mRNA_D-dudresnayi_contig10396.424.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10396.424.1
Unique NamemRNA_D-dudresnayi_contig10396.424.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 4.360e-130
Identity = 211/246 (85.77%), Postives = 226/246 (91.87%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPG-QGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735
            R+VVVIYSSLSTCDPGD+HETIAKLK HKVRASV+GLGAEMFVLRR+TEETSGDY++A DENHYR+SLMAQCTPPPT PG +GA+FA+LVRMGFPAETQDVFPSLGYSGNRQELS SGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQF+EI AAA  XXXXXXXXXXXXXXXXXXXXXXX       + + CAGCLRDLSGL RYRCPEC  +FCLDCDMY+HDSLHNCPGCC
Sbjct:  168 REVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAA-PXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGCC 412          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.060e-91
Identity = 140/246 (56.91%), Postives = 168/246 (68.29%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-RYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735
            R+ VV+Y SL TCDPG++ +TIA LKRHKVR SV+GLGAE+++ RR+ E+T GD+ VA DE+HY+DSL+AQCTPPPT   +G  FA+LV MGFP      F +LGYSG +Q L++ GY CPRCK KT+ELPS C ICALPLVSSPHLARSYHHLFPVP F+E  A+A                                A  SC  CLR  +  A R+ CP C G+FCL+CDMYIHDSLHNCPGCC
Sbjct:  179 REAVVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEVYIARRIAEDTGGDFVVAVDEHHYKDSLLAQCTPPPTLAKRGPHFADLVEMGFPRRVDGTF-ALGYSGRQQTLTAQGYYCPRCKIKTTELPSTCEICALPLVSSPHLARSYHHLFPVPPFDEQEASAAADT----------------------------AAQSCEACLRPFAAKASRFMCPNCKGAFCLECDMYIHDSLHNCPGCC 395          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A0A9DDU4_ARUDO (C2H2-type domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A0A9DDU4_ARUDO)

HSP 1 Score: 212 bits (539), Expect = 2.310e-64
Identity = 109/248 (43.95%), Postives = 143/248 (57.66%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDL----SGLARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            ++V+++YS+L+TCDPGD+ ETI K K+ K+R SVIGL AE+F+ + + EET G YTVA DE+H+++ L+    PPP      A  A LV+MGFP    +   S+     + +  + GY CPRCK    ELP+EC  C L LVSSPHLARSYHHLFPV  F+E+S+                                   R +C GC + L          RCP+C   FCLDCD+YIH+SLHNCPGC
Sbjct:   90 KEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLVKMGFPQRGAEDLISICSCHKKIKTGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAPFDEVSSVTNRGQK---------------------------GRQNCFGCQQSLFSPDQSSLHVRCPKCDQHFCLDCDIYIHESLHNCPGC 308          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A662XNB6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNB6_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.690e-63
Identity = 115/249 (46.18%), Postives = 141/249 (56.63%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLR----DLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735
