mRNA_D-dudresnayi_contig104.434.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.434.1
Unique NamemRNA_D-dudresnayi_contig104.434.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:41485..42098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size315
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.7629597-UTR-D-dudresnayi_contig104:41484..417831622927539.7629597-UTR-D-dudresnayi_contig104:41484..41783Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 41485..41783 +
1690556799.0965362-UTR-D-dudresnayi_contig104:41484..417831690556799.0965362-UTR-D-dudresnayi_contig104:41484..41783Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 41485..41783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.7761972-CDS-D-dudresnayi_contig104:41783..420981622927539.7761972-CDS-D-dudresnayi_contig104:41783..42098Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 41784..42098 +
1690556799.1063328-CDS-D-dudresnayi_contig104:41783..420981690556799.1063328-CDS-D-dudresnayi_contig104:41783..42098Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 41784..42098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.434.1prot_D-dudresnayi_contig104.434.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 41784..42098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.434.1

>prot_D-dudresnayi_contig104.434.1 ID=prot_D-dudresnayi_contig104.434.1|Name=mRNA_D-dudresnayi_contig104.434.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=105bp
MLTKDLVDTDTNDWDAGEVYLIRNIYTTRFFSGDVMADEGCTSMITKIEQ
RYNQLFSTSIKQKTEVISANSIAAQMEKLLRKWGDKEGEQLVTMFGNVKG
IDAM*
back to top

mRNA from alignment at D-dudresnayi_contig104:41485..42098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.434.1 ID=mRNA_D-dudresnayi_contig104.434.1|Name=mRNA_D-dudresnayi_contig104.434.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at D-dudresnayi_contig104:41485..42098+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTCAAAAGATTACTTTGCTCCAGAGCAACCTTTCCAGTGGAATCTCCAGG
GCAATCGTTTGGGCGAATAGACCATAATTTGCTGTTACACCGTAACAAAT
GATTAAAACAGCAACAGATGTGCGCGTCCTTGGCAAGAGGAAGGCTTGTG
AGTTGAAAGAAGCTCTGACAAAGCTGGGATTTTCCGTTAAATAGAACGAA
AGGAAGGGAGTCCTGCAGGATAAATACGACCACGCGTGCGCCCTGCTTGA
CCTGAGGCTCGTAGATGAAGACCACACCTGGACCCGAGAAGAGTATGACA
TGTTGACGAAGGACCTGGTTGATACGGACACCAACGACTGGGACGCCGGA
GAAGTGTATCTAATCAGAAACATCTACACCACGAGATTCTTTTCCGGCGA
CGTGATGGCCGACGAGGGGTGTACGAGTATGATCACGAAGATAGAGCAAC
GCTACAACCAACTCTTCTCCACGTCCATCAAGCAGAAGACCGAGGTAATA
TCCGCTAATTCGATCGCCGCGCAAATGGAGAAGCTGCTGCGCAAGTGGGG
TGACAAGGAAGGGGAACAGCTGGTTACCATGTTCGGCAATGTAAAAGGGA
TTGACGCAATGTAA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig104:41485..42098+

>mRNA_D-dudresnayi_contig104.434.1 ID=mRNA_D-dudresnayi_contig104.434.1|Name=mRNA_D-dudresnayi_contig104.434.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at D-dudresnayi_contig104:41485..42098+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGACGAAGGACCTGGTTGATACGGACACCAACGACTGGGACGCCGG
AGAAGTGTATCTAATCAGAAACATCTACACCACGAGATTCTTTTCCGGCG
ACGTGATGGCCGACGAGGGGTGTACGAGTATGATCACGAAGATAGAGCAA
CGCTACAACCAACTCTTCTCCACGTCCATCAAGCAGAAGACCGAGGTAAT
ATCCGCTAATTCGATCGCCGCGCAAATGGAGAAGCTGCTGCGCAAGTGGG
GTGACAAGGAAGGGGAACAGCTGGTTACCATGTTCGGCAATGTAAAAGGG
ATTGACGCAATGTAAATGTTGACGAAGGACCTGGTTGATACGGACACCAA
CGACTGGGACGCCGGAGAAGTGTATCTAATCAGAAACATCTACACCACGA
GATTCTTTTCCGGCGACGTGATGGCCGACGAGGGGTGTACGAGTATGATC
ACGAAGATAGAGCAACGCTACAACCAACTCTTCTCCACGTCCATCAAGCA
GAAGACCGAGGTAATATCCGCTAATTCGATCGCCGCGCAAATGGAGAAGC
TGCTGCGCAAGTGGGGTGACAAGGAAGGGGAACAGCTGGTTACCATGTTC
GGCAATGTAAAAGGGATTGACGCAATGTAA
back to top