mRNA_D-dudresnayi_contig10307.336.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10307.336.1
Unique NamemRNA_D-dudresnayi_contig10307.336.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: A0A482S7Y5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7Y5_9ARCH)

HSP 1 Score: 136 bits (342), Expect = 3.280e-38
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  128 LTKFNREWNAKLDKKRETEFENEKSVRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLIDAGE-GDSKGSDTARMRKLFIQLKNEPLEVTRGA 466
             +KFNREW  KLD KR  E+E+EK++RA A+E+ A W  Q++I+  AKKD NRSE+Q+  E + SE++NLK W+RV KL+DA + GD KGSDT RMRKLFI LKNEPLEVTR A
Sbjct:    5 FSKFNREWQVKLDAKRAAEYEHEKAIRAKAQEELAAWKNQKEIRFNAKKDKNRSEQQVFVETVESEAQNLKVWDRVGKLVDANDSGDRKGSDTTRMRKLFIHLKNEPLEVTRAA 118          
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: A0A812V5R7_SYMMI (Clathrin light chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5R7_SYMMI)

HSP 1 Score: 120 bits (302), Expect = 9.740e-32
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 2
Query:   17 EFEDIPASEEEEVVXXXXXXXXXSVNILPEPESTEDALTKFNREWNAKLDKKRETEFENEKSVRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLIDAG---EGDSKGSDTARMRKLFIQLKNEPLEVTRGA 466
            EF D+P +E+EEV              +PEPE  EDAL+KFNREWN +L++K+  E   E+  +A A E+ A +  QR  ++ AKK+ NRSEEQ+  EQL S+ +    W+RVSKLI+AG     D   +D +RMRKLFI LKNEPLE TRGA
Sbjct:    5 EFVDMPEAEDEEVETTESYEPMG----MPEPE-VEDALSKFNREWNERLEEKKRKEDAAEEEAKATAAEELANYLAQRQTRMSAKKEVNRSEEQVLLEQLESDLDGANVWDRVSKLIEAGVDVPDDPDRADVSRMRKLFIHLKNEPLETTRGA 152          
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: F0WK74_9STRA (Clathrin light chain n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WK74_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.580e-7
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  119 EDALTKFNREWNAKLDKK--RETEFENEKSVRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLIDAGEGDSKGS--------------------------DTARMRKLFIQLKNEPLEVTRG 463
            +D L  +NREW  KL  K   +++   E   +AAA+ D  ++  +R+  L++KK  NR+ EQ   E+L ++  N   WERV  L+D  +  S  S                          D +RMR++F+QLK EPLE+TR 
Sbjct:   69 DDELAAYNREWEEKLAMKASEQSQIAIECKDKAAADMD--QFIAEREHLLESKKTINRAHEQAMLEKLEADLLNENPWERVVTLVDMKQPKSSKSENTKKSDKEKSSTKAFSKSTTQEIPTDVSRMRQIFLQLKREPLEMTRS 209          
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: A0A2R5G7Q9_9STRA (Clathrin light chain n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7Q9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.320e-6
Identity = 36/120 (30.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  104 EPESTEDALTKFNREWNAKLDKKRETEFENEKS-VRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLID-----AGEGDSKGSDTARMRKLFIQLKNEP 445
            +P++ + AL  F R+W A+L +K + + E ++S ++  A+++  K+  ++   LK+++ +NR +E+   E +         WER+  L+D       +G+    D AR+RK+F+QLKN+P
Sbjct:  116 DPDADDAALRAFQRKWEAELSEK-DAKMETQRSEMKERAQQELEKFKAEKADALKSRQKTNREQEEHFLEDINEALTAENPWERILSLVDISKSSGAKGEGGERDLARLRKIFVQLKNDP 234          
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: A0A485KA22_9STRA (Clathrin light chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA22_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.710e-5
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  125 ALTKFNREWNAKLDKKRETEFENEK-------SVRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLID------------AGEGDSKGS------------DTARMRKLFIQLKNEPLEVTRG 463
            A  +F  E++ K+    ET  E+EK         +AA E+ K +  + RD KL+A    NR++EQ T E+L ++  N   WERV  L++            A E  ++G             D  RM++LF+QLK+EPL++TR 