            R+VVV+Y +L T DPGD+ +T+A LKR  +R S IG+GAEM +LRR+ +ET+G Y VA D NH +  +     P PT     + FA LV MGFP         L      Q  ++ GY CPRCK+K+ +LP+ C +C LPLVSSPHLARSYHHLFPVP+F + +A                                  A   C  CL     D  G A YRCP CG SFC +CDMYIHDSLHNCPGCC
Sbjct:  179 REVVVVYGNLVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADETAGSYNVAVDTNHLKLLMTDFTFPCPTVATAASRFATLVEMGFPQRRSGA---LSLCTCHQAFTTVGYLCPRCKSKSCDLPTMCQVCNLPLVSSPHLARSYHHLFPVPKFAQRAAGK-------------------GLENGVTDAVPLSAAKKCFACLLPLGVDAEGSA-YRCPMCGNSFCNECDMYIHDSLHNCPGCC 404          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A485LTD2_9STRA (Aste57867_24758 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTD2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.620e-63
Identity = 109/244 (44.67%), Postives = 143/244 (58.61%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            +++VV+Y SL+T DPGD+  T++ L+R  +R S +G+GAEM +LRR+ +ET G Y+VA D++H+R+ + A  TP P+     A FA LV MGFP +       L      Q  ++ GY CPRCK+K+ ELP+ C +C LPLVSSPHLARSYHHLFPV  F++ +                                  I  A C  CL  L+  A Y CP C  +FC DCDMYIHDSLHNCPGC
Sbjct:  165 KEIVVVYGSLTTTDPGDIFATLSSLQRESIRCSFVGIGAEMHLLRRIAKETHGTYSVALDQSHFRELMAAFTTPCPSLASSVAKFATLVEMGFPQKRSGA---LSLCVCHQNFTTMGYLCPRCKSKSCELPTTCAVCNLPLVSSPHLARSYHHLFPVVNFDKKTVKE-------------------------------IKTAKCFSCLVPLNSHA-YVCPTCNHAFCSDCDMYIHDSLHNCPGC 373          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A662WW99_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW99_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.210e-62
Identity = 112/248 (45.16%), Postives = 139/248 (56.05%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA---RYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735
            R+VVV+Y +L T DPGD+ +T+A LKR  +R S IG+GAEM +LRR+ +ET+G Y VA D NH +  +     P PT     + FA LV MGFP         L      Q  ++ GY CPRCK+K+ +LP+ C +C LPLVSSPHLARSYHHLFPVP+F + +A                                  A   C  CL  L   A    Y+CP C  SFC +CDMYIHDSLHNCPGCC
Sbjct:   93 REVVVVYGNLVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADETAGSYNVAVDTNHLKLLMTDFTFPCPTVATAASRFATLVEMGFPQRRSGA---LSLCTCHQAFTTVGYLCPRCKSKSCDLPTMCQVCNLPLVSSPHLARSYHHLFPVPKFAQRAAGKGLKNGVTDAAPLP-------------------AAKKCFACLLPLGMEADGSAYKCPMCENSFCNECDMYIHDSLHNCPGCC 318          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR43_CINCA (GTF2H2 (Fragment) n=1 Tax=Cinnamomum camphora TaxID=13429 RepID=A0A097PR43_CINCA)

HSP 1 Score: 205 bits (521), Expect = 3.870e-62
Identity = 108/249 (43.37%), Postives = 144/249 (57.83%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSG-----LARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            R+V+++YS+LSTCDPGD+ ETI K K+ K+R SVIGL AE+++ + + EET G YTVA DE+H++D LM    PPP         A L++MGFP    +   ++  S +++     GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFP+  F E+S                                      +C GC +  S      + R  CP+C   FC+DCD+YIH+SLHNCPGC
