mRNA_D-dudresnayi_contig104.431.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.431.1
Unique NamemRNA_D-dudresnayi_contig104.431.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig104.431.1 vs. uniprot
Match: A0A7S3HJ65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ65_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.070e-37
Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 1 
Query:  265 VANFLDTVMPEES--RLHSSDTWLGFVGALLMKHDYTKVFFGSSQPLTRTIRFVHITLAFLLYLFFDSIFFSGAFPNSSTCERHESSNDCLSDENKVTDSLLCKWEVDSNITNGGYCVLNPPPRTFVFVISVSLAVVIVSVPVLFVYDLLLRNICAKRPSYE 744
            V NFL++VMP ES  +  +  TW  F+  +L  H YT +FFGSS    RT+R+  IT+AFLL LFFD+IFF   +P+  TC+     ++CL+ ++  T++ LC W +D   T  G+C LN PPR FV++I+V + +V++SVP    YD LL N C +RP +E
Sbjct:   85 VTNFLNSVMPVESLQQTGAEATWTSFLTTMLKHHKYTAIFFGSSVKFPRTLRWASITMAFLLNLFFDTIFFGVFYPDDGTCQDRTGEDNCLASDSSATNTNLCVWHIDQ-ATGQGFCGLNHPPRRFVYIITVVIVIVVISVPFQVAYDYLLYNFCVRRPRFE 245
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BLAST of mRNA_D-dudresnayi_contig104.431.1 vs. uniprot
Match: A0A7S3MEK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEK0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.030e-31
Identity = 80/236 (33.90%), Postives = 122/236 (51.69%), Query Frame = 1 
Query:   40 DKAVMIFMAILTLCIAVCMYAFWIVDRRDNRHRSEETKTVTNPGFDAGIVAADALQYDTQYDVKSDAHALDTPAAVANFLDTVMPEESRLHSSD-TWLGFVGALLMKHDYTKVFFGSSQPLTRTIRFVHITLAFLLYLFFDSIFFSGAFPNSSTCERHESSNDCLSDENKVTDSLLCKWEVDSNITNGGYCVLNPPPRTFVFVISVSLAVVIVSVPVLFVYDLLLRNICAKRPSYE 744
             K V+ F++ LT  I +    F I  R DNR R E  +                + YD  +  K D + +   A +  +LD++M   +     D +W      LL  H YT +FF  +Q    T+R+  IT+AFLL LF D++FF   +P++  CE +++   C    N+V+ + LC W V+ + T  G C +N PPRTFVF+I + L VV++S+P    YD LL  +C +RP +E
Sbjct:  246 QKIVLSFLSTLTFIIVL---GFIIARRTDNREREESVEEKHEKRAARFNKYTSDVYYDDIFADK-DFNEVSVVAVMDQYLDSIMVASNLSEQPDASWAAIFTTLLQHHKYTALFFAPTQNFNCTLRWTSITMAFLLNLFLDTVFFGVFYPDNENCEDYQTQETCFEPNNRVSYTRLCDWNVNES-TGVGSCGINKPPRTFVFLILIVLLVVVISIPFQVAYDYLLVQVCMRRPRFE 476
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3HJ65_9STRA1.070e-3744.44Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MEK0_9STRA6.030e-3133.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:18540..19556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1018
Cds size1017
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.6866934-CDS-D-dudresnayi_contig104:18539..195561622927539.6866934-CDS-D-dudresnayi_contig104:18539..19556Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 18540..19556 +
