mRNA_D-dudresnayi_contig10414.445.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10414.445.1
Unique NamemRNA_D-dudresnayi_contig10414.445.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.970e-30
Identity = 68/122 (55.74%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATA----TAAEXXXXXXXXXX---------PSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWVLHD 327
            GAAS+VDG RFSRPRGLPEYG+WV +LE EGW  AT     TA E                   PS EA+E+D+LLDDVMLGFRL EGLDL  + +KYG  AA  VE G  EGL+ GWV+ D
Sbjct:  285 GAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRD 406          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.580e-29
Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATAT----AAEXXXXXXXXXX---------PSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWVLHD 327
            GAAS+VDG RFSRPRGLPEYG+WV +LE EGW  AT      A E                   PS EA+E+D+LLDDVMLGFRL EGLDL  + +KYG  AA  VE G  EG+++GWV+ D
Sbjct:  344 GAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRD 465          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: K9YWU0_DACSA (Heme chaperone HemW n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YWU0_DACSA)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-9
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWV 318
            GAAS++ G+RF+RPR   EY +WV+ L  E     T+T+               E  +++ LLD +MLG RL +G+DL AI  +YG +    + + ++  L R WV
Sbjct:  276 GAASFLAGKRFTRPRTRREYSQWVETLNQEN-NDLTSTS---------------EVDQQEQLLDTLMLGLRLQKGIDLSAIERQYGSECVKKITSVLSPYLDRNWV 365          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: K9S4J9_9CYAN (Heme chaperone HemW n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S4J9_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 2.520e-9
Identity = 41/109 (37.61%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWVLHD 327
            GAAS +DG+RF+RPR   EY  W+D+ EA+          +          PS    E D LLD +MLG RL EG+D  AI  ++G      +   +A   Q GWV  D
Sbjct:  275 GAASCLDGQRFTRPRTRSEYFAWIDRYEAD---------PQGAIADPENPAPS----ETDRLLDTLMLGLRLAEGVDAGAIAQRFGPAVLTSIHQTLAPYEQEGWVAWD 370          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A2P6TFS6_CHLSO (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFS6_CHLSO)

HSP 1 Score: 65.5 bits (158), Expect = 4.780e-9
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKY--GDDAAMGVEAGVAEGLQRGWVLHD 327
            GAASY++GRRFSRP+ L  Y +WV++   +G       A            P +     D LLD VML  RL +GLDL  + T++  G++AA  V   +   + RGWVL D
Sbjct: 4181 GAASYLEGRRFSRPKRLNAYRQWVEQYAGDGEAQDPQVAGSWL--------PRESG--DDRLLDTVMLRLRLADGLDLRQLATQHAQGEEAADIVLHALQPHIARGWVLAD 4281          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A3M1P741_9CYAN (Heme chaperone HemW n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1P741_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.180e-8
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWV 318
            GAASYV+ +RFSRPR   EY  W++ LEA G +                       + K+ LLD +MLG RL +GL+LD +  ++G+ A   +   +   ++RGWV
Sbjct:  292 GAASYVNHQRFSRPRTRREYFTWLETLEAAGGS-----------------LDCPPTLPKERLLDTLMLGLRLADGLNLDILTAEFGEAAIAPLLPRLQTHIERGWV 380          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A7J7PF65_9CHLO (HemN_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PF65_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.210e-8
Identity = 45/133 (33.83%), Postives = 63/133 (47.37%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDK-LEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWVL---------HDGKVEAKGIVADTEG 369
            GAASY  GRRFSRPRG+ EY  WV + +++ G   A A  AE                +++ LLD +ML  RL +GL L ++  +YG D    +   +   LQ G +           D   E  G V+D +G
Sbjct:  142 GAASYTQGRRFSRPRGMHEYESWVQRFVQSGGGCPAAALPAES---------------KEEQLLDLIMLSLRLSDGLALHSVQQEYGQDTVASLLPTIQGFLQEGLMQIVPELQQSGDDSAPEPGGCVSDADG 259          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A7J7PEC9_9CHLO (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PEC9_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.620e-8