Sbjct:   55 REVLILYSALSTCDPGDIIETIQKCKQAKIRCSVIGLSAEIYICKHLCEETGGSYTVALDESHFKDLLMEHAPPPPAI--AEFAVANLIKMGFPQRGAEGLIAI-CSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPISSFIEVSLTPSNSHQRLPR--------------------------NCFGCQQIFSTTGNIPILRVACPKCKQHFCVDCDIYIHESLHNCPGC 274          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR11_9MAGN (GTF2H2 (Fragment) n=1 Tax=Illicium henryi TaxID=114516 RepID=A0A097PR11_9MAGN)

HSP 1 Score: 208 bits (529), Expect = 5.540e-62
Identity = 106/249 (42.57%), Postives = 146/249 (58.63%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLAR-----YRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            R+V+++YS+LSTCDPGD+ ETI K K+ K+R SV+GL AE+++ + + EET G YTVA DE+H+++ L+    PPP         A +++MGFP    +   ++  S +++     GY+CPRCK +  ELP+EC IC L L+SSPHLARSYHHLFP+  F+E+ + A                                   +C GC R LS   R       CP+C   FCLDCD+YIH+SLHNCPGC
Sbjct:  166 REVLILYSALSTCDPGDILETIQKCKKAKIRCSVVGLSAEIYICKHLCEETGGSYTVAVDESHFKELLLEHAPPPPAI--AEFAVANMIKMGFPQRGAEGIIAI-CSCHKEAKIGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPITPFDEVPSTANNPSQRLPE--------------------------TCFGCRRSLSNPGRKSSIRVACPKCKQHFCLDCDIYIHESLHNCPGC 385          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: UPI001CC3733B (general transcription factor IIH subunit 2-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3733B)

HSP 1 Score: 209 bits (532), Expect = 7.190e-62
Identity = 107/249 (42.97%), Postives = 145/249 (58.23%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-----RYRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            R+V+++YS+LSTCDPGDV ETI K K+ K+R SV+GL AE+++ + + +ET G YTVA DE+H++D L+    PPP         A L++MGFP    + F S+  + +++     GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFP+  F+E+ ++ +                                   C GC   L         R  CP+C   FCLDCD+YIH+SLHNCPGC
Sbjct:  206 REVLILYSALSTCDPGDVMETIQKCKKSKIRCSVVGLSAEIYICKHLCQETGGSYTVALDESHFKDLLLEHAPPPPAI--AEFAVASLIKMGFPQRAAEGFVSI-CACHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVPSSLLNNPQHRLPRI-------------------------CFGCQLSLLNSGNKSSFRVACPKCNRHFCLDCDIYIHESLHNCPGC 426          
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR47_CABCA (GTF2H2 (Fragment) n=1 Tax=Cabomba caroliniana TaxID=4426 RepID=A0A097PR47_CABCA)

HSP 1 Score: 204 bits (520), Expect = 9.060e-62
Identity = 105/249 (42.17%), Postives = 143/249 (57.43%), Query Frame = 1
Query:    1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-----RYRCPECGGSFCLDCDMYIHDSLHNCPGC 732
            R+V+++YSSLSTCDPGDV ETI   K+ K+R SV+GL AE ++ + + EET G YTV+ DE+H+++ L+    PPP         A L++MGFP    +   ++  + +++     GY+CPRCK++  +LP EC IC L LVSSPHLARSYHHLFP+  FEE+S A +                                  +C  C +   G       R  CP+CG  FC DCD+YIH+SLHNCPGC
