mRNA_D-dudresnayi_contig10396.424.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous
Overview
Homology
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI) HSP 1 Score: 382 bits (982), Expect = 4.360e-130 Identity = 211/246 (85.77%), Postives = 226/246 (91.87%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPG-QGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735 R+VVVIYSSLSTCDPGD+HETIAKLK HKVRASV+GLGAEMFVLRR+TEETSGDY++A DENHYR+SLMAQCTPPPT PG +GA+FA+LVRMGFPAETQDVFPSLGYSGNRQELS SGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQF+EI AAA XXXXXXXXXXXXXXXXXXXXXXX + + CAGCLRDLSGL RYRCPEC +FCLDCDMY+HDSLHNCPGCC Sbjct: 168 REVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAA-PXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGCC 412
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.060e-91 Identity = 140/246 (56.91%), Postives = 168/246 (68.29%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-RYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735 R+ VV+Y SL TCDPG++ +TIA LKRHKVR SV+GLGAE+++ RR+ E+T GD+ VA DE+HY+DSL+AQCTPPPT +G FA+LV MGFP F +LGYSG +Q L++ GY CPRCK KT+ELPS C ICALPLVSSPHLARSYHHLFPVP F+E A+A A SC CLR + A R+ CP C G+FCL+CDMYIHDSLHNCPGCC Sbjct: 179 REAVVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEVYIARRIAEDTGGDFVVAVDEHHYKDSLLAQCTPPPTLAKRGPHFADLVEMGFPRRVDGTF-ALGYSGRQQTLTAQGYYCPRCKIKTTELPSTCEICALPLVSSPHLARSYHHLFPVPPFDEQEASAAADT----------------------------AAQSCEACLRPFAAKASRFMCPNCKGAFCLECDMYIHDSLHNCPGCC 395
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A0A9DDU4_ARUDO (C2H2-type domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A0A9DDU4_ARUDO) HSP 1 Score: 212 bits (539), Expect = 2.310e-64 Identity = 109/248 (43.95%), Postives = 143/248 (57.66%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDL----SGLARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732 ++V+++YS+L+TCDPGD+ ETI K K+ K+R SVIGL AE+F+ + + EET G YTVA DE+H+++ L+ PPP A A LV+MGFP + S+ + + + GY CPRCK ELP+EC C L LVSSPHLARSYHHLFPV F+E+S+ R +C GC + L RCP+C FCLDCD+YIH+SLHNCPGC Sbjct: 90 KEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLVKMGFPQRGAEDLISICSCHKKIKTGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAPFDEVSSVTNRGQK---------------------------GRQNCFGCQQSLFSPDQSSLHVRCPKCDQHFCLDCDIYIHESLHNCPGC 308
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A662XNB6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNB6_9STRA) HSP 1 Score: 211 bits (538), Expect = 3.690e-63 Identity = 115/249 (46.18%), Postives = 141/249 (56.63%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLR----DLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735 R+VVV+Y +L T DPGD+ +T+A LKR +R S IG+GAEM +LRR+ +ET+G Y VA D NH + + P PT + FA LV MGFP L Q ++ GY CPRCK+K+ +LP+ C +C LPLVSSPHLARSYHHLFPVP+F + +A A C CL D G A YRCP CG SFC +CDMYIHDSLHNCPGCC Sbjct: 179 REVVVVYGNLVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADETAGSYNVAVDTNHLKLLMTDFTFPCPTVATAASRFATLVEMGFPQRRSGA---LSLCTCHQAFTTVGYLCPRCKSKSCDLPTMCQVCNLPLVSSPHLARSYHHLFPVPKFAQRAAGK-------------------GLENGVTDAVPLSAAKKCFACLLPLGVDAEGSA-YRCPMCGNSFCNECDMYIHDSLHNCPGCC 404
