195
            ++F ADDKF DV+A LE RGW R   +  P F LKW N   I++  + + Q VNH  +S  LS K
Sbjct:    3 QLFAADDKFPDVVAELEARGWRRLPFVGCPKFDLKWTNYGKISWGRVTSQQIVNHLQHSIILSQK 67
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A2P4YKN5_9STRA (Tubulin-tyrosine ligase family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKN5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.130e-7
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    4 VFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNK 195
            +F  DDKF DV+A LE+RGW R   +  P F LKW N + I +  ++  Q VNH  +S   S K
Sbjct:    4 LFATDDKFADVVAELERRGWRRLPFVGCPKFDLKWTNYTKIAWTRVKPQQIVNHLHHSILFSQK 67
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A662XJ94_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJ94_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.960e-6
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    4 VFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKALLAGHLAFQH 228
            +F ADDKF DVIA LE RGW R  ++  P   LKW N S +++  +   Q VNH  ++   S K   A  L + H
Sbjct:    4 LFAADDKFADVIAVLEARGWRRLPYVGCPKAHLKWTNYSKLSWPRVAPTQLVNHFQHAVLFSRKDQFA-ELLYAH 77
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BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Match: A0A1V9ZX07_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX07_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.320e-5
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTDQFVNHAFNSQQLSNKALLAGHLA 219
            K + AD+KF DVIA+LE +GW   RH   P   L++ N S I ++ ++    VNH  N+  LS K  L  +++
Sbjct:    5 KGYYADEKFADVIASLEAKGWSSCRHWTFPTCCLRYVNYSKIQWKYIKPYHIVNHLENAVLLSQKHKLLEYMS 77
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10419.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FQ43_ECTSI5.720e-1572.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CQH6_PYTOL1.150e-1052.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C137_PYTIN9.660e-1050.70Tubulin-tyrosine ligase family, putative n=1 Tax=P... [more]
A0A8J2X0Y3_9STRA2.910e-849.32Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0W8CFH8_PHYNI9.800e-847.69Tubulin glycylase 3A n=7 Tax=Phytophthora TaxID=47... [more]
A0A3R7K2Z0_9STRA1.340e-746.97Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329SZ53_9STRA4.430e-746.15Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4YKN5_9STRA5.130e-743.75Tubulin-tyrosine ligase family n=1 Tax=Phytophthor... [more]
A0A662XJ94_9STRA4.960e-641.33Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1V9ZX07_9STRA4.320e-538.36Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10419contigD-dudresnayi_contig10419:6863..8209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue6.3e-08
Seed eggNOG ortholog115417.EPrPW00000014144
KEGG koko:K16608
EggNOG free text desc.Tubulin-tyrosine ligase family
EggNOG OGs1MFBC@121069,KOG2157@1,KOG2157@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.498631-CDS-D-dudresnayi_contig10419:6864..72241622927541.498631-CDS-D-dudresnayi_contig10419:6864..7224Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 6865..7224 -
1690556799.8115137-CDS-D-dudresnayi_contig10419:6864..72241690556799.8115137-CDS-D-dudresnayi_contig10419:6864..7224Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 6865..7224 -
1622927541.5112574-CDS-D-dudresnayi_contig10419:8056..82091622927541.5112574-CDS-D-dudresnayi_contig10419:8056..8209Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 8057..8209 -
1690556799.8218994-CDS-D-dudresnayi_contig10419:8056..82091690556799.8218994-CDS-D-dudresnayi_contig10419:8056..8209Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 8057..8209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10419.454.1prot_D-dudresnayi_contig10419.454.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10419 6865..8209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10419.454.1