Sbjct:   76 REVLILYSSLSTCDPGDVMETIQNCKKAKIRCSVVGLSAETYICKHLCEETGGSYTVSLDESHFKELLLEHAPPPPAL--AEFAVANLIKMGFPQRGAEGLIAI-CACHKEAKVGGGYTCPRCKSRVCDLPIECQICGLTLVSSPHLARSYHHLFPIAPFEEVSVAKLSPRLPK----------------------------ACFACQQTFPGPGSKSSERVSCPKCGRHFCFDCDIYIHESLHNCPGC 293          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI4.360e-13085.77General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA1.060e-9156.91General transcription factor IIH subunit n=1 Tax=T... [more]
A0A0A9DDU4_ARUDO2.310e-6443.95C2H2-type domain-containing protein n=2 Tax=Poacea... [more]
A0A662XNB6_9STRA3.690e-6346.18Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A485LTD2_9STRA6.620e-6344.67Aste57867_24758 protein n=1 Tax=Aphanomyces stella... [more]
A0A662WW99_9STRA2.210e-6245.16Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A097PR43_CINCA3.870e-6243.37GTF2H2 (Fragment) n=1 Tax=Cinnamomum camphora TaxI... [more]
A0A097PR11_9MAGN5.540e-6242.57GTF2H2 (Fragment) n=1 Tax=Illicium henryi TaxID=11... [more]
UPI001CC3733B7.190e-6242.97general transcription factor IIH subunit 2-like n=... [more]
A0A097PR47_CABCA9.060e-6242.17GTF2H2 (Fragment) n=1 Tax=Cabomba caroliniana TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10396contigD-dudresnayi_contig10396:6282..10870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue3e-104
Seed eggNOG ortholog2880.D7FRP7
Preferred nameGTF2H2
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K01177,ko:K03142,ko:K14766
KEGG ReactionR02112,R03469,R11262
KEGG Pathwayko00500,ko00562,ko01100,ko03022,ko03420,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05203,ko05231,map00500,map00562,map01100,map03022,map03420,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05203,map05231
KEGG ModuleM00130,M00290
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016310,GO:0016567,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070816,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.nucleotide-excision repair
EggNOG OGsCOG5151@1,KOG2807@2759
EC2.7.1.68,3.2.1.2
COG Functional cat.KL
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03021,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGeneral transcription factor II H, polypeptide 2
Ec32 orthologEc-00_003360.1
Exons5
Model size738
Cds size738
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10396.424.1prot_D-dudresnayi_contig10396.424.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10396 6282..10870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.1493638-CDS-D-dudresnayi_contig10396:6281..64671622927539.1493638-CDS-D-dudresnayi_contig10396:6281..6467Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 6282..6467 -
1690556798.837453-CDS-D-dudresnayi_contig10396:6281..64671690556798.837453-CDS-D-dudresnayi_contig10396:6281..6467Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 6282..6467 -
1622927539.1603906-CDS-D-dudresnayi_contig10396:6518..66471622927539.1603906-CDS-D-dudresnayi_contig10396:6518..6647Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 6519..6647 -
