mRNA_D-dudresnayi_contig10319.344.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10319.344.1
Unique NamemRNA_D-dudresnayi_contig10319.344.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: D8LCF8_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.850e-60
Identity = 98/108 (90.74%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPPKYKKLTDDGMAGLAATVSC 324
            +YEALEAPLL VEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEA+RF+RVPPKY KLTD+GM GL   VSC
Sbjct:  285 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSC 392
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: D8LFI2_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI2_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 5.350e-59
Identity = 98/108 (90.74%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPPKYKKLTDDGMAGLAATVSC 324
            +YEALEAPLL VEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEA+RF+RVPPKY KLTD+GM GL   VSC
Sbjct:  436 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSC 543
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A7S3XKM5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM5_HETAK)

HSP 1 Score: 141 bits (356), Expect = 1.090e-39
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPP---KYKKLTDDGMAGLAATVS 321
            LY  L APLLGV+ERLDVLLH+KWTV EFDC LTRDI ELVDREADLL+RGRGE +L  LR+R+ NLFLRF ETP+FNPEA RF+++PP   +  +L  DG +   A +S
Sbjct:  118 LYRGLTAPLLGVDERLDVLLHVKWTVKEFDCPLTRDIVELVDREADLLNRGRGEKALEGLRRRVANLFLRFVETPEFNPEAARFLKIPPPPNQQPELEYDGSSAGPALMS 227
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A7S2UXW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.290e-36
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVP 264
            LYE L   L+  +ERLD+LLH+KWTV EF+C LTRDI EL+DREADLL+RGR E SL  LRQRI NLFLRF ETP+FNPEATRF+++P
Sbjct:   49 LYEGLSNSLVSTDERLDILLHVKWTVKEFECPLTRDIVELIDREADLLNRGRSEKSLEGLRQRITNLFLRFIETPEFNPEATRFLKMP 136
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A7S0PVG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PVG3_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 1.390e-35
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVP 264
            LY  L  PLL V+ERLDVLLH+KWTV EFDC LTRDI EL+DREAD+L+RGR ++SL  LR+R+ NLFL+F ETP+FNPEA RF +VP
Sbjct:   65 LYNGLRLPLLSVDERLDVLLHVKWTVKEFDCNLTRDIVELIDREADMLNRGRSDSSLGGLRKRLANLFLQFVETPEFNPEAARFQKVP 152
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A7S2J4U9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J4U9_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 3.760e-33
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVP 264
            LY  L  PLL ++ERLDVLLH+KWTV EFDC LTRD+ EL+DREAD+L+RGR EASL  LR+R+ NLFL+F ETP+FNPEA RF +VP
Sbjct:  386 LYNGLRLPLLTIDERLDVLLHVKWTVKEFDCNLTRDVVELIDREADMLNRGRSEASLTGLRKRLANLFLQFIETPEFNPEAARFQKVP 473
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A7S1GAU3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAU3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.910e-33
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVP------PKYKKLTD 288
            LY  L  P+L V+ERLDVLLH+KWTV EFDC LTR++ +L+DREADLL+RGR E SL  LR+RI NLFL+F ETP+FNPEA RF +VP      P  + +TD
Sbjct:  266 LYSGLNLPMLTVDERLDVLLHVKWTVKEFDCLLTREVVDLIDREADLLNRGRSEKSLEGLRRRISNLFLQFIETPEFNPEAARFQKVPRDLSTRPSVRPVTD 367
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A8J8SW50_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SW50_HALGN)

HSP 1 Score: 127 bits (320), Expect = 6.970e-33
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPPKYKKLT 285
            LY  L  P L  +ERLDVLLH KWTV EFDC LTR+I +L+DREAD+L+RGRGEASL  LR+R+ NLFL+F ETP+FNPEA RF +VP +  + T
Sbjct:  330 LYNGLRLPFLSTDERLDVLLHTKWTVKEFDCNLTREIVDLIDREADMLNRGRGEASLEGLRKRLSNLFLQFIETPEFNPEAARFQKVPRELLQQT 424
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A8J2EPI9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EPI9_9DINO)