1690556799.076992-CDS-D-dudresnayi_contig104:18539..195561690556799.076992-CDS-D-dudresnayi_contig104:18539..19556Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 18540..19556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.431.1prot_D-dudresnayi_contig104.431.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 18540..19556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.431.1

>prot_D-dudresnayi_contig104.431.1 ID=prot_D-dudresnayi_contig104.431.1|Name=mRNA_D-dudresnayi_contig104.431.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=339bp
EVDNIRDYVYSIGDKAVMIFMAILTLCIAVCMYAFWIVDRRDNRHRSEET
KTVTNPGFDAGIVAADALQYDTQYDVKSDAHALDTPAAVANFLDTVMPEE
SRLHSSDTWLGFVGALLMKHDYTKVFFGSSQPLTRTIRFVHITLAFLLYL
FFDSIFFSGAFPNSSTCERHESSNDCLSDENKVTDSLLCKWEVDSNITNG
GYCVLNPPPRTFVFVISVSLAVVIVSVPVLFVYDLLLRNICAKRPSYEPT
PKRTAAAIAALSDPRLVHDAYSSADYEANQMLVEAKDFLTVPHNMNTSAD
QARLAAIQTQMGIYPSGHLKYPMDTADELLYRTQQNRLT
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mRNA from alignment at D-dudresnayi_contig104:18540..19556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.431.1 ID=mRNA_D-dudresnayi_contig104.431.1|Name=mRNA_D-dudresnayi_contig104.431.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1017bp|location=Sequence derived from alignment at D-dudresnayi_contig104:18540..19556+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAGGTGGACAACATCAGAGACTATGTGTACTCGATTGGCGACAAGGCCGT
GATGATCTTCATGGCCATCCTGACATTGTGCATCGCCGTGTGTATGTATG
CATTCTGGATTGTGGATCGTCGCGATAATCGCCATAGATCCGAGGAGACC
AAGACTGTGACCAACCCCGGCTTCGATGCTGGGATTGTTGCAGCAGATGC
TCTGCAGTACGATACTCAGTATGATGTGAAGTCCGACGCCCATGCCCTGG
ATACCCCTGCTGCAGTAGCCAACTTCCTGGACACTGTGATGCCGGAGGAG
AGCCGCCTGCACAGCTCCGACACCTGGCTGGGCTTTGTTGGAGCCCTGCT
GATGAAGCACGACTACACCAAAGTCTTCTTCGGCTCCTCCCAGCCGCTGA
CCCGCACCATCCGCTTTGTGCACATCACCCTGGCCTTCCTGCTGTACCTA
TTCTTCGACTCTATTTTCTTCAGTGGTGCTTTCCCTAACAGCAGCACTTG
TGAGCGCCACGAGTCCTCCAACGACTGTCTGTCTGACGAGAACAAGGTGA
CTGACTCCCTGCTCTGCAAGTGGGAGGTCGACAGCAACATCACTAATGGT
GGCTACTGTGTACTCAACCCTCCTCCCCGCACCTTCGTGTTCGTCATCTC
CGTGTCGCTGGCTGTCGTCATTGTCTCGGTGCCAGTGCTGTTCGTCTATG
ATCTCCTGCTTCGCAATATCTGCGCCAAGCGCCCCAGCTACGAGCCTACT
CCCAAGCGCACCGCCGCAGCGATCGCAGCCTTGTCCGATCCCCGACTGGT
TCATGATGCTTACTCGTCTGCTGACTACGAGGCCAACCAGATGCTTGTCG
AGGCCAAAGACTTCCTGACTGTGCCACACAACATGAACACCTCTGCCGAC
CAGGCCAGACTCGCAGCCATCCAGACTCAGATGGGCATCTATCCCAGTGG
TCACCTGAAGTACCCCATGGACACTGCCGATGAGCTGCTCTACCGCACCC