1690556798.8520982-CDS-D-dudresnayi_contig10396:6518..66471690556798.8520982-CDS-D-dudresnayi_contig10396:6518..6647Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 6519..6647 -
1622927539.173342-CDS-D-dudresnayi_contig10396:8123..82521622927539.173342-CDS-D-dudresnayi_contig10396:8123..8252Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 8124..8252 -
1690556798.8646371-CDS-D-dudresnayi_contig10396:8123..82521690556798.8646371-CDS-D-dudresnayi_contig10396:8123..8252Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 8124..8252 -
1622927539.1918507-CDS-D-dudresnayi_contig10396:8612..87831622927539.1918507-CDS-D-dudresnayi_contig10396:8612..8783Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 8613..8783 -
1690556798.8743489-CDS-D-dudresnayi_contig10396:8612..87831690556798.8743489-CDS-D-dudresnayi_contig10396:8612..8783Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 8613..8783 -
1622927539.202226-CDS-D-dudresnayi_contig10396:10747..108701622927539.202226-CDS-D-dudresnayi_contig10396:10747..10870Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 10748..10870 -
1690556798.88279-CDS-D-dudresnayi_contig10396:10747..108701690556798.88279-CDS-D-dudresnayi_contig10396:10747..10870Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10396 10748..10870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10396.424.1

>prot_D-dudresnayi_contig10396.424.1 ID=prot_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=246bp
RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEE
TSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDV
FPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARS
YHHLFPVPQFEEISAAAVAAAASAATAADPGNGAAGARGAAPGGGAGAIA
RASCAGCLRDLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGCC*
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mRNA from alignment at D-dudresnayi_contig10396:6282..10870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10396.424.1 ID=mRNA_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4589bp|location=Sequence derived from alignment at D-dudresnayi_contig10396:6282..10870- (Desmarestia dudresnayi DdudBR16 monoicous)
CGTAAGGTGGTTGTGATTTACAGTAGTTTGAGCACATGCGACCCAGGGGA CGTTCACGAAACTATCGCCAAGCTGAAACGGCACAAAGTGCGCGCGTCGG TGATCGGTCTAGGGGCAGAGATGGTGAGAGCAGGTCTTCTCGAGTACATA AGAGGTGACGGGCGTGCGTGGGGTAGTGTTGCGCTAGTCGCGGGCGGAGG GGGGGGGGGGGGGGGGGGACTCTTTTTGTTGCTGGCCTGTGTAGTTGGAG TATTGAGAACGTATCCTTTTCGAGTGGGAGCCCGCGTGCTACTCNNNNNN NCTGGGGGGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTAC TCATTTTGTTGCTTGCCTTAGTACTTTGACTATTGACCACGTATCCATTT CGAGACGGAGCGCCGTTCCTACTCCTGCTAGGGACACTTTCAACATTTTT TATGCGCTCTTTACGTTTCACCATATGTATATTGTGCTTGTCTTATCTCC TTCCTGTTTCGCCTTTTGCGGCGGAGTGGGTGGGGGGTAAGACCTTTTGC GTTTGTGTGGGTGCGGTCATACAAAATGGGGTTCGTGGTTCCTATCCCAT GCCAAGCATGGTTGGACGTGTATTGGTGGTGATGTATAGCCCTCTCGCCT TTTGTACTACGGCAGGAAATACGGTACCCTCCATTTCCTCGTTGTGACGA