mRNA_D-dudresnayi_contig10307.334.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10307.334.1
Unique NamemRNA_D-dudresnayi_contig10307.334.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A482SE92_9ARCH (Cytochrome P450 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE92_9ARCH)

HSP 1 Score: 141 bits (356), Expect = 1.770e-37
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTKI 237
            DRFGPERNEQKTPF YLGFG GRHACLGQQFG++QVKTI+S+L R +K EAID E PEPDYTAMVVGPK HC V+YT++
Sbjct:  396 DRFGPERNEQKTPFGYLGFGAGRHACLGQQFGILQVKTILSILFRNFKLEAIDNELPEPDYTAMVVGPKGHCRVKYTRL 474          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: D8LQM6_ECTSI (Obtusifoliol 14alpha-Demethylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.720e-26
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTK 234
            DRFGPER E K PFAYLGFG G H C+GQQF  +QVKTI+S+LLR YK E +  E P  D+ AMVVGPK  C VRYTK
Sbjct:  411 DRFGPERQEHKQPFAYLGFGAGMHQCMGQQFAFVQVKTILSVLLREYKIEMVG-ELPPADFNAMVVGPKGKCTVRYTK 487          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A7S3E0X5_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E0X5_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 1.480e-25
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 DRFGPERNEQKT-PFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDK--EFPEPDYTAMVVGPKNHCMVRYTKIK 240
            DRFGP R E K  PF+++GFGGGRH+C+G+ F  MQVK I+S+LLR + FE +    E PEPDYTAMVVGPK  C V+YTK K
Sbjct:  169 DRFGPGREEDKQKPFSFIGFGGGRHSCMGETFAYMQVKIIMSILLRKFDFELLSNGGEIPEPDYTAMVVGPKPPCKVKYTKKK 251          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A835YR70_9STRA (Obtusifoliol 14alpha-demethylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR70_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.480e-25
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTK 234
            DR+ P R E K P+AYLGFG G H C+GQQFG +QVKT+VS+LLR ++FE I+K+ PE +Y +MVVGPK + MVRY +
Sbjct:  405 DRYAPPREEHKAPYAYLGFGAGMHQCMGQQFGFLQVKTLVSILLRNFEFELIEKKMPELNYESMVVGPKGNIMVRYKR 482          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A7S2EDL1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDL1_TRICV)

HSP 1 Score: 107 bits (267), Expect = 9.810e-25
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 DRFGPERNEQKT-PFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTKIK*TT 249
            DRFGP R E K+ P+AYLGFGGG H+C+GQ F  +QVK I+S++ R Y+ E I KE PE DY AMVVGPK  C VRY + K TT
Sbjct:  415 DRFGPGREEHKSSPYAYLGFGGGMHSCMGQNFAFLQVKAILSVMFREYEIELIPKELPEIDYEAMVVGPKGDCRVRYKRRKGTT 498          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A7S2BVC5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVC5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.140e-23
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTKIK 240
            DRF   R E KTP+AYLGFGGG H C+GQQFG +QVKTI++ +L  Y+ E +    PEPDYTAMVVGPK   M RY + K
Sbjct:  167 DRFAAPREEHKTPYAYLGFGGGMHQCMGQQFGYLQVKTILATILSKYEIEMLGP-LPEPDYTAMVVGPKGKPMCRYKRRK 245          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A7S2UDY6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDY6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.670e-23
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTK 234
            DRFGP R E K P+AYLGFGGG H+C+GQ F  +QVKTI+S+L R YK   +  + P+ DY AMVVGPK  C +RY K
Sbjct:  413 DRFGPGREEHKQPYAYLGFGGGMHSCMGQNFAFIQVKTILSVLFREYKITPLFDKMPDIDYEAMVVGPKGDCRIRYQK 490          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A061QTA1_9CHLO (Sterol 14 desaturase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QTA1_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 2.160e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTK 234
            DRF P R E K  F+++GFGGGRH C+G  F  +Q+KTI S+LLR ++FE ID  FPEPDY +MVVGPK  C VRYT+
Sbjct:