mRNA_D-dudresnayi_contig10415.448.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10415.448.1
Unique NamemRNA_D-dudresnayi_contig10415.448.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10415.448.1 vs. uniprot
Match: A0A7S3GN39_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN39_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.140e-33
Identity = 83/187 (44.39%), Postives = 101/187 (54.01%), Query Frame = 1 
Query:  265 DAAVGGCVLSAAELPSSKEYLQREDGEWTIAHMLPVADGVILGQDVGVRVIWDTQQQAQQLGRD---------------AALDMIFHAGARLWKEDLGVIPPVEGADTSTMNLVYKREFKAKESGVAVSADGTTRTVRPGTGWPKVQILERSASSAGSTTADTWHVLETLTPLLSTATGKNASEGAE 780
            DAA G C+LSAAEL SSK+YLQ  DG W IA++LPVADGV+ G+ V VRV WD  Q   Q   D               A    +F    R+WKED G IPP            Y+++FK K S   V  D   RTV    GWP+VQIL+RSA  A       W VL+TLTPLL+ A  ++  +G E
Sbjct:  414 DAAQGACILSAAELESSKQYLQMNDGAWKIAYLLPVADGVLEGRAVAVRVQWDQAQADAQAALDKAHRGSADGGKQQAPAGAAAVFEVDTRIWKEDAGPIPPRTVDQQHWAKTYYQQDFKWKAS---VKVDDGARTVTAAVGWPRVQILQRSAKGAD------WQVLKTLTPLLTVAATEDQFDGKE 591
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10415.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3GN39_9STRA1.140e-3344.39Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10415contigD-dudresnayi_contig10415:5039..6032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size788
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10415.448.1prot_D-dudresnayi_contig10415.448.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10415 5039..6026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.8291976-CDS-D-dudresnayi_contig10415:5038..51011622927540.8291976-CDS-D-dudresnayi_contig10415:5038..5101Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5039..5101 -
1690556799.5268347-CDS-D-dudresnayi_contig10415:5038..51011690556799.5268347-CDS-D-dudresnayi_contig10415:5038..5101Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5039..5101 -
1622927540.8800943-CDS-D-dudresnayi_contig10415:5158..55181622927540.8800943-CDS-D-dudresnayi_contig10415:5158..5518Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5159..5518 -
1690556799.533992-CDS-D-dudresnayi_contig10415:5158..55181690556799.533992-CDS-D-dudresnayi_contig10415:5158..5518Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5159..5518 -
1622927540.897164-CDS-D-dudresnayi_contig10415:5597..58311622927540.897164-CDS-D-dudresnayi_contig10415:5597..5831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5598..5831 -
1690556799.541106-CDS-D-dudresnayi_contig10415:5597..58311690556799.541106-CDS-D-dudresnayi_contig10415:5597..5831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5598..5831 -
1622927540.9091566-CDS-D-dudresnayi_contig10415:5903..60261622927540.9091566-CDS-D-dudresnayi_contig10415:5903..6026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5904..6026 -
1690556799.5483513-CDS-D-dudresnayi_contig10415:5903..60261690556799.5483513-CDS-D-dudresnayi_contig10415:5903..6026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 5904..6026 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.9250686-UTR-D-dudresnayi_contig10415:6026..60321622927540.9250686-UTR-D-dudresnayi_contig10415:6026..6032Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10415 6027..6032 -
1690556799.5556328-UTR-D-dudresnayi_contig10415:6026..60321690556799.5556328-UTR-D-dudresnayi_contig10415:6026..6032Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10415 6027..6032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10415.448.1

>prot_D-dudresnayi_contig10415.448.1 ID=prot_D-dudresnayi_contig10415.448.1|Name=mRNA_D-dudresnayi_contig10415.448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=260bp