Identity = 45/133 (33.83%), Postives = 63/133 (47.37%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDK-LEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWVL---------HDGKVEAKGIVADTEG 369
            GAASY  GRRFSRPRG+ EY  WV + +++ G   A A  AE                +++ LLD +ML  RL +GL L ++  +YG D    +   +   LQ G +           D   E  G V+D +G
Sbjct:  250 GAASYTQGRRFSRPRGMHEYESWVQRFVQSGGGCPAAALPAES---------------KEEQLLDLIMLSLRLSDGLALHSVQQEYGQDTVASLLPTIQGFLQEGLMQIVPELQQSGDDSAPEPGGCVSDADG 367          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A367QS50_9NOSO (Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367QS50_9NOSO)

HSP 1 Score: 63.2 bits (152), Expect = 2.130e-8
Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWV 318
            GAASYVDG+RF+RPR   EY RWV  L A G                    P +E      LL+ +MLG RL EGL+L  +  K+G+     +   +    ++GWV
Sbjct:  279 GAASYVDGKRFTRPRKTQEYYRWVQDLIANGGV------------IDWEVTPPEEI-----LLETLMLGLRLAEGLNLADLVEKFGEQKVKEIHKCLRSHFEKGWV 367          
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Match: A0A6M8B2M9_9CYAN (Heme chaperone HemW n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8B2M9_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 2.180e-8
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 1
Query:    1 GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEXXXXXXXXXXPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEGLQRGWV 318
            GAASYV+ +RFSRPR   EY +WV+ LEA G   A  T             P  E      LLD +MLG RL +GLDL  +  ++G  A   +   +   +QRGWV
Sbjct:  292 GAASYVNHQRFSRPRTRREYFQWVETLEAAGGRLAHPTT------------PPQER-----LLDTLMLGLRLADGLDLLRLELEFGKGAIARILTCLQPYVQRGWV 380          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10414.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K982_9PHAE1.970e-3055.74Radical SAM core domain-containing protein n=1 Tax... [more]
D7FRC0_ECTSI2.580e-2954.10Radical S-adenosyl methionine domain-containing pr... [more]
K9YWU0_DACSA2.510e-935.85Heme chaperone HemW n=2 Tax=Cyanobacteria TaxID=11... [more]
K9S4J9_9CYAN2.520e-937.61Heme chaperone HemW n=1 Tax=Geitlerinema sp. PCC 7... [more]
A0A2P6TFS6_CHLSO4.780e-938.74Radical S-adenosyl methionine domain-containing pr... [more]
A0A3M1P741_9CYAN1.180e-835.85Heme chaperone HemW n=1 Tax=Cyanobacteria bacteriu... [more]
A0A7J7PF65_9CHLO1.210e-833.83HemN_C domain-containing protein n=1 Tax=Scenedesm... [more]
A0A7J7PEC9_9CHLO1.620e-833.83Radical S-adenosyl methionine domain-containing pr... [more]
A0A367QS50_9NOSO2.130e-836.79Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162... [more]
A0A6M8B2M9_9CYAN2.180e-840.57Heme chaperone HemW n=3 Tax=Thermoleptolyngbya Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10414contigD-dudresnayi_contig10414:964..2272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D7FRC0
EggNOG free text desc.coproporphyrinogen oxidase activity
EggNOG OGs2QRH0@2759,COG0635@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size563
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.6819894-CDS-D-dudresnayi_contig10414:964..13481622927540.6819894-CDS-D-dudresnayi_contig10414:964..1348Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10414 965..1348 -
1690556799.488378-CDS-D-dudresnayi_contig10414:964..13481690556799.488378-CDS-D-dudresnayi_contig10414:964..1348Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10414 965..1348 -
1622927540.6958263-CDS-D-dudresnayi_contig10414:2095..22721622927540.6958263-CDS-D-dudresnayi_contig10414:2095..2272Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10414 2096..2272 -