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A485LTD2_9STRA (Aste57867_24758 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTD2_9STRA) HSP 1 Score: 210 bits (534), Expect = 6.620e-63 Identity = 109/244 (44.67%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732 +++VV+Y SL+T DPGD+ T++ L+R +R S +G+GAEM +LRR+ +ET G Y+VA D++H+R+ + A TP P+ A FA LV MGFP + L Q ++ GY CPRCK+K+ ELP+ C +C LPLVSSPHLARSYHHLFPV F++ + I A C CL L+ A Y CP C +FC DCDMYIHDSLHNCPGC Sbjct: 165 KEIVVVYGSLTTTDPGDIFATLSSLQRESIRCSFVGIGAEMHLLRRIAKETHGTYSVALDQSHFRELMAAFTTPCPSLASSVAKFATLVEMGFPQKRSGA---LSLCVCHQNFTTMGYLCPRCKSKSCELPTTCAVCNLPLVSSPHLARSYHHLFPVVNFDKKTVKE-------------------------------IKTAKCFSCLVPLNSHA-YVCPTCNHAFCSDCDMYIHDSLHNCPGC 373
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A662WW99_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW99_9STRA) HSP 1 Score: 207 bits (526), Expect = 2.210e-62 Identity = 112/248 (45.16%), Postives = 139/248 (56.05%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA---RYRCPECGGSFCLDCDMYIHDSLHNCPGCC 735 R+VVV+Y +L T DPGD+ +T+A LKR +R S IG+GAEM +LRR+ +ET+G Y VA D NH + + P PT + FA LV MGFP L Q ++ GY CPRCK+K+ +LP+ C +C LPLVSSPHLARSYHHLFPVP+F + +A A C CL L A Y+CP C SFC +CDMYIHDSLHNCPGCC Sbjct: 93 REVVVVYGNLVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADETAGSYNVAVDTNHLKLLMTDFTFPCPTVATAASRFATLVEMGFPQRRSGA---LSLCTCHQAFTTVGYLCPRCKSKSCDLPTMCQVCNLPLVSSPHLARSYHHLFPVPKFAQRAAGKGLKNGVTDAAPLP-------------------AAKKCFACLLPLGMEADGSAYKCPMCENSFCNECDMYIHDSLHNCPGCC 318
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR43_CINCA (GTF2H2 (Fragment) n=1 Tax=Cinnamomum camphora TaxID=13429 RepID=A0A097PR43_CINCA) HSP 1 Score: 205 bits (521), Expect = 3.870e-62 Identity = 108/249 (43.37%), Postives = 144/249 (57.83%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSG-----LARYRCPECGGSFCLDCDMYIHDSLHNCPGC 732 R+V+++YS+LSTCDPGD+ ETI K K+ K+R SVIGL AE+++ + + EET G YTVA DE+H++D LM PPP A L++MGFP + ++ S +++ GY+CPRCK + ELP+EC IC L LVSSPHLARSYHHLFP+ F E+S +C GC + S + R CP+C FC+DCD+YIH+SLHNCPGC Sbjct: 55 REVLILYSALSTCDPGDIIETIQKCKQAKIRCSVIGLSAEIYICKHLCEETGGSYTVALDESHFKDLLMEHAPPPPAI--AEFAVANLIKMGFPQRGAEGLIAI-CSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPISSFIEVSLTPSNSHQRLPR--------------------------NCFGCQQIFSTTGNIPILRVACPKCKQHFCVDCDIYIHESLHNCPGC 274
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR11_9MAGN (GTF2H2 (Fragment) n=1 Tax=Illicium henryi TaxID=114516 RepID=A0A097PR11_9MAGN) HSP 1 Score: 208 bits (529), Expect = 5.540e-62 Identity = 106/249 (42.57%), Postives = 146/249 (58.63%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLAR-----YRCPECGGSFCLDCDMYIHDSLHNCPGC 732 R+V+++YS+LSTCDPGD+ ETI K K+ K+R SV+GL AE+++ + + EET G YTVA DE+H+++ L+ PPP A +++MGFP + ++ S +++ GY+CPRCK + ELP+EC IC L L+SSPHLARSYHHLFP+ F+E+ + A +C GC R LS R CP+C FCLDCD+YIH+SLHNCPGC Sbjct: 166 REVLILYSALSTCDPGDILETIQKCKKAKIRCSVVGLSAEIYICKHLCEETGGSYTVAVDESHFKELLLEHAPPPPAI--AEFAVANMIKMGFPQRGAEGIIAI-CSCHKEAKIGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPITPFDEVPSTANNPSQRLPE--------------------------TCFGCRRSLSNPGRKSSIRVACPKCKQHFCLDCDIYIHESLHNCPGC 385