Sbjct:   15 AYVEFQAEYDRKI---AETALEHEKVGDENRVKAQAALEQFKTERQRLRDAKLQA----NRTQEQATVEKLNADLTNDNPWERVVSLVELESLKSKNAKRLAAEAKARGEKIAADKADLEEIDLTRMKQLFVQLKSEPLDLTRA 151          
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Match: A0A1W0A9S3_9STRA (Clathrin light chain n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9S3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.410e-5
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  125 ALTKFNREWNAKLDKKRETEFENEKSV---RAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQLVSESENLKTWERVSKLIDA-----------GEGDSKGS------------DTARMRKLFIQLKNEPLEVTRG 463
            A  +F  E+  K+   +ET  E+EK     RA A E   ++  +R+   +AK ++NRS EQ T E+L ++  N   WERV  L++             E  ++G             D  RM+++F+QLK EPLE+TRG
Sbjct:   12 AYAEFQAEYERKI---QETALEHEKIAEENRARALEAMEQFKAERERLREAKIEANRSLEQATIEKLDADLVNENPWERVVSLVELESIKTKAAKRLAEARARGEISEEKKVELEEVDVNRMKQIFLQLKQEPLELTRG 147          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10307.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A482S7Y5_9ARCH3.280e-3861.40Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812V5R7_SYMMI9.740e-3249.02Clathrin light chain n=1 Tax=Symbiodinium microadr... [more]
F0WK74_9STRA9.580e-732.87Clathrin light chain n=1 Tax=Albugo laibachii Nc14... [more]
A0A2R5G7Q9_9STRA4.320e-630.00Clathrin light chain n=1 Tax=Hondaea fermentalgian... [more]
A0A485KA22_9STRA1.710e-532.64Clathrin light chain n=1 Tax=Aphanomyces stellatus... [more]
A0A1W0A9S3_9STRA5.410e-533.09Clathrin light chain n=1 Tax=Thraustotheca clavata... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10307contigD-dudresnayi_contig10307:8912..9517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog2880.D7G9H3
Preferred nameCLC
EggNOG free text desc.Clathrin light chain
EggNOG OGs2CBIT@1,2S8RD@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClathrin light chain
Ec32 orthologEc-28_000910.1
Exons2
Model size527
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10307.336.1prot_D-dudresnayi_contig10307.336.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10307 8925..9471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.7427592-UTR-D-dudresnayi_contig10307:8911..89241622927529.7427592-UTR-D-dudresnayi_contig10307:8911..8924Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 8912..8924 +
1690556794.5666616-UTR-D-dudresnayi_contig10307:8911..89241690556794.5666616-UTR-D-dudresnayi_contig10307:8911..8924Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 8912..8924 +
1622927529.78843-UTR-D-dudresnayi_contig10307:9471..95171622927529.78843-UTR-D-dudresnayi_contig10307:9471..9517Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 9472..9517 +
1690556794.6139884-UTR-D-dudresnayi_contig10307:9471..95171690556794.6139884-UTR-D-dudresnayi_contig10307:9471..9517Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 9472..9517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.7616322-CDS-D-dudresnayi_contig10307:8924..90431622927529.7616322-CDS-D-dudresnayi_contig10307:8924..9043Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 8925..9043 +
1690556794.5846162-CDS-D-dudresnayi_contig10307:8924..90431690556794.5846162-CDS-D-dudresnayi_contig10307:8924..9043Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 8925..9043 +
1622927529.7750218-CDS-D-dudresnayi_contig10307:9122..94711622927529.7750218-CDS-D-dudresnayi_contig10307:9122..9471Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 9123..9471 +
1690556794.5987232-CDS-D-dudresnayi_contig10307:9122..94711690556794.5987232-CDS-D-dudresnayi_contig10307:9122..9471Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 9123..9471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10307.336.1

