mRNA_D-dudresnayi_contig10363.391.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10363.391.1
Unique NamemRNA_D-dudresnayi_contig10363.391.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A482S5D1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5D1_9ARCH)

HSP 1 Score: 208 bits (529), Expect = 1.780e-58
Identity = 109/248 (43.95%), Postives = 163/248 (65.73%), Query Frame = 1
Query:    1 RIPVDLGNLLKYLDTKRTESKLEVTITHVTVKACAAVLTEMSALNGHVMMGDFYKAKNPGVDVSYSLDLTDRESVLLRINDADVKSVDAVSQEIGNLSKKTREDCKRPPRSTLKTQLLDMLAPS-VSEAVDRYLTDLGQLYGINLPALGIEAFPAGVCTVITSPSMEGDTDVEVSMVPNGGVDSYAAPIVVSIGSVRVLPAIDGDRKLSGSPVLNYSISFDNRAASVVECRKFCAKLQKYLRNPTSLE 741
            R PVDL  LL YLD+KR +S+LE+T TH+ VKA   VL EM +LNGHV+ G FY++K  GVDVS SLD++++E+V ++I D D K ++ VS EI    K  R   + P R     + LD L P+ +S  + R L +LG   G++LP +GI  +P GVCT+I SP++  + D++++++ + G     API V++  +R  PAID D+K+S +PVLN+S++    AASV E R+FC +LQ+ L +P  ++
Sbjct:  517 RFPVDLARLLMYLDSKRADSELEMTFTHIVVKAVGLVLLEMPSLNGHVVFGSFYRSKAKGVDVSVSLDVSEKETVAVKIEDVDAKPLECVSDEILGFGKTLRSGGELPNRPDKFFKRLDELLPTFMSTFLKRLLYNLGAKVGLSLPVVGIIPYPLGVCTIINSPNLNKEEDMDLAVISDLG--DACAPITVTMSGMRANPAIDSDKKISAAPVLNFSVAMSTYAASVTEMRRFCGRLQELLNDPNLID 762          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A7S3GWR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWR9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.360e-23
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 RIPVDLGNLLKYLDTKRTESKLEVTITHVTVKACAAVLTEMSALNGHVMMGDFYKAKNPGVDVSYSLD 204
            RIPVDLG LLKYLD+KR+++K+EVTITH+T+KACAAV+TEM  LNGH+MMGDFY A+  GV+VSYSLD
Sbjct:  693 RIPVDLGQLLKYLDSKRSDTKIEVTITHITLKACAAVITEMPTLNGHMMMGDFYPAQTGGVEVSYSLD 760          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A7S2RSY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSY6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.220e-19
Identity = 51/148 (34.46%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  340 KTQLLDMLAPSVSEAVDRYLTDLGQLYGINLPALGIEAFPAGVCTVITSPSMEGDTDVEVSMVPNGGVDSYA-APIVVSIGSVRVLPAIDGDRKLSGSPVLNYSISFDNRAASVVECRKFCAKLQKYLRNPTSLEAAKPAAAEAPVRR 780
            + ++L  L     + +++ L   G   G+++P LG++AFP G CTV+T PS EG  D+EV ++ N G +S   AP+V+++G +RV      D++++  PVL+ S S D R A+V E ++   +LQ+ ++ P  L+       EA +RR
Sbjct:    4 RREILAQLPSMFVDPMEKLLGFCGAQLGLDIPLLGVKAFPFGTCTVVTPPS-EGP-DMEVDIISNSGDNSQPMAPVVITVGGIRVQSGYMKDKQMAARPVLHMSASVDLRCATVYEAKQLFERLQQLMKEPALLDKYISPPTEAKLRR 149          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A7S2FZC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZC9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.820e-13
Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  406 LGQLYGINLPALGIEAFPAGVCTVITSPSMEGDTDVEVSMVPNG-GVDSYAAPIVVSIGSVRVLPAIDGDRKLSGSPVLNYSISFDNRAASVVECRKFCAKLQK 714
            LG   G ++P+LG+  FP G CTVIT PS   D +V+V    +G G     AP+V+++G +RV      D++++  PVL+ S S D R A++ + ++   ++Q+
