mRNA_D-dudresnayi_contig10415.449.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10415.449.1
Unique NamemRNA_D-dudresnayi_contig10415.449.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A1Z5JZ46_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ46_FISSO)

HSP 1 Score: 64.3 bits (155), Expect = 4.540e-10
Identity = 29/89 (32.58%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARDSLEMSHT--QLPRGVLVVDLDTGEIRIPTALA 261
            ++++ +  S++L     I + ++PL+WCH++ P  P  LA +L++ PAP+I+GIA +   M      LP  + +VDLD G + +  +L+
Sbjct: 1193 IVLSSSRRSILLSAATVIVELLKPLQWCHLFVPRVPTSLASDLLQYPAPFIIGIASEDPGMLDLIRDLPDDITLVDLDVGRVILAASLS 1281          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S2YHD9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHD9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.310e-9
Identity = 33/90 (36.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGI-ARDS--LEMSHTQLPRGVLVVDLDTGEIRIPTALA 261
            ++IT +  SV+L     + + ++PL+WCH+  P  P +LA +L++ PAP+ILG+ A+D   LE+   +LP  V +VDLD G + + ++ +
Sbjct:    5 IVITGSRRSVLLSATTALAEMLKPLKWCHLMVPRVPSNLAGDLLQYPAPFILGMPAQDPGILELIR-ELPEDVTLVDLDVGRVILASSFS 93          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S3Q4Y3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q4Y3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.500e-9
Identity = 29/83 (34.94%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARD---SLEMSHTQLPRGVLVVDLDTGEI 240
            ++ T +  SV++ +   +R  ++PL W H+  P+AP  LA +L++ PAP+I+G+A D   S+++  T LP  + +VD+D G +
Sbjct: 1070 IVFTSSRRSVLVSMVAGLRSLLRPLGWSHLIVPLAPPALAQDLVQYPAPFIIGVALDNKGSMDLLKT-LPMDITLVDVDVGRV 1151          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A1Z5K8R6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8R6_FISSO)

HSP 1 Score: 60.8 bits (146), Expect = 7.530e-9
Identity = 28/89 (31.46%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARDSLEMSHT--QLPRGVLVVDLDTGEIRIPTALA 261
            ++ + +  S++L     I + ++PL+WCH++ P  P  LA +L++ PAP+I+GI  +   M      LP  + +VDLD G + +  +L+
Sbjct: 1192 IVFSSSRRSILLSAATAIVELLKPLQWCHLFVPRVPTALASDLLQYPAPFIIGIPSEDPGMLDLIRDLPDDITLVDLDVGRVILAASLS 1280          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S1ZL75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZL75_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.920e-8
Identity = 30/90 (33.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIA---RDSLEMSHTQLPRGVLVVDLDTGEIRIPTALA 261
            +I++ +  S++L     I + ++PL W H++ P+ P  L+ +L++ PAP+ILGI    R S+++ ++ LP  V +VDLD G + +  + A
Sbjct: 1140 IILSSSRRSILLSAATAIIEMLKPLEWAHLFVPLVPAALSEDLVQYPAPFILGIPSEDRGSIDLLNS-LPPDVTLVDLDVGRVILAKSFA 1228          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S4RBI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBI6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.590e-8
Identity = 29/83 (34.94%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIA---RDSLEMSHTQLPRGVLVVDLDTGEI 240
            +I++ +  S++L     I + ++PL W H++ P+ P  L+ +L++ PAP+ILGI    R S+++ ++ LP  V +VDLD G +
Sbjct: 1463 IILSSSRRSILLSAATAIIEMLKPLEWAHLFVPLVPAALSEDLVQYPAPFILGIPSEDRGSIDLLNS-LPPDVTLVDLDVGRV 1544          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S1GNW9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNW9_CYCTE)