>prot_D-dudresnayi_contig10419.454.1 ID=prot_D-dudresnayi_contig10419.454.1|Name=mRNA_D-dudresnayi_contig10419.454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=171bp
KVFVADDKFVDVIAALEKRGWIRSRHLDSPNFQLKWRNLSNINFRLLRTD
QFVNHAFNSQQLSNKALLAGHLAFQHHYHHHHHKPAFFPEGSDKNVHGDI
VAVATPDAAFRRDSSSGTTSCQHLEDNNGVRSSSSSQQGRNPPAEANYSA
FFAVDPDVFFPRCCDVSEGGG
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mRNA from alignment at D-dudresnayi_contig10419:6863..8209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10419.454.1 ID=mRNA_D-dudresnayi_contig10419.454.1|Name=mRNA_D-dudresnayi_contig10419.454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1347bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:6863..8209- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGTGTTTGTTGCAGACGACAAGTTTGTAGACGTCATTGCCGCTCTGGA
GAAGCGAGGCTGGATTCGATCCCGCCACTTGGACAGTCCCAACTTTCAGC
TCAAGTGGCGCAACCTCAGCAACATCAACTTTCGCCTTCTTCGAACAGAC
CAGGTACAGTAGTAACAGTATGTCTACTGTCTACACAGGGGAATATACTG
TTGCAGGTACGACGGTACCTGTACTAAACAACCGTGGTATCATAATAGTA
GCACTACTACGATCATAACTATTACTACTACTACTGTTGTACGAGTACTG
CTGAGTATTGGGGTAGCATGTTGTCTGGAGCTCTACAACAACTTATTATG
CATAGTATTGGGTCTACGAGTACACCTGACATGCCAGAGCTAGGCAAAAG
TTTTCCATGCAACGTGACTCGTCAGAGTTCTATAATACAACAATGCAACA
TCAGCAGGTGTACTTTGGTACGCAGACAGACGTGGGTTGGAATTGTTCTC
AGCAGACAGACGCGATCAACGGACACGTGTCTTTTTTCATCGTAGACCAT
TATACCAGGTACAACAGTAGTAGTAGTAGAGCGATGGGCAAAGGGATGGC
AGGCGTGTGGAGGGCGTGTGGCGTATGCTGGAACGAACGTTGCGTGCCGT
GAAACGTGTCGTCGCTGCAGTTTAGCTCGTATCGTATAGTAGAGGTAGAG
CTCTATGATAGGTAGACTACAACAATAGCAACAGTAGTATTGTAGTATCG
ATAGGTAGTCTTCGTTCAGTAGTTGTTGTTGTTGTTGTTTCTCACATTAG
CTCATCTCAAAAGTAGTAAGATACGTTACATACGAGAGAAGGTGGTACAA
CAGTAGTATATATTACCAGGTAGTCCTTTCTATGTGGGTTGAATCCACTA
GCTAGCCCAACAACCACACCACCTACCAACCCACGCATCCACCCATACCC
TACGCGTCTACTACTACTGTTCACTTCCGTCGCAGTTCGTCAATCACGCC
TTCAACTCTCAGCAACTCAGCAACAAGGCCCTCCTTGCCGGCCACCTAGC
CTTCCAACACCATTACCACCACCACCACCACAAACCGGCCTTCTTCCCTG
AAGGCAGTGATAAAAATGTCCATGGGGATATTGTAGCTGTAGCGACTCCA
GATGCGGCCTTTAGGAGAGATTCTTCTAGCGGCACAACCAGCTGTCAACA
CCTTGAGGATAATAATGGTGTCCGCAGCAGCAGCAGCAGTCAACAGGGGA
GAAATCCGCCGGCAGAGGCGAATTATTCCGCGTTCTTCGCAGTCGATCCG
GACGTGTTTTTCCCGAGGTGCTGCGATGTTAGCGAAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10419:6863..8209-

>mRNA_D-dudresnayi_contig10419.454.1 ID=mRNA_D-dudresnayi_contig10419.454.1|Name=mRNA_D-dudresnayi_contig10419.454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:6863..8209- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGTGTTTGTTGCAGACGACAAGTTTGTAGACGTCATTGCCGCTCTGGA
GAAGCGAGGCTGGATTCGATCCCGCCACTTGGACAGTCCCAACTTTCAGC
TCAAGTGGCGCAACCTCAGCAACATCAACTTTCGCCTTCTTCGAACAGAC
CAGAAGGTGTTTGTTGCAGACGACAAGTTTGTAGACGTCATTGCCGCTCT
GGAGAAGCGAGGCTGGATTCGATCCCGCCACTTGGACAGTCCCAACTTTC
AGCTCAAGTGGCGCAACCTCAGCAACATCAACTTTCGCCTTCTTCGAACA
GACCAGTTCGTCAATCACGCCTTCAACTCTCAGCAACTCAGCAACAAGGC
CCTCCTTGCCGGCCACCTAGCCTTCCAACACCATTACCACCACCACCACC
ACAAACCGGCCTTCTTCCCTGAAGGCAGTGATAAAAATGTCCATGGGGAT
ATTGTAGCTGTAGCGACTCCAGATGCGGCCTTTAGGAGAGATTCTTCTAG
CGGCACAACCAGCTGTCAACACCTTGAGGATAATAATGGTGTCCGCAGCA
GCAGCAGCAGTCAACAGGGGAGAAATCCGCCGGCAGAGGCGAATTATTCC
GCGTTCTTCGCAGTCGATCCGGACGTGTTTTTCCCGAGGTGCTGCGATGT
TAGCGAAGGAGGAGGATTCGTCAATCACGCCTTCAACTCTCAGCAACTCA
GCAACAAGGCCCTCCTTGCCGGCCACCTAGCCTTCCAACACCATTACCAC
CACCACCACCACAAACCGGCCTTCTTCCCTGAAGGCAGTGATAAAAATGT
CCATGGGGATATTGTAGCTGTAGCGACTCCAGATGCGGCCTTTAGGAGAG
ATTCTTCTAGCGGCACAACCAGCTGTCAACACCTTGAGGATAATAATGGT
GTCCGCAGCAGCAGCAGCAGTCAACAGGGGAGAAATCCGCCGGCAGAGGC
GAATTATTCCGCGTTCTTCGCAGTCGATCCGGACGTGTTTTTCCCGAGGT
GCTGCGATGTTAGCGAAGGAGGAGGA
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