mRNA_D-dudresnayi_contig10324.346.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10324.346.1
Unique NamemRNA_D-dudresnayi_contig10324.346.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10324.346.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 8.480e-27
Identity = 84/180 (46.67%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:    1 GIAVDAVIEAIRQTFRSPSVLSGCFNILSPL-GRSGHTRCPVVGVSGGSNAAVEPTLTRVDAEGLEAVYVELMGMGPRVVYELCSSIEEGIEV----------SAKS----PSSSTM-----AAGVSFLLKYWQSPTIRMPRKLYKADPQRPGTCRSMAL--ICDSVLKLRGHARWRLMR 474
            G    AV+EA+RQTF SPSVLS CFNI +P   R G+      G   G   A      RVDA GLEAVY  L G+GPRVV  L SSIEEG+            S+KS    PSS+       AAG SFLLKYWQ  T        +   + P T + MA+  IC +VL L+GHARW LMR
Sbjct:  951 GAEEAAVLEAVRQTFASPSVLSACFNIEAPAEARHGNLGRTQTGEGRGQGTA----FPRVDAAGLEAVYAGLAGLGPRVVDTLWSSIEEGMAAVREAQQSPLTSSKSRCSRPSSNPAVPGLEAAGASFLLKYWQGSTFS------RDVGESPDTGKDMAMERICKTVLGLKGHARWWLMR 1120
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BLAST of mRNA_D-dudresnayi_contig10324.346.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.230e-11
Identity = 46/96 (47.92%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 GIAVDAVIEAIRQTFRSPSVLSGCFNILSPL-GRSGHTRCPVVGVSGGSNAAVEPTLTRVDAEGLEAVYVELMGMGPRVVYELCSSIEEGIEVSAK 285
            G    AV+EA+RQTF SPSVLS CFNI +P   R G+      G   G   A      RVDA GLEAVY  L G+GPRVV         GI + AK
Sbjct:  525 GAEEAAVLEAVRQTFASPSVLSACFNIEAPAEARHGNLGRKQTGEGRGQGTA----FPRVDAAGLEAVYAGLAGLGPRVVENTVVVDRGGIHLLAK 616
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10324.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Y9_9PHAE8.480e-2746.67HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI2.230e-1147.92HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10324contigD-dudresnayi_contig10324:3073..5531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size488
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10324.346.1prot_D-dudresnayi_contig10324.346.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10324 3073..5531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.6182878-CDS-D-dudresnayi_contig10324:3072..30991622927530.6182878-CDS-D-dudresnayi_contig10324:3072..3099Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 3073..3099 +
1690556795.0453756-CDS-D-dudresnayi_contig10324:3072..30991690556795.0453756-CDS-D-dudresnayi_contig10324:3072..3099Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 3073..3099 +
1622927530.6337807-CDS-D-dudresnayi_contig10324:3978..42151622927530.6337807-CDS-D-dudresnayi_contig10324:3978..4215Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 3979..4215 +