Sbjct:    5 LGNHLGFSIPSLGVRPFPFGTCTVITPPSEGSDMEVDVVGASDGAGATQPLAPVVITVGGIRVQSGYMKDKQMAARPVLHMSGSVDLRCATMYDAKQLFERVQQ 108          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A7S4W4J1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4J1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-7
Identity = 62/243 (25.51%), Postives = 105/243 (43.21%), Query Frame = 1
Query:   43 TKRTESKLEVTITHVTVKACAAVLTEMSALNGH------VMMGDFYKAKNPGVDVSYSLDLTDRESV-LLRINDADVKSVDAVSQEIGNLSKKTREDCKRPPRSTLKTQLLDMLAPSVSEAVDRYLTDLGQLYGINLPALGIEAFPAGVCTVITSPSMEG-DTDVEVSMVPNGGVDSYAAPIVVSIGSVRVLPAIDGDRKLSGS--PVLNYSISFDNRAASVVECRKFCAKLQKYLRNPTSLE 741
            T +  S +EV++TH+ VKA A  ++++  LN H      + +  FY +    +D+S     + R S  ++ + D +   +  +++ +     + + D      S +   +   +   +S        +  Q                G C V TSP  E  + D+EV+  P+ G     A I V +G +R      G R  S    P+L+ S++ D  AASV  CRKF  K+QK L+ P   E
Sbjct:  119 TTQRRSNVEVSVTHIVVKAVARAMSDLPVLNSHHIYYPPLFINGFYPSDT--IDISVVPGASSRGSNHIVTLQDVERMGIQEIAEAVARRKHRNQSD----GTSNMFWSVFHKVGSIISWIPLSGKRNQSQF---------------GSCIVFTSPDSENSEVDIEVAPAPHVG----GANIAVVVGGIR---GAVGPRSSSAPRYPILSVSVTIDCPAASVGTCRKFVEKVQKLLQFPEVYE 333          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: A0A6V2I6L8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2I6L8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.420e-7
Identity = 62/243 (25.51%), Postives = 105/243 (43.21%), Query Frame = 1
Query:   43 TKRTESKLEVTITHVTVKACAAVLTEMSALNGH------VMMGDFYKAKNPGVDVSYSLDLTDRESV-LLRINDADVKSVDAVSQEIGNLSKKTREDCKRPPRSTLKTQLLDMLAPSVSEAVDRYLTDLGQLYGINLPALGIEAFPAGVCTVITSPSMEG-DTDVEVSMVPNGGVDSYAAPIVVSIGSVRVLPAIDGDRKLSGS--PVLNYSISFDNRAASVVECRKFCAKLQKYLRNPTSLE 741
            T +  S +EV++TH+ VKA A  ++++  LN H      + +  FY +    +D+S     + R S  ++ + D +   +  +++ +     + + D      S +   +   +   +S        +  Q                G C V TSP  E  + D+EV+  P+ G     A I V +G +R      G R  S    P+L+ S++ D  AASV  CRKF  K+QK L+ P   E
Sbjct:  563 TTQRRSNVEVSVTHIVVKAVARAMSDLPVLNSHHIYYPPLFINGFYPSDT--IDISVVPGASSRGSNHIVTLQDVERMGIQEIAEAVARRKHRNQSD----GTSNMFWSVFHKVGSIISWIPLSGKRNQSQF---------------GSCIVFTSPDSENSEVDIEVAPAPHVG----GANIAVVVGGIR---GAVGPRSSSAPRYPILSVSVTIDCPAASVGTCRKFVEKVQKLLQFPEVYE 777          
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Match: UPI001F2F40C1 (2-oxo acid dehydrogenase subunit E2 n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F2F40C1)

HSP 1 Score: 56.6 bits (135), Expect = 9.000e-6
Identity = 57/249 (22.89%), Postives = 104/249 (41.77%), Query Frame = 1
Query:    4 IPVDLGNLLKYLDTKRTESKLEVTITHVTVKACAAVLTEMSALNGHVMMGDFYKAKNPGVDVSYSLDLTDRESV---LLRINDADVKSVDAVSQEIGNLSKKTREDCKRPPRSTL----KTQLLDMLAPSVSEAVDRYLTDLGQLYGINLPALGIEAFPAGVCTVITSPSMEGDTDVEVSMVPNGGVDSYAAPIVVSIGSVRVLPAIDGDRKLSGSPVLNYSISFDNRAASVVECRKFCAKLQKYLRNP 729