TGCGAGGTCAATTTTACGTTTGCCATGGGTAGACGCGCCGCCTTTGCAGA GGGTGGCTCCTTTGGCATGGGTTATTTAGGGGGCGCGAGGAAGTTGACGA TGTGCTTTATCCATGAGCTTATTTGACACTCCGTGAGGTTATCGGTCGAA GGGTTAAGGCCCTCCTGAACGAGACTACTGTCCGTAGTGGAGGACCGCCA TCACATCCTCTTGGGTGTCCTTTGAAACATAGAAAGTGTTGGAACGTTGG AACGTAGGAACGCCCTGGAGCGTTTCCCTTGTTATTATCGTTGTCCGCCA GGAGTACACGAGCACCGCTTACACTCTTGCCAATTGCATCACACGTGCCA TTCCTGTACTAACCATTGTGTGTGGCACGGTGTGTGTTAGGCGTAAACGT GGAGATCCAAGGCCCTCGCAGTACTTTCTGAGTATTAAGTCACTTGGTGT TGAATGTGCAGCATTCGGCTATGATACCCGGGACGATGTCCAATAAACCA ACCCATATGGCTTATTGGTTTGGCGTTACAGTAGGAAGGCAAGGGCTAGT GACTGGCAGCTGGTATCGTCAACCATTTGTGAAACGCAAGCCTGGGACAG CGCCAGCCCGGCGATTCGCTCCGTCTTGGATTGTTTTCGGTGTGTTGAGA TGAGCAGCCTGCGACTGTTGCATGCGTCACAAGGAATATGTACGCCCCCC CCCCCCCCCCCCCCCCCCCTCTGTCACTTGTGCTGATGAAAGGGATAATA ACATGAATAGAAATTANNNNNNNNNNTTGGGTTGTTTTTGGGGGGGTGAG GGGGGAAGCCCGGGGCTGGTGCCTGCGTCAAAAGGAAAATTGTCGCCCCC CCCCCCCCCCCCATCTCCTCTTGGTTCCCGTGTGTTGAGACAAATAAATA TCCAGAATAATGTGATGGTACTGATCGTTACATATAATGTGCACGATGTA TATTCGATAGCGACACATGTTGTTGGCTTCGTCGCGTGTTTTGCTATATT TTAGGGAAAGGAGCATCCGTCGTTGTCAAGTCTTGGGTGCCCCCCCCCCC CCCTCTGCCTGAAACCCCCCCTCCACACTCGATCTATCATTTGTCAGCGT GGGCAATCATGTCGACTACTACCGACTCTCCAAAGCGACAAAAAAAAAGA AAACTGAATCCCCGCAAATTGGCCGACAACCTTGCAGTAAACACGAGGCA CACGTGTAGGTAACATCGGGCAGCCAAACTCGTCTCTCTCTCTCTCTCTT TCTCTGCCTATCCCCCCTCTTTTCCCGCTCCAATATTGTCACCATGCGAC ACATATTGCCGATTGTCGCTTTCACGGGAAACTCAAGTTTGTTCTGAGAC GCGTTACGGAGGAGACGAGCGGCGACTATACCGTGGCAACCGACGAGAAC CACTATCGAGACTCGCTCATGGCGCAGTGTACTCCACCGCCGACACAGCC GGGCCAGGGGGCTCTCTTTGCCGAGCTCGTACGGATGGGTTTTCCAGCTG AAACTCAGGTGACGACTGTGAAATATGGCGTGTTTGTTGCGGGGTCGGGG TGGTGGGGTTCTTGGGGGGGGGTGTACGGGAAGGCTGACGTTTTTTTTTC TGTTTTTGTATTATTCGTCCGCATTATTTTTGGTCAAAGCCACGCGCACC CCTCCAAGACGGCAGGGGTAAAAATTAGCAACGCTGTCACGCTGCGCTTG AGCTTTTGATGTGTATGTCGATCGCGAACATATTTGTATTGTTAGAACTA CAACATGGTTTGTTTTTTTGTGGATTTGCCGGAGTTTAACACGCGGTGAA TGTACCCCCCCCTAATGTCATACCACGACCCCACCCCTCCCCGCTGGCTG ACGGGCGCGTCGATTCAGGATGTGTTTCCTAGCCTGGGCTACAGTGGCAA CCGGCAGGAGCTTTCGTCATCGGGGTACAGCTGCCCGCGCTGTAAGACAA AGACGTCCGAGCTGCCATCCGAGTGTGTCATCTGTGCGCTTCCTCTGGTG AGAGCCCCGGTGTCGAATGTAGCTGCTTGTCGTTTGGGCGGGGGGCGCTT CAGATACACAGGTCGACGCCTGCCTACTTCTCTTTTAGCCGTGTACTTCG AAGTATTTCTACGCGAATGCATGAGCGTCGAGTGCTTATGATGGAAGAAA CTACACGCTACTGCTTTGTAGGGAAACTTTTTATCAATTCGAAGGCATCC AGCGCCTATCGATACCCCCCCCCCCCGTTCAGGGTTACGGCCGGCAGGAT AGGAAACCACGTTTTTGAACCGCCTTTGGCATGGCGGTTAGCGACTCGAA AACGCTCTTATGGCAGTAGTGTTCTACCTGGTATCTCATAAGGGGATAGC ATGATCAATGAGACTTCGGTTAAGCCATGGAAAGCGAGAGTATGCCCCCC GCGCCCCCCCGTTGCCGCTGCAAGATTTTTTTTTTGCTCTTTTGCCACGG AGCTGTGAAAGTGCTATATATTGTTGGCATGGTGTGATTATATCAAGCGG GCCTCGGGGTGTTATGATACTTGAAGATTCAAGGCTCACCCCAACAAGGC TATAGGGGGAAAGGACGCGACAACTTCTTCTTGGATTTCTGCGGATGCAA TGGTTGGGTTATTGGAACTCCCTACGATAGAGCACTAATCCAACACTTGA CCCACGCCTGAACTCGGGTAGGGTGTACCGTAACTGGGCCGAGTCAGGCG GGACAAGGCGACGTAGTCTGGGTTTTTGTTCGTGGGTGAGCTTGCGCGGC AAATCTCACACTACTACTACCCGGAGGAGGGGTGACGTTCAACGTTGCCT