1690556795.0584998-CDS-D-dudresnayi_contig10324:3978..42151690556795.0584998-CDS-D-dudresnayi_contig10324:3978..4215Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 3979..4215 +
1622927530.6482947-CDS-D-dudresnayi_contig10324:5309..55311622927530.6482947-CDS-D-dudresnayi_contig10324:5309..5531Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 5310..5531 +
1690556795.0657785-CDS-D-dudresnayi_contig10324:5309..55311690556795.0657785-CDS-D-dudresnayi_contig10324:5309..5531Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 5310..5531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10324.346.1

>prot_D-dudresnayi_contig10324.346.1 ID=prot_D-dudresnayi_contig10324.346.1|Name=mRNA_D-dudresnayi_contig10324.346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=162bp
GIAVDAVIEAIRQTFRSPSVLSGCFNILSPLGRSGHTRCPVVGVSGGSNA
AVEPTLTRVDAEGLEAVYVELMGMGPRVVYELCSSIEEGIEVSAKSPSSS
TMAAGVSFLLKYWQSPTIRMPRKLYKADPQRPGTCRSMALICDSVLKLRG
HARWRLMRRCL*
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mRNA from alignment at D-dudresnayi_contig10324:3073..5531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10324.346.1 ID=mRNA_D-dudresnayi_contig10324.346.1|Name=mRNA_D-dudresnayi_contig10324.346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2459bp|location=Sequence derived from alignment at D-dudresnayi_contig10324:3073..5531+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAATCGCTGTAGATGCCGTGATTGAGGTGGGTGAGGAGTCCGCTGGGGG
GAGGGGGGGGGAGGGGGGCGTAAGGTGCTTGAAAGGACACGAAAAGGAAA
AGAAAACAAAAAAATATTGACGCAAGTCCTGGTCATGGAATCAGTTTTTT
CCCTTGAAGCCTCATATCTTTTTGTTTGCGTCATGCGAAGTCGGTTTCAC
TTGCGTAGGCCGGGGCTTTCTCTGTCTATTATCGTAAGTGGAACTTTTCT
GTGTCGTGCTCCTTCATCGCGGGAAGCGCAAGAGCGATAAAGAGGAAATT
GCTATAGGGAAAAGACCGACGAGATTCGTATGGGAATGCCGAACCCAAGG
TATTGTTGATGTTGTCCTCACATTAAAAATCGTCCTTTCTGCCGACGACA
AAGTCCAGTAGCGTACTCAGAGTCTGTGCTGATTCTTCCATCCAAGAGAC
ACACGAAATTCCGTGCTCACAAGCTACCAACTAGCACCAAAATCGCAAAA
TTGAACCAAAGGAACGGGAAAAATGAACAGAGCAATACAAGAAAAAAATG
AGTGAATGTGCAGGATAAAAACATGAAATATATACCGAGGCAAGCAAGCA
ACGGGGGCGGAGAAGAGAAGACCCCTAGCTGTGATAGCAGACTGCTCGGA
ACGGTGCCCCTGAGCGATGACTTCCCATGGGAGCTGAGCTGGGAGAATTG
AAGTGAACTGATACCATTTATACAACTATAGATTGAGTTTTGTGACCACG
GGCAAGATTGTTTTAGATGAGCTAATGTGAGAAACAAAAATAATGGGCGT
TACGTTTTTTGTTTGCCTTGAAATCAACACAAACATGGGATAACACCCTC
TTCCCCCCCGCCGCCCCCACCGCCACCACCAATAACGAACGCGCACCCAT
ATATAGGCGATCAGACAAACGTTCAGGTCTCCGTCGGTGCTAAGCGGCTG
CTTCAATATTCTGTCACCGTTAGGGAGAAGCGGCCACACTAGGTGTCCTG
TTGTCGGTGTTTCTGGTGGGTCCAACGCAGCCGTGGAGCCAACGTTGACT
CGCGTGGATGCCGAGGGGCTTGAGGCCGTGTATGTTGAGCTCATGGGGAT
GGGACCGCGAGTGGTGTACGAGTTGTGTTCGTCCATCGAAGAGGTACTCG
TACGGCAAGGGCTTCGGCGTCTGCTTCTTGTTTTTCTTGATTTTTTTGTA
CCCTTTCTACACCTTGTACCCTTTTTTACTTTCTTTTTGCCCTATCGAGG