HSP 1 Score: 58.2 bits (139), Expect = 4.460e-8
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   52 IRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARDSLEMSHT--QLPRGVLVVDLDTGEIRIPTALA 261
            ++Q I+PL+W H+  P+ P+ LA +L+E PAP++LG++   L        LP  V +VDLD G + +   +A
Sbjct:   12 VKQLIEPLKWEHLAVPLVPEALATDLLEYPAPFLLGVSSQDLGSLGLLDSLPEDVTLVDLDIGRVILAPVVA 83          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S2LI85_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LI85_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.550e-8
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   22 HSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARDSLEMSH--TQLPRGVLVVDLDTGEIRIPTAL 258
             S++L   + I   + PL W H+  PV P ++  +L++ PAPYI+GI+ DS   +    +LP  V +VDLD G + + + L
Sbjct:  524 RSMLLACVQSIVTFLCPLEWTHLIVPVVPDEMVADLLQYPAPYIIGISSDSSNGNSWIDELPDDVTLVDLDIGRVILASVL 604          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S1Y3J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3J6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.900e-7
Identity = 27/81 (33.33%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 IITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGI-ARDSLEMSH-TQLPRGVLVVDLDTGEI 240
            + + +  S+++     + Q + P+ W H+  P+ P  LA +L++ PAP+I+GI + DS  +   + LPR V +VDLD G +
Sbjct:   35 VFSSSQRSLLMSAVNGMLQLLDPVGWAHLVVPLVPSALAKDLLQYPAPFIVGIPSEDSGNIQLLSNLPRDVTLVDLDVGRV 115          
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Match: A0A7S0ULG9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULG9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.230e-7
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 LIITKASHSVMLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIAR---DSLEMSHTQLPRGVLVVDLDTGEI 240
            +I +    SV+      +   ++PL+W H+  P+ P  LA +L++ PAP+ILG+     DS+++    LPR V +VDLD G +
Sbjct:  396 IIFSSGRRSVLHAASVGLAALLRPLKWSHLLVPMVPGALASDLIQYPAPFILGVPSEDADSMDLLGN-LPRDVTLVDLDVGRV 477          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10415.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A1Z5JZ46_FISSO4.540e-1032.58Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2YHD9_9STRA1.310e-936.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3Q4Y3_9STRA5.500e-934.94Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K8R6_FISSO7.530e-931.46Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1ZL75_9STRA1.920e-833.33Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4RBI6_9STRA3.590e-834.94Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1GNW9_CYCTE4.460e-837.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2LI85_9STRA6.550e-835.80Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1Y3J6_9STRA1.900e-733.33Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0ULG9_9STRA4.230e-734.94Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10415contigD-dudresnayi_contig10415:9675..9935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D8LH28
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.0882156-UTR-D-dudresnayi_contig10415:9674..97041622927541.0882156-UTR-D-dudresnayi_contig10415:9674..9704Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10415 9675..9704 +
1690556799.6107783-UTR-D-dudresnayi_contig10415:9674..97041690556799.6107783-UTR-D-dudresnayi_contig10415:9674..9704Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10415 9675..9704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.1037965-CDS-D-dudresnayi_contig10415:9704..99351622927541.1037965-CDS-D-dudresnayi_contig10415:9704..9935Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 9705..9935 +
1690556799.6217194-CDS-D-dudresnayi_contig10415:9704..99351690556799.6217194-CDS-D-dudresnayi_contig10415:9704..9935Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 9705..9935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10415.449.1prot_D-dudresnayi_contig10415.449.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10415 9705..9935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10415.449.1

>prot_D-dudresnayi_contig10415.449.1 ID=prot_D-dudresnayi_contig10415.449.1|Name=mRNA_D-dudresnayi_contig10415.449.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=77bp
MLLLGEWIRQAIQPLRWCHIYSPVAPQDLALELMECPAPYILGIARDSLE
MSHTQLPRGVLVVDLDTGEIRIPTALA
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mRNA from alignment at D-dudresnayi_contig10415:9675..9935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10415.449.1 ID=mRNA_D-dudresnayi_contig10415.449.1|Name=mRNA_D-dudresnayi_contig10415.449.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:9675..9935+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTAATAATAACAAAAGCGAGCCACTCAGTCATGCTGCTGCTTGGGGAGTG GATACGGCAGGCCATCCAACCTCTGCGCTGGTGCCATATCTACAGCCCAG TGGCTCCCCAGGATCTCGCCCTCGAGCTTATGGAGTGCCCCGCACCGTAC ATTTTGGGAATTGCCAGAGACAGCCTGGAGATGTCGCACACACAACTGCC AAGGGGTGTGCTAGTGGTAGATCTAGACACCGGAGAAATACGCATTCCTA CAGCGCTTGCA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10415:9675..9935+

>mRNA_D-dudresnayi_contig10415.449.1 ID=mRNA_D-dudresnayi_contig10415.449.1|Name=mRNA_D-dudresnayi_contig10415.449.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:9675..9935+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTGCTGCTTGGGGAGTGGATACGGCAGGCCATCCAACCTCTGCGCTG
GTGCCATATCTACAGCCCAGTGGCTCCCCAGGATCTCGCCCTCGAGCTTA
TGGAGTGCCCCGCACCGTACATTTTGGGAATTGCCAGAGACAGCCTGGAG
ATGTCGCACACACAACTGCCAAGGGGTGTGCTAGTGGTAGATCTAGACAC
CGGAGAAATACGCATTCCTACAGCGCTTGCAATGCTGCTGCTTGGGGAGT
GGATACGGCAGGCCATCCAACCTCTGCGCTGGTGCCATATCTACAGCCCA
GTGGCTCCCCAGGATCTCGCCCTCGAGCTTATGGAGTGCCCCGCACCGTA
CATTTTGGGAATTGCCAGAGACAGCCTGGAGATGTCGCACACACAACTGC
CAAGGGGTGTGCTAGTGGTAGATCTAGACACCGGAGAAATACGCATTCCT
ACAGCGCTTGCA
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