CTTCGGGTGGCTATCTCTCTCCAAGGCCAACAGCCCCCGACGTATCGTAC CCGCGCTGTAATGGAAACGTTGTGTTCCACAATGACTGATGTTAAATAGG CGATGGGTGATCACGACACGATTATCAAAAGCCGCGCAGGTTTGTGGAGC TTCAGGTTAGCTTTTGCCCATCTGCCGGAGGATGAAAACATACACACACA CACACGCTTGCGACCATCTTCCGTCAGGAATACGTAAGAAGGTTATACGT TATACCCTATATATCACCTATTGTATGTTATTATACGGTATCAACCATTG TTGTGTACCGACCATTGTGTGTGGCACGGTGTATTTTTTTAGTTAACACG TACACTTGGAAATCGAAGTCTCTCCCGGTACGTACTTGGAGGGTAGTTAA GCACGCTTGCATGTCTGCAGCTTTCGGCCACCCGGTCTGACGAACCAACC CATCGCACGTCGTTTTTGGCGTAGCAATGCGAGGGTTCAAAGATAGATAT TTATCCTGTCATCATCGTGAAACGCAGCACCTGTCCAGCAAAACCCCGGT ATGTTGCCCGATCCTGGCATTGCTGCGATTCGCGGTCAATGGAAAAAAAT AACTATCGGCATGCGTTATCATTAACATACTCCGCTCCCAACCCCCGACC CCCGCTCGATCATACCCTATCAGGTGTCCTCGCCGCATCTGGCGCGTTCC TATCACCACCTTTTCCCCGTACCTCAGTTCGAGGAAATTTCTGCCGCGGC CGTAGCAGCCGCGGCGTCAGCGGCTACGGCGGCTGATCCAGGAAACGGTG CCGTAGTATCCGGTGCAGTAACGGCAGTAAGGCAAGGCAAGCAAGGGGTC AAGGCGGGGGCCAGAGGTGCCGCCCCGGGGGGGGGGGCAGGGGCAATAGC GAGGGCTTCGTGTGCAGGCTGCCTGCGAGATTTGTCGGGGCTCGCAAGGT ATCGGTGTCCAGAATGTGGGGGCAGTTTCTGCTTGGATTGCGACATGTAT ATCCACGATTCGTTGCATAACTGCCCGGGGTGCTGCTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10396:6282..10870-

>mRNA_D-dudresnayi_contig10396.424.1 ID=mRNA_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at D-dudresnayi_contig10396:6282..10870- (Desmarestia dudresnayi DdudBR16 monoicous)
CGTAAGGTGGTTGTGATTTACAGTAGTTTGAGCACATGCGACCCAGGGGA
CGTTCACGAAACTATCGCCAAGCTGAAACGGCACAAAGTGCGCGCGTCGG
TGATCGGTCTAGGGGCAGAGATGCGTAAGGTGGTTGTGATTTACAGTAGT
TTGAGCACATGCGACCCAGGGGACGTTCACGAAACTATCGCCAAGCTGAA
ACGGCACAAAGTGCGCGCGTCGGTGATCGGTCTAGGGGCAGAGATGTTTG
TTCTGAGACGCGTTACGGAGGAGACGAGCGGCGACTATACCGTGGCAACC
GACGAGAACCACTATCGAGACTCGCTCATGGCGCAGTGTACTCCACCGCC
GACACAGCCGGGCCAGGGGGCTCTCTTTGCCGAGCTCGTACGGATGGGTT
TTCCAGCTGAAACTCAGTTTGTTCTGAGACGCGTTACGGAGGAGACGAGC
GGCGACTATACCGTGGCAACCGACGAGAACCACTATCGAGACTCGCTCAT
GGCGCAGTGTACTCCACCGCCGACACAGCCGGGCCAGGGGGCTCTCTTTG
CCGAGCTCGTACGGATGGGTTTTCCAGCTGAAACTCAGGATGTGTTTCCT
AGCCTGGGCTACAGTGGCAACCGGCAGGAGCTTTCGTCATCGGGGTACAG
CTGCCCGCGCTGTAAGACAAAGACGTCCGAGCTGCCATCCGAGTGTGTCA
TCTGTGCGCTTCCTCTGGATGTGTTTCCTAGCCTGGGCTACAGTGGCAAC
CGGCAGGAGCTTTCGTCATCGGGGTACAGCTGCCCGCGCTGTAAGACAAA
GACGTCCGAGCTGCCATCCGAGTGTGTCATCTGTGCGCTTCCTCTGGTGT
CCTCGCCGCATCTGGCGCGTTCCTATCACCACCTTTTCCCCGTACCTCAG
TTCGAGGAAATTTCTGCCGCGGCCGTAGCAGCCGCGGCGTCAGCGGCTAC
GGCGGCTGATCCAGGAAACGGTGCCGTGTCCTCGCCGCATCTGGCGCGTT
CCTATCACCACCTTTTCCCCGTACCTCAGTTCGAGGAAATTTCTGCCGCG
GCCGTAGCAGCCGCGGCGTCAGCGGCTACGGCGGCTGATCCAGGAAACGG
TGCCGCGGGGGCCAGAGGTGCCGCCCCGGGGGGGGGGGCAGGGGCAATAG
CGAGGGCTTCGTGTGCAGGCTGCCTGCGAGATTTGTCGGGGCTCGCAAGG
TATCGGTGTCCAGAATGTGGGGGCAGTTTCTGCTTGGATTGCGACATGTA
TATCCACGATTCGTTGCATAACTGCCCGGGGTGCTGCTGAGCGGGGGCCA
GAGGTGCCGCCCCGGGGGGGGGGGCAGGGGCAATAGCGAGGGCTTCGTGT
GCAGGCTGCCTGCGAGATTTGTCGGGGCTCGCAAGGTATCGGTGTCCAGA
ATGTGGGGGCAGTTTCTGCTTGGATTGCGACATGTATATCCACGATTCGT
TGCATAACTGCCCGGGGTGCTGCTGA
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