CCAACTTTTACATGAGGAATTGACAACCCGGCCGCACAAAAACAATAACA
ATACCATGCATACATGGAACGCCCCACATCCTAACTAAAGTTTGTGAGAT
GTTTTTTGACGAGGATTGAATAACCCAGCCGAACAACAAAAAGAAAAACT
ACATAGACCACCCCGAGTAGATTTTATGCGAAATTTTTAACACGGCTAAA
CATCCCGGCCGAACAAAAATAATCCCATCCATACATGGAACGCCCCGAAT
AGATGTTGTGAAACCTATTTACGAGGATCGAACAAACCGGCTGAATACGA
AAAATATGCATCCACACATGGAACTCCCCGAAGATATTTTAGTACAGTGG
TACCCTCCCCGGATGCTTATGTTTTGGGATTTGTTGTCGCGTCATTTTAT
GGGCAAGAAAAAATCTATCGAGAGGGTTAAATGTGTGCATGGGGGGGGCG
TGGTTTGTTTGTTGTGGTTGTCTCTGGCATAAAGCCCAGACTGCACGTGT
AGCCACGTGTATCCACGTGTAACACGAAAATCTTGGGGAGGCCTCTAGTG
CGATGGCACTGATAGGATGTGTGTACACATGCTTGTATATATTGTTTCCT
CCTTGGCATGTGCGTCATTGTGTAATTGTTTGGTTCAGTTTTTTTTGTCG
TTACCATTTTTTCTCTCGCCCGACAATGCTGTCTATTTTGCCTTGTGACC
ACAGGCTTACTTCGTATGATCGAATAGGCCAATCAGTTGACAGGTATTGA
AAGTAGATCCATCAATTGAGTAATCAATGAGCCAATAAACCAACCAACTG
ATCTATCAGTCAAACAATCAACTAATCATTCAACCAACCAACCAACAAAC
AACATAATCAACTAGCCAACCATCCAACCAACGAACCGAAAAATCAACCA
ATCAACCACAAAATCACCCAACGAACCGACCGACCACCCAACCAGCCAAT
CAACCAACCCCGTACTTCTGCTTCACAAAACATGCAGGGTATTGAGGTGT
CTGCCAAGTCGCCGTCCTCCTCCACCATGGCGGCGGGCGTGTCCTTCCTG
CTAAAATACTGGCAGAGCCCCACCATACGAATGCCTCGAAAGCTGTACAA
AGCCGACCCACAACGCCCCGGCACGTGCCGTTCCATGGCCCTTATCTGCG
ACTCGGTGCTCAAGCTCAGGGGGCACGCACGTTGGCGTTTAATGCGAAGG
TGTCTGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10324:3073..5531+

>mRNA_D-dudresnayi_contig10324.346.1 ID=mRNA_D-dudresnayi_contig10324.346.1|Name=mRNA_D-dudresnayi_contig10324.346.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at D-dudresnayi_contig10324:3073..5531+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAATCGCTGTAGATGCCGTGATTGAGGGAATCGCTGTAGATGCCGTGAT
TGAGGCGATCAGACAAACGTTCAGGTCTCCGTCGGTGCTAAGCGGCTGCT
TCAATATTCTGTCACCGTTAGGGAGAAGCGGCCACACTAGGTGTCCTGTT
GTCGGTGTTTCTGGTGGGTCCAACGCAGCCGTGGAGCCAACGTTGACTCG
CGTGGATGCCGAGGGGCTTGAGGCCGTGTATGTTGAGCTCATGGGGATGG
GACCGCGAGTGGTGTACGAGTTGTGTTCGTCCATCGAAGAGGCGATCAGA
CAAACGTTCAGGTCTCCGTCGGTGCTAAGCGGCTGCTTCAATATTCTGTC
ACCGTTAGGGAGAAGCGGCCACACTAGGTGTCCTGTTGTCGGTGTTTCTG
GTGGGTCCAACGCAGCCGTGGAGCCAACGTTGACTCGCGTGGATGCCGAG
GGGCTTGAGGCCGTGTATGTTGAGCTCATGGGGATGGGACCGCGAGTGGT
GTACGAGTTGTGTTCGTCCATCGAAGAGGGTATTGAGGTGTCTGCCAAGT
CGCCGTCCTCCTCCACCATGGCGGCGGGCGTGTCCTTCCTGCTAAAATAC
TGGCAGAGCCCCACCATACGAATGCCTCGAAAGCTGTACAAAGCCGACCC
ACAACGCCCCGGCACGTGCCGTTCCATGGCCCTTATCTGCGACTCGGTGC
TCAAGCTCAGGGGGCACGCACGTTGGCGTTTAATGCGAAGGTGTCTGTAG
GGTATTGAGGTGTCTGCCAAGTCGCCGTCCTCCTCCACCATGGCGGCGGG
CGTGTCCTTCCTGCTAAAATACTGGCAGAGCCCCACCATACGAATGCCTC
GAAAGCTGTACAAAGCCGACCCACAACGCCCCGGCACGTGCCGTTCCATG
GCCCTTATCTGCGACTCGGTGCTCAAGCTCAGGGGGCACGCACGTTGGCG
TTTAATGCGAAGGTGTCTGTAG
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