>prot_D-dudresnayi_contig10307.336.1 ID=prot_D-dudresnayi_contig10307.336.1|Name=mRNA_D-dudresnayi_contig10307.336.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=156bp
MEFEDIPASEEEEVVVAEPEPEPESVNILPEPESTEDALTKFNREWNAKL
DKKRETEFENEKSVRAAAEEDKAKWTQQRDIKLKAKKDSNRSEEQITQEQ
LVSESENLKTWERVSKLIDAGEGDSKGSDTARMRKLFIQLKNEPLEVTRG
AIEAK*
back to top

mRNA from alignment at D-dudresnayi_contig10307:8912..9517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10307.336.1 ID=mRNA_D-dudresnayi_contig10307.336.1|Name=mRNA_D-dudresnayi_contig10307.336.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at D-dudresnayi_contig10307:8912..9517+ (Desmarestia dudresnayi DdudBR16 monoicous)
AATATAAAATCAAATGGAATTTGAAGATATCCCCGCATCTGAGGAGGAAG AAGTTGTTGTTGCAGAGCCTGAACCTGAGCCTGAGTCTGTGAACATTCTG CCTGAGCCAGAATCAACCGAGGATGCTCTAACGTGAGTTTATAGGAACCC TCTTTGATTTAAACATGTTAATTTATTATCTTATCACTATTTATTATGAA TATTATATTAGTAAATTTAACAGAGAATGGAATGCCAAGCTCGATAAGAA AAGAGAGACTGAATTTGAAAATGAAAAGTCCGTTAGAGCTGCCGCAGAGG AGGACAAGGCCAAGTGGACACAACAGAGAGATATTAAGCTAAAGGCAAAG AAAGACAGCAACAGAAGTGAGGAGCAGATTACACAGGAGCAGCTTGTGTC TGAATCTGAGAACCTCAAGACCTGGGAGCGTGTATCAAAGCTGATCGATG CTGGTGAAGGTGATTCCAAGGGTTCTGACACTGCTAGAATGCGCAAGCTG TTTATTCAGCTCAAGAATGAGCCGCTTGAGGTCACACGTGGAGCTATTGA GGCCAAATAAACATTTTCAATTATCTCTAATAAGTGGATGACACACTAAT TAAATA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10307:8912..9517+

>mRNA_D-dudresnayi_contig10307.336.1 ID=mRNA_D-dudresnayi_contig10307.336.1|Name=mRNA_D-dudresnayi_contig10307.336.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at D-dudresnayi_contig10307:8912..9517+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAATTTGAAGATATCCCCGCATCTGAGGAGGAAGAAGTTGTTGTTGC
AGAGCCTGAACCTGAGCCTGAGTCTGTGAACATTCTGCCTGAGCCAGAAT
CAACCGAGGATGCTCTAACATGGAATTTGAAGATATCCCCGCATCTGAGG
AGGAAGAAGTTGTTGTTGCAGAGCCTGAACCTGAGCCTGAGTCTGTGAAC
ATTCTGCCTGAGCCAGAATCAACCGAGGATGCTCTAACTAAATTTAACAG
AGAATGGAATGCCAAGCTCGATAAGAAAAGAGAGACTGAATTTGAAAATG
AAAAGTCCGTTAGAGCTGCCGCAGAGGAGGACAAGGCCAAGTGGACACAA
CAGAGAGATATTAAGCTAAAGGCAAAGAAAGACAGCAACAGAAGTGAGGA
GCAGATTACACAGGAGCAGCTTGTGTCTGAATCTGAGAACCTCAAGACCT
GGGAGCGTGTATCAAAGCTGATCGATGCTGGTGAAGGTGATTCCAAGGGT
TCTGACACTGCTAGAATGCGCAAGCTGTTTATTCAGCTCAAGAATGAGCC
GCTTGAGGTCACACGTGGAGCTATTGAGGCCAAATAATAAATTTAACAGA
GAATGGAATGCCAAGCTCGATAAGAAAAGAGAGACTGAATTTGAAAATGA
AAAGTCCGTTAGAGCTGCCGCAGAGGAGGACAAGGCCAAGTGGACACAAC
AGAGAGATATTAAGCTAAAGGCAAAGAAAGACAGCAACAGAAGTGAGGAG
CAGATTACACAGGAGCAGCTTGTGTCTGAATCTGAGAACCTCAAGACCTG
GGAGCGTGTATCAAAGCTGATCGATGCTGGTGAAGGTGATTCCAAGGGTT
CTGACACTGCTAGAATGCGCAAGCTGTTTATTCAGCTCAAGAATGAGCCG
CTTGAGGTCACACGTGGAGCTATTGAGGCCAAATAA
back to top