1690556799.4989493-CDS-D-dudresnayi_contig10414:2095..22721690556799.4989493-CDS-D-dudresnayi_contig10414:2095..2272Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10414 2096..2272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10414.445.1prot_D-dudresnayi_contig10414.445.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10414 965..2272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10414.445.1

>prot_D-dudresnayi_contig10414.445.1 ID=prot_D-dudresnayi_contig10414.445.1|Name=mRNA_D-dudresnayi_contig10414.445.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=187bp
GAASYVDGRRFSRPRGLPEYGRWVDKLEAEGWTSATATAAEGGGGEGGGG
GPSDEAVEKDSLLDDVMLGFRLMEGLDLDAICTKYGDDAAMGVEAGVAEG
LQRGWVLHDGKVEAKGIVADTEGDGRDLGLLGNDRSGNRAGNGGNDDDDA
GRTGLPSRARSGSFPGGDDGDDAVIVDDNDSDEKMVD
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mRNA from alignment at D-dudresnayi_contig10414:964..2272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10414.445.1 ID=mRNA_D-dudresnayi_contig10414.445.1|Name=mRNA_D-dudresnayi_contig10414.445.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1309bp|location=Sequence derived from alignment at D-dudresnayi_contig10414:964..2272- (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGCGGCAAGCTACGTCGATGGCCGTCGGTTCTCGCGGCCCCGAGGTCT GCCGGAGTACGGGCGGTGGGTAGATAAGCTTGAGGCCGAAGGGTGGACGA GTGCTACGGCTACTGCCGCCGAAGGTGGTGGTGGTGAAGGTGGTGGTGGC GGTCCTTCTGACGAGGCAGTGGAGAAGGTTGGTCCGTGTGTGTGTTGTTG TTGTGGTGGTGGTGGTTGTTGTTGTTGTTGTTGGTTCCCGTAACATTTTT GCTTCCAGTGCACGCTTCGCGCTCCGTCTAGTGTACGCCGCTCTAAAGGG AAGGAGGGGGGGGGGGGGTATTTCCTCCCCCCCCTTGTTCTCTCGGCGGT GACCTCTCGCCTGGTCGTTATCGTCAGATCAGGCCTTGCAACGTTTTGCC GCGCGTGTACGTGGGTTTTGTTTTTAGTTTTAGTTTTTTTTTTATCCTGC AGCGGTAGTACTGGAACAGGATGAAGATGTCTGTGTGTGCTGCGGCATTG CCTTTGTAGAGCCTACTGCGTCTTGATCCATCAGCATAACATTTTCAATT TTTGACGTGTGTGCTGATGAACCTCTACCGATTTTCGCTTGCTGAAAGCC ATTTGACATATCTATCATAGAGCTCCATTACATCGTCACGTCACGGCTCA TGCATTTTTATTTTAAACTACTGTACTGTAATTACACACACACCGTATTT GTAGACACTGGTTGTTACATATTTTGTTGCGTTCCAGGTACCTTCTTTTT TTTTTACTTTTATTTTAATTTTATTTTATTTTCTTCGACATATTTTCATG AAAATGAAAATGAAAAACGTCCAACATTGAAAATTCAATATTGTTGGACG TTTTTCATCGCCGTATTTTCTTTCCTCTCTTCTCTCTCTCTCTTTCTCTC TGTCATTATCGGCGACAATTACAGGACTCTCTGCTAGACGATGTCATGCT GGGTTTCCGTCTTATGGAAGGCCTAGACCTTGACGCCATCTGCACCAAAT ACGGCGACGATGCCGCCATGGGGGTGGAGGCTGGTGTAGCGGAGGGCTTG CAGCGCGGCTGGGTTTTACACGATGGCAAGGTCGAGGCTAAGGGTATTGT TGCGGACACCGAGGGTGACGGGCGTGACTTGGGTCTTCTTGGAAATGATA GAAGCGGAAATAGAGCGGGGAATGGTGGCAATGATGATGATGATGCTGGG CGTACTGGTCTTCCTTCTCGTGCGAGGAGCGGTTCGTTCCCTGGGGGTGA CGATGGCGATGACGCGGTTATTGTCGATGATAATGATAGTGATGAAAAAA TGGTTGACC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10414:964..2272-

>mRNA_D-dudresnayi_contig10414.445.1 ID=mRNA_D-dudresnayi_contig10414.445.1|Name=mRNA_D-dudresnayi_contig10414.445.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at D-dudresnayi_contig10414:964..2272- (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGCGGCAAGCTACGTCGATGGCCGTCGGTTCTCGCGGCCCCGAGGTCT
GCCGGAGTACGGGCGGTGGGTAGATAAGCTTGAGGCCGAAGGGTGGACGA
GTGCTACGGCTACTGCCGCCGAAGGTGGTGGTGGTGAAGGTGGTGGTGGC
GGTCCTTCTGACGAGGCAGTGGAGAAGGGGGCGGCAAGCTACGTCGATGG
CCGTCGGTTCTCGCGGCCCCGAGGTCTGCCGGAGTACGGGCGGTGGGTAG
ATAAGCTTGAGGCCGAAGGGTGGACGAGTGCTACGGCTACTGCCGCCGAA
GGTGGTGGTGGTGAAGGTGGTGGTGGCGGTCCTTCTGACGAGGCAGTGGA
GAAGGACTCTCTGCTAGACGATGTCATGCTGGGTTTCCGTCTTATGGAAG
GCCTAGACCTTGACGCCATCTGCACCAAATACGGCGACGATGCCGCCATG
GGGGTGGAGGCTGGTGTAGCGGAGGGCTTGCAGCGCGGCTGGGTTTTACA
CGATGGCAAGGTCGAGGCTAAGGGTATTGTTGCGGACACCGAGGGTGACG
GGCGTGACTTGGGTCTTCTTGGAAATGATAGAAGCGGAAATAGAGCGGGG
AATGGTGGCAATGATGATGATGATGCTGGGCGTACTGGTCTTCCTTCTCG
TGCGAGGAGCGGTTCGTTCCCTGGGGGTGACGATGGCGATGACGCGGTTA
TTGTCGATGATAATGATAGTGATGAAAAAATGGTTGACGACTCTCTGCTA
GACGATGTCATGCTGGGTTTCCGTCTTATGGAAGGCCTAGACCTTGACGC
CATCTGCACCAAATACGGCGACGATGCCGCCATGGGGGTGGAGGCTGGTG
TAGCGGAGGGCTTGCAGCGCGGCTGGGTTTTACACGATGGCAAGGTCGAG
GCTAAGGGTATTGTTGCGGACACCGAGGGTGACGGGCGTGACTTGGGTCT
TCTTGGAAATGATAGAAGCGGAAATAGAGCGGGGAATGGTGGCAATGATG
ATGATGATGCTGGGCGTACTGGTCTTCCTTCTCGTGCGAGGAGCGGTTCG
TTCCCTGGGGGTGACGATGGCGATGACGCGGTTATTGTCGATGATAATGA
TAGTGATGAAAAAATGGTTGAC
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