AGCAGAACAGACTGACC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig104:18540..19556+

>mRNA_D-dudresnayi_contig104.431.1 ID=mRNA_D-dudresnayi_contig104.431.1|Name=mRNA_D-dudresnayi_contig104.431.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at D-dudresnayi_contig104:18540..19556+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAGGTGGACAACATCAGAGACTATGTGTACTCGATTGGCGACAAGGCCGT
GATGATCTTCATGGCCATCCTGACATTGTGCATCGCCGTGTGTATGTATG
CATTCTGGATTGTGGATCGTCGCGATAATCGCCATAGATCCGAGGAGACC
AAGACTGTGACCAACCCCGGCTTCGATGCTGGGATTGTTGCAGCAGATGC
TCTGCAGTACGATACTCAGTATGATGTGAAGTCCGACGCCCATGCCCTGG
ATACCCCTGCTGCAGTAGCCAACTTCCTGGACACTGTGATGCCGGAGGAG
AGCCGCCTGCACAGCTCCGACACCTGGCTGGGCTTTGTTGGAGCCCTGCT
GATGAAGCACGACTACACCAAAGTCTTCTTCGGCTCCTCCCAGCCGCTGA
CCCGCACCATCCGCTTTGTGCACATCACCCTGGCCTTCCTGCTGTACCTA
TTCTTCGACTCTATTTTCTTCAGTGGTGCTTTCCCTAACAGCAGCACTTG
TGAGCGCCACGAGTCCTCCAACGACTGTCTGTCTGACGAGAACAAGGTGA
CTGACTCCCTGCTCTGCAAGTGGGAGGTCGACAGCAACATCACTAATGGT
GGCTACTGTGTACTCAACCCTCCTCCCCGCACCTTCGTGTTCGTCATCTC
CGTGTCGCTGGCTGTCGTCATTGTCTCGGTGCCAGTGCTGTTCGTCTATG
ATCTCCTGCTTCGCAATATCTGCGCCAAGCGCCCCAGCTACGAGCCTACT
CCCAAGCGCACCGCCGCAGCGATCGCAGCCTTGTCCGATCCCCGACTGGT
TCATGATGCTTACTCGTCTGCTGACTACGAGGCCAACCAGATGCTTGTCG
AGGCCAAAGACTTCCTGACTGTGCCACACAACATGAACACCTCTGCCGAC
CAGGCCAGACTCGCAGCCATCCAGACTCAGATGGGCATCTATCCCAGTGG
TCACCTGAAGTACCCCATGGACACTGCCGATGAGCTGCTCTACCGCACCC
AGCAGAACAGACTGACCGAGGTGGACAACATCAGAGACTATGTGTACTCG
ATTGGCGACAAGGCCGTGATGATCTTCATGGCCATCCTGACATTGTGCAT
CGCCGTGTGTATGTATGCATTCTGGATTGTGGATCGTCGCGATAATCGCC
ATAGATCCGAGGAGACCAAGACTGTGACCAACCCCGGCTTCGATGCTGGG
ATTGTTGCAGCAGATGCTCTGCAGTACGATACTCAGTATGATGTGAAGTC
CGACGCCCATGCCCTGGATACCCCTGCTGCAGTAGCCAACTTCCTGGACA
CTGTGATGCCGGAGGAGAGCCGCCTGCACAGCTCCGACACCTGGCTGGGC
TTTGTTGGAGCCCTGCTGATGAAGCACGACTACACCAAAGTCTTCTTCGG
CTCCTCCCAGCCGCTGACCCGCACCATCCGCTTTGTGCACATCACCCTGG
CCTTCCTGCTGTACCTATTCTTCGACTCTATTTTCTTCAGTGGTGCTTTC
CCTAACAGCAGCACTTGTGAGCGCCACGAGTCCTCCAACGACTGTCTGTC
TGACGAGAACAAGGTGACTGACTCCCTGCTCTGCAAGTGGGAGGTCGACA
GCAACATCACTAATGGTGGCTACTGTGTACTCAACCCTCCTCCCCGCACC
TTCGTGTTCGTCATCTCCGTGTCGCTGGCTGTCGTCATTGTCTCGGTGCC
AGTGCTGTTCGTCTATGATCTCCTGCTTCGCAATATCTGCGCCAAGCGCC
CCAGCTACGAGCCTACTCCCAAGCGCACCGCCGCAGCGATCGCAGCCTTG
TCCGATCCCCGACTGGTTCATGATGCTTACTCGTCTGCTGACTACGAGGC
CAACCAGATGCTTGTCGAGGCCAAAGACTTCCTGACTGTGCCACACAACA
TGAACACCTCTGCCGACCAGGCCAGACTCGCAGCCATCCAGACTCAGATG
GGCATCTATCCCAGTGGTCACCTGAAGTACCCCATGGACACTGCCGATGA
GCTGCTCTACCGCACCCAGCAGAACAGACTGACC
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