            + V +   L Y+D  R  + LE+T+TH+ +KA A  L      N  V +G  Y  +   V    +  +         L R+ DAD KS++ V +E+             P R  +      ++L  L   ++  V R ++ L     ++L   G+     G   V+   ++  D    + ++P   V     P+V++ G+VR +P ++ D ++    V++ + S D+R             LQ  L +P
Sbjct:   35 LTVRMERALTYMDAFRRSTGLELTVTHLVLKALAQALRRCPDANAVVRLGRIYLRQRVSVSALVAGPVAPDGGARWRLARVEDADHKSLEEVVRELA------------PARGDVGAGRAARVLMSLPAPLARGVLRGVSFLAATLNLDLERFGLPRDVMGGAVVVDVGALGLDA-AYLPLIPFARV-----PVVIAPGAVREVPVVEEDGRVGVGRVMSLNASIDHRFIDGYHAGVLARTLQAVLEDP 265          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10363.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A482S5D1_9ARCH1.780e-5843.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3GWR9_9STRA1.360e-2375.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RSY6_9STRA7.220e-1934.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FZC9_9STRA4.820e-1335.58Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4W4J1_9STRA3.380e-725.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2I6L8_9STRA5.420e-725.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI001F2F40C19.000e-622.892-oxo acid dehydrogenase subunit E2 n=1 Tax=Myxoco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10363contigD-dudresnayi_contig10363:8707..9504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog36331.EPrPI00000021125
EggNOG free text desc.2-oxoacid dehydrogenases acyltransferase. Source PGD
EggNOG OGs1MFRZ@121069,COG0508@1,KOG0559@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size798
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.3483536-CDS-D-dudresnayi_contig10363:8706..95041622927535.3483536-CDS-D-dudresnayi_contig10363:8706..9504Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10363 8707..9504 -
1690556797.301947-CDS-D-dudresnayi_contig10363:8706..95041690556797.301947-CDS-D-dudresnayi_contig10363:8706..9504Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10363 8707..9504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10363.391.1prot_D-dudresnayi_contig10363.391.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10363 8707..9504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10363.391.1

>prot_D-dudresnayi_contig10363.391.1 ID=prot_D-dudresnayi_contig10363.391.1|Name=mRNA_D-dudresnayi_contig10363.391.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=266bp
RIPVDLGNLLKYLDTKRTESKLEVTITHVTVKACAAVLTEMSALNGHVMM
GDFYKAKNPGVDVSYSLDLTDRESVLLRINDADVKSVDAVSQEIGNLSKK
TREDCKRPPRSTLKTQLLDMLAPSVSEAVDRYLTDLGQLYGINLPALGIE
AFPAGVCTVITSPSMEGDTDVEVSMVPNGGVDSYAAPIVVSIGSVRVLPA
IDGDRKLSGSPVLNYSISFDNRAASVVECRKFCAKLQKYLRNPTSLEAAK
PAAAEAPVRRKSYLK*
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mRNA from alignment at D-dudresnayi_contig10363:8707..9504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10363.391.1 ID=mRNA_D-dudresnayi_contig10363.391.1|Name=mRNA_D-dudresnayi_contig10363.391.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at D-dudresnayi_contig10363:8707..9504- (Desmarestia dudresnayi DdudBR16 monoicous)