HSP 1 Score: 128 bits (322), Expect = 1.220e-32
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVP 264
            LY  L  PLL ++ERLDVLLH+KWTV EFDC LTRDI +L+DREAD+L+RGR E+S   LR+R+ NLFL+F ETPDFNPEA+RF +VP
Sbjct:  431 LYNGLNLPLLSIDERLDVLLHVKWTVKEFDCNLTRDIVDLIDREADMLNRGRSESSFAGLRKRLANLFLQFVETPDFNPEASRFQQVP 518
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BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Match: A0A836CKY2_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.820e-32
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPPKYKKL 282
            LY AL APL+G  ERLDVLLH+KW V  F+CRLTR++ EL+DREADLLSRGR   S+  LR R   LFLRF ETPDFNPEA+RF+R PP ++ L
Sbjct:  298 LYRALAAPLVGAAERLDVLLHVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAPPSHQHL 391
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10319.344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF8_ECTSI1.850e-6090.74Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
D8LFI2_ECTSI5.350e-5990.74MFS domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A7S3XKM5_HETAK1.090e-3965.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXW3_9STRA9.290e-3670.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0PVG3_9EUKA1.390e-3569.32Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2J4U9_9EUKA3.760e-3369.32Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S1GAU3_9STRA5.910e-3361.76Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J8SW50_HALGN6.970e-3364.21Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A8J2EPI9_9DINO1.220e-3268.18Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A836CKY2_9STRA1.820e-3265.96Flagellar associated protein n=1 Tax=Tribonema min... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10319contigD-dudresnayi_contig10319:3774..4100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4e-48
Seed eggNOG ortholog2880.D8LCF8
Preferred nameIQUB
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
EggNOG free text desc.smoothened signaling pathway
EggNOG OGs28JBT@1,2QRQT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIQ calmodulin-binding motif family protein
Ec32 orthologEc-00_007120.1
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.397623-CDS-D-dudresnayi_contig10319:3773..41001622927530.397623-CDS-D-dudresnayi_contig10319:3773..4100Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10319 3774..4100 -
1690556794.9292204-CDS-D-dudresnayi_contig10319:3773..41001690556794.9292204-CDS-D-dudresnayi_contig10319:3773..4100Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10319 3774..4100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10319.344.1prot_D-dudresnayi_contig10319.344.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10319 3774..4100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10319.344.1

>prot_D-dudresnayi_contig10319.344.1 ID=prot_D-dudresnayi_contig10319.344.1|Name=mRNA_D-dudresnayi_contig10319.344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=109bp
LYEALEAPLLGVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSR
GRGEASLRPLRQRIRNLFLRFAETPDFNPEATRFVRVPPKYKKLTDDGMA
GLAATVSC*
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mRNA from alignment at D-dudresnayi_contig10319:3774..4100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10319.344.1 ID=mRNA_D-dudresnayi_contig10319.344.1|Name=mRNA_D-dudresnayi_contig10319.344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at D-dudresnayi_contig10319:3774..4100- (Desmarestia dudresnayi DdudBR16 monoicous)
TTGTACGAAGCCCTCGAGGCCCCGCTTCTGGGCGTTGAAGAACGCCTTGA
CGTCTTGCTGCACCTTAAGTGGACCGTCAGCGAGTTCGATTGCCGCCTCA
CGCGGGACATCGCGGAGCTCGTAGACAGGGAGGCGGATCTGTTGAGCCGG
GGACGGGGGGAAGCCAGCCTGCGTCCCCTGCGCCAGCGCATACGGAACCT
GTTTCTACGCTTCGCGGAGACGCCGGACTTCAACCCGGAAGCCACGCGCT
TCGTGCGCGTGCCGCCCAAGTACAAGAAGCTTACCGACGACGGCATGGCG
GGATTGGCAGCTACCGTTTCGTGTTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10319:3774..4100-

>mRNA_D-dudresnayi_contig10319.344.1 ID=mRNA_D-dudresnayi_contig10319.344.1|Name=mRNA_D-dudresnayi_contig10319.344.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at D-dudresnayi_contig10319:3774..4100- (Desmarestia dudresnayi DdudBR16 monoicous)
TTGTACGAAGCCCTCGAGGCCCCGCTTCTGGGCGTTGAAGAACGCCTTGA
CGTCTTGCTGCACCTTAAGTGGACCGTCAGCGAGTTCGATTGCCGCCTCA
CGCGGGACATCGCGGAGCTCGTAGACAGGGAGGCGGATCTGTTGAGCCGG
GGACGGGGGGAAGCCAGCCTGCGTCCCCTGCGCCAGCGCATACGGAACCT
GTTTCTACGCTTCGCGGAGACGCCGGACTTCAACCCGGAAGCCACGCGCT
TCGTGCGCGTGCCGCCCAAGTACAAGAAGCTTACCGACGACGGCATGGCG
GGATTGGCAGCTACCGTTTCGTGTTGATTGTACGAAGCCCTCGAGGCCCC
GCTTCTGGGCGTTGAAGAACGCCTTGACGTCTTGCTGCACCTTAAGTGGA
CCGTCAGCGAGTTCGATTGCCGCCTCACGCGGGACATCGCGGAGCTCGTA
GACAGGGAGGCGGATCTGTTGAGCCGGGGACGGGGGGAAGCCAGCCTGCG
TCCCCTGCGCCAGCGCATACGGAACCTGTTTCTACGCTTCGCGGAGACGC
CGGACTTCAACCCGGAAGCCACGCGCTTCGTGCGCGTGCCGCCCAAGTAC
AAGAAGCTTACCGACGACGGCATGGCGGGATTGGCAGCTACCGTTTCGTG
TTGA
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