MAAAGGKLEPIRDGETRRASVARQLGSVLHSLVSGATNLDTNAIKAAILE
GGGAGVSSMTDLWVDIAASAELVPIADIPVICAAAGDAAVGGCVLSAAEL
PSSKEYLQREDGEWTIAHMLPVADGVILGQDVGVRVIWDTQQQAQQLGRD
AALDMIFHAGARLWKEDLGVIPPVEGADTSTMNLVYKREFKAKESGVAVS
ADGTTRTVRPGTGWPKVQILERSASSAGSTTADTWHVLETLTPLLSTATG
KNASEGAEAP
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mRNA from alignment at D-dudresnayi_contig10415:5039..6032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10415.448.1 ID=mRNA_D-dudresnayi_contig10415.448.1|Name=mRNA_D-dudresnayi_contig10415.448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:5039..6032- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAACAATGGCTGCGGCCGGTGGTAAGTTGGAGCCAATTAGAGACGGAGA
AACTCGCAGAGCGAGTGTGGCAAGACAGCTCGGGTCTGTTTTGCATTCTC
TTGTGAGCGGGGCGACTAACCTGGATACGGTATGTATGAGCTGATTGCTG
ATGTATTTTCACCATTGTATTTCATATATTTGTATTTACATATTGCATCA
GAACGCAATAAAGGCGGCAATTCTAGAAGGTGGTGGAGCGGGAGTTTCTA
GTATGACCGATCTCTGGGTCGACATCGCAGCTTCCGCCGAACTGGTCCCC
ATTGCAGACATCCCTGTCATATGCGCAGCGGCAGGCGATGCTGCAGTTGG
CGGGTGTGTGTTGAGTGCCGCGGAATTGCCGTCAAGCAAGGAGTATTTAC
AACGCGAGGACGGAGAGTGGACTATCGCCCATATGGTAAGTATGAGCTTG
CTTTGTTAATTGATTTATTTAGTTATCTGCTGACTCGGGGACTTTTGAAC
TGCAATAATTGAAGTTACCTGTTGCAGACGGAGTGATTCTCGGTCAGGAT
GTTGGCGTGCGCGTGATTTGGGACACGCAGCAGCAAGCTCAACAGCTGGG
TCGTGATGCTGCTTTAGACATGATTTTTCATGCTGGTGCGCGGCTGTGGA
AAGAGGACCTCGGTGTCATCCCCCCGGTCGAGGGTGCTGATACCTCCACA
ATGAACCTTGTATACAAGAGAGAGTTTAAGGCTAAAGAGAGTGGCGTTGC
TGTATCAGCAGATGGCACCACTAGGACGGTGCGGCCAGGGACCGGCTGGC
CCAAAGTGCAGATCTTGGAGCGGTCCGCATCCAGTGCGGGGTCGACCACC
GCAGACACTTGGCACGTGCTCGAGGTATCTTTCATTGCTGGTATCTTCTC
TGGTTCCGCTAAATGTGTTATCTGTGCATAGACATTGACCCCGCTGCTCA
GCACTGCAACTGGCAAGAACGCTTCTGAGGGTGCTGAAGCGCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10415:5039..6032-

>mRNA_D-dudresnayi_contig10415.448.1 ID=mRNA_D-dudresnayi_contig10415.448.1|Name=mRNA_D-dudresnayi_contig10415.448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:5039..6032- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCTGCGGCCGGTGGTAAGTTGGAGCCAATTAGAGACGGAGAAACTCG
CAGAGCGAGTGTGGCAAGACAGCTCGGGTCTGTTTTGCATTCTCTTGTGA
GCGGGGCGACTAACCTGGATACGATGGCTGCGGCCGGTGGTAAGTTGGAG
CCAATTAGAGACGGAGAAACTCGCAGAGCGAGTGTGGCAAGACAGCTCGG
GTCTGTTTTGCATTCTCTTGTGAGCGGGGCGACTAACCTGGATACGAACG
CAATAAAGGCGGCAATTCTAGAAGGTGGTGGAGCGGGAGTTTCTAGTATG
ACCGATCTCTGGGTCGACATCGCAGCTTCCGCCGAACTGGTCCCCATTGC
AGACATCCCTGTCATATGCGCAGCGGCAGGCGATGCTGCAGTTGGCGGGT
GTGTGTTGAGTGCCGCGGAATTGCCGTCAAGCAAGGAGTATTTACAACGC
GAGGACGGAGAGTGGACTATCGCCCATATGAACGCAATAAAGGCGGCAAT
TCTAGAAGGTGGTGGAGCGGGAGTTTCTAGTATGACCGATCTCTGGGTCG
ACATCGCAGCTTCCGCCGAACTGGTCCCCATTGCAGACATCCCTGTCATA
TGCGCAGCGGCAGGCGATGCTGCAGTTGGCGGGTGTGTGTTGAGTGCCGC
GGAATTGCCGTCAAGCAAGGAGTATTTACAACGCGAGGACGGAGAGTGGA
CTATCGCCCATATGTTACCTGTTGCAGACGGAGTGATTCTCGGTCAGGAT
GTTGGCGTGCGCGTGATTTGGGACACGCAGCAGCAAGCTCAACAGCTGGG
TCGTGATGCTGCTTTAGACATGATTTTTCATGCTGGTGCGCGGCTGTGGA
AAGAGGACCTCGGTGTCATCCCCCCGGTCGAGGGTGCTGATACCTCCACA
ATGAACCTTGTATACAAGAGAGAGTTTAAGGCTAAAGAGAGTGGCGTTGC
TGTATCAGCAGATGGCACCACTAGGACGGTGCGGCCAGGGACCGGCTGGC
CCAAAGTGCAGATCTTGGAGCGGTCCGCATCCAGTGCGGGGTCGACCACC
GCAGACACTTGGCACGTGCTCGAGTTACCTGTTGCAGACGGAGTGATTCT
CGGTCAGGATGTTGGCGTGCGCGTGATTTGGGACACGCAGCAGCAAGCTC
AACAGCTGGGTCGTGATGCTGCTTTAGACATGATTTTTCATGCTGGTGCG
CGGCTGTGGAAAGAGGACCTCGGTGTCATCCCCCCGGTCGAGGGTGCTGA
TACCTCCACAATGAACCTTGTATACAAGAGAGAGTTTAAGGCTAAAGAGA
GTGGCGTTGCTGTATCAGCAGATGGCACCACTAGGACGGTGCGGCCAGGG
ACCGGCTGGCCCAAAGTGCAGATCTTGGAGCGGTCCGCATCCAGTGCGGG
GTCGACCACCGCAGACACTTGGCACGTGCTCGAGACATTGACCCCGCTGC
TCAGCACTGCAACTGGCAAGAACGCTTCTGAGGGTGCTGAAGCGCCGACA
TTGACCCCGCTGCTCAGCACTGCAACTGGCAAGAACGCTTCTGAGGGTGC
TGAAGCGCCG
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