CGCATCCCAGTGGACCTTGGAAACCTGCTGAAGTACCTGGACACGAAGCG AACTGAGAGCAAGCTGGAGGTGACCATCACCCACGTGACGGTCAAGGCCT GCGCCGCTGTGCTCACGGAGATGTCCGCGCTGAACGGCCACGTCATGATG GGCGACTTCTACAAGGCAAAGAATCCCGGTGTGGACGTCAGCTATTCGCT GGACCTCACTGACCGCGAGTCCGTGCTGCTGAGGATCAACGACGCTGATG TGAAGTCCGTCGACGCGGTGTCTCAGGAGATCGGAAACCTCAGCAAGAAG ACCCGCGAAGACTGCAAGCGCCCCCCGCGCTCTACTCTGAAGACCCAGCT GCTGGACATGCTGGCCCCATCCGTCAGCGAGGCAGTGGACCGGTACCTCA CCGACCTGGGCCAGCTGTACGGCATCAACCTGCCCGCCCTGGGCATCGAG GCCTTCCCAGCAGGCGTGTGCACGGTGATCACCTCGCCCAGCATGGAGGG CGACACAGACGTGGAGGTCAGCATGGTGCCCAACGGCGGGGTGGACTCCT ACGCCGCGCCCATTGTGGTCAGTATTGGCTCAGTGCGCGTGCTCCCCGCC ATCGACGGTGACCGCAAGCTGTCCGGCTCCCCGGTACTGAACTACTCCAT CTCGTTCGACAACCGCGCCGCCTCAGTGGTGGAGTGCCGGAAGTTCTGCG CCAAGCTGCAGAAGTACTTACGCAACCCCACCTCCCTCGAGGCCGCCAAG CCCGCCGCAGCTGAGGCGCCCGTGCGGAGGAAGTCGTATCTCAAATAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10363:8707..9504-

>mRNA_D-dudresnayi_contig10363.391.1 ID=mRNA_D-dudresnayi_contig10363.391.1|Name=mRNA_D-dudresnayi_contig10363.391.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at D-dudresnayi_contig10363:8707..9504- (Desmarestia dudresnayi DdudBR16 monoicous)
CGCATCCCAGTGGACCTTGGAAACCTGCTGAAGTACCTGGACACGAAGCG
AACTGAGAGCAAGCTGGAGGTGACCATCACCCACGTGACGGTCAAGGCCT
GCGCCGCTGTGCTCACGGAGATGTCCGCGCTGAACGGCCACGTCATGATG
GGCGACTTCTACAAGGCAAAGAATCCCGGTGTGGACGTCAGCTATTCGCT
GGACCTCACTGACCGCGAGTCCGTGCTGCTGAGGATCAACGACGCTGATG
TGAAGTCCGTCGACGCGGTGTCTCAGGAGATCGGAAACCTCAGCAAGAAG
ACCCGCGAAGACTGCAAGCGCCCCCCGCGCTCTACTCTGAAGACCCAGCT
GCTGGACATGCTGGCCCCATCCGTCAGCGAGGCAGTGGACCGGTACCTCA
CCGACCTGGGCCAGCTGTACGGCATCAACCTGCCCGCCCTGGGCATCGAG
GCCTTCCCAGCAGGCGTGTGCACGGTGATCACCTCGCCCAGCATGGAGGG
CGACACAGACGTGGAGGTCAGCATGGTGCCCAACGGCGGGGTGGACTCCT
ACGCCGCGCCCATTGTGGTCAGTATTGGCTCAGTGCGCGTGCTCCCCGCC
ATCGACGGTGACCGCAAGCTGTCCGGCTCCCCGGTACTGAACTACTCCAT
CTCGTTCGACAACCGCGCCGCCTCAGTGGTGGAGTGCCGGAAGTTCTGCG
CCAAGCTGCAGAAGTACTTACGCAACCCCACCTCCCTCGAGGCCGCCAAG
CCCGCCGCAGCTGAGGCGCCCGTGCGGAGGAAGTCGTATCTCAAATAGCG
CATCCCAGTGGACCTTGGAAACCTGCTGAAGTACCTGGACACGAAGCGAA
CTGAGAGCAAGCTGGAGGTGACCATCACCCACGTGACGGTCAAGGCCTGC
GCCGCTGTGCTCACGGAGATGTCCGCGCTGAACGGCCACGTCATGATGGG
CGACTTCTACAAGGCAAAGAATCCCGGTGTGGACGTCAGCTATTCGCTGG
ACCTCACTGACCGCGAGTCCGTGCTGCTGAGGATCAACGACGCTGATGTG
AAGTCCGTCGACGCGGTGTCTCAGGAGATCGGAAACCTCAGCAAGAAGAC
CCGCGAAGACTGCAAGCGCCCCCCGCGCTCTACTCTGAAGACCCAGCTGC
TGGACATGCTGGCCCCATCCGTCAGCGAGGCAGTGGACCGGTACCTCACC
GACCTGGGCCAGCTGTACGGCATCAACCTGCCCGCCCTGGGCATCGAGGC
CTTCCCAGCAGGCGTGTGCACGGTGATCACCTCGCCCAGCATGGAGGGCG
ACACAGACGTGGAGGTCAGCATGGTGCCCAACGGCGGGGTGGACTCCTAC
GCCGCGCCCATTGTGGTCAGTATTGGCTCAGTGCGCGTGCTCCCCGCCAT
CGACGGTGACCGCAAGCTGTCCGGCTCCCCGGTACTGAACTACTCCATCT
CGTTCGACAACCGCGCCGCCTCAGTGGTGGAGTGCCGGAAGTTCTGCGCC
AAGCTGCAGAAGTACTTACGCAACCCCACCTCCCTCGAGGCCGCCAAGCC
CGCCGCAGCTGAGGCGCCCGTGCGGAGGAAGTCGTATCTCAAATAG
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