mRNA_D-dudresnayi_contig104.429.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.429.1
Unique NamemRNA_D-dudresnayi_contig104.429.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:13680..14027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.5699823-UTR-D-dudresnayi_contig104:13679..137061622927539.5699823-UTR-D-dudresnayi_contig104:13679..13706Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 13680..13706 +
1690556799.04938-UTR-D-dudresnayi_contig104:13679..137061690556799.04938-UTR-D-dudresnayi_contig104:13679..13706Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 13680..13706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.5837016-CDS-D-dudresnayi_contig104:13706..140271622927539.5837016-CDS-D-dudresnayi_contig104:13706..14027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 13707..14027 +
1690556799.0597806-CDS-D-dudresnayi_contig104:13706..140271690556799.0597806-CDS-D-dudresnayi_contig104:13706..14027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 13707..14027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.429.1prot_D-dudresnayi_contig104.429.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 13707..14027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.429.1

>prot_D-dudresnayi_contig104.429.1 ID=prot_D-dudresnayi_contig104.429.1|Name=mRNA_D-dudresnayi_contig104.429.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=107bp
MPFPNPVPFPVPFPMPVPMPIPMPVSLPIPMPVPMPIPFPVPVPMPIPMP
VPMPSPTTKPTLQPTANPSETPTVNPTAAPTPTPTANPTVSPTPAPSANP
TFTPTAA
back to top

mRNA from alignment at D-dudresnayi_contig104:13680..14027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.429.1 ID=mRNA_D-dudresnayi_contig104.429.1|Name=mRNA_D-dudresnayi_contig104.429.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at D-dudresnayi_contig104:13680..14027+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCGCTTCCTAATCAAGCCTCTGTTCCCATGCCTTTCCCCAATCCTGTTCC
ATTCCCTGTGCCCTTCCCTATGCCAGTACCAATGCCTATCCCTATGCCAG
TATCCCTGCCTATCCCTATGCCAGTACCGATGCCTATTCCATTCCCTGTG
CCTGTACCCATGCCTATCCCGATGCCAGTACCGATGCCTAGCCCCACAAC
GAAGCCTACCCTGCAGCCTACTGCAAATCCCAGCGAGACTCCCACCGTAA
ACCCCACTGCCGCGCCTACACCGACGCCAACTGCGAACCCGACTGTTTCC
CCTACGCCCGCCCCAAGTGCGAATCCCACATTCACCCCGACTGCAGCG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig104:13680..14027+

>mRNA_D-dudresnayi_contig104.429.1 ID=mRNA_D-dudresnayi_contig104.429.1|Name=mRNA_D-dudresnayi_contig104.429.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig104:13680..14027+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCTTTCCCCAATCCTGTTCCATTCCCTGTGCCCTTCCCTATGCCAGT
ACCAATGCCTATCCCTATGCCAGTATCCCTGCCTATCCCTATGCCAGTAC
CGATGCCTATTCCATTCCCTGTGCCTGTACCCATGCCTATCCCGATGCCA
GTACCGATGCCTAGCCCCACAACGAAGCCTACCCTGCAGCCTACTGCAAA
TCCCAGCGAGACTCCCACCGTAAACCCCACTGCCGCGCCTACACCGACGC
CAACTGCGAACCCGACTGTTTCCCCTACGCCCGCCCCAAGTGCGAATCCC
ACATTCACCCCGACTGCAGCGATGCCTTTCCCCAATCCTGTTCCATTCCC
TGTGCCCTTCCCTATGCCAGTACCAATGCCTATCCCTATGCCAGTATCCC
TGCCTATCCCTATGCCAGTACCGATGCCTATTCCATTCCCTGTGCCTGTA
CCCATGCCTATCCCGATGCCAGTACCGATGCCTAGCCCCACAACGAAGCC
TACCCTGCAGCCTACTGCAAATCCCAGCGAGACTCCCACCGTAAACCCCA
CTGCCGCGCCTACACCGACGCCAACTGCGAACCCGACTGTTTCCCCTACG
CCCGCCCCAAGTGCGAATCCCACATTCACCCCGACTGCAGCG
back to top