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: UPI001CC3733B (general transcription factor IIH subunit 2-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3733B) HSP 1 Score: 209 bits (532), Expect = 7.190e-62 Identity = 107/249 (42.97%), Postives = 145/249 (58.23%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-----RYRCPECGGSFCLDCDMYIHDSLHNCPGC 732 R+V+++YS+LSTCDPGDV ETI K K+ K+R SV+GL AE+++ + + +ET G YTVA DE+H++D L+ PPP A L++MGFP + F S+ + +++ GY+CPRCK + ELP+EC IC L LVSSPHLARSYHHLFP+ F+E+ ++ + C GC L R CP+C FCLDCD+YIH+SLHNCPGC Sbjct: 206 REVLILYSALSTCDPGDVMETIQKCKKSKIRCSVVGLSAEIYICKHLCQETGGSYTVALDESHFKDLLLEHAPPPPAI--AEFAVASLIKMGFPQRAAEGFVSI-CACHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVPSSLLNNPQHRLPRI-------------------------CFGCQLSLLNSGNKSSFRVACPKCNRHFCLDCDIYIHESLHNCPGC 426
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Match: A0A097PR47_CABCA (GTF2H2 (Fragment) n=1 Tax=Cabomba caroliniana TaxID=4426 RepID=A0A097PR47_CABCA) HSP 1 Score: 204 bits (520), Expect = 9.060e-62 Identity = 105/249 (42.17%), Postives = 143/249 (57.43%), Query Frame = 1 Query: 1 RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEETSGDYTVATDENHYRDSLMAQCTPPPTQPGQGALFAELVRMGFPAETQDVFPSLGYSGNRQELSSSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFEEISAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARASCAGCLRDLSGLA-----RYRCPECGGSFCLDCDMYIHDSLHNCPGC 732 R+V+++YSSLSTCDPGDV ETI K+ K+R SV+GL AE ++ + + EET G YTV+ DE+H+++ L+ PPP A L++MGFP + ++ + +++ GY+CPRCK++ +LP EC IC L LVSSPHLARSYHHLFP+ FEE+S A + +C C + G R CP+CG FC DCD+YIH+SLHNCPGC Sbjct: 76 REVLILYSSLSTCDPGDVMETIQNCKKAKIRCSVVGLSAETYICKHLCEETGGSYTVSLDESHFKELLLEHAPPPPAL--AEFAVANLIKMGFPQRGAEGLIAI-CACHKEAKVGGGYTCPRCKSRVCDLPIECQICGLTLVSSPHLARSYHHLFPIAPFEEVSVAKLSPRLPK----------------------------ACFACQQTFPGPGSKSSERVSCPKCGRHFCFDCDIYIHESLHNCPGC 293 The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10396.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10396.424.1 >prot_D-dudresnayi_contig10396.424.1 ID=prot_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=246bp RKVVVIYSSLSTCDPGDVHETIAKLKRHKVRASVIGLGAEMFVLRRVTEEback to top mRNA from alignment at D-dudresnayi_contig10396:6282..10870- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dudresnayi_contig10396.424.1 ID=mRNA_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4589bp|location=Sequence derived from alignment at D-dudresnayi_contig10396:6282..10870- (Desmarestia dudresnayi DdudBR16 monoicous)back to top Coding sequence (CDS) from alignment at D-dudresnayi_contig10396:6282..10870- >mRNA_D-dudresnayi_contig10396.424.1 ID=mRNA_D-dudresnayi_contig10396.424.1|Name=mRNA_D-dudresnayi_contig10396.424.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at D-dudresnayi_contig10396:6282..10870- (Desmarestia dudresnayi DdudBR16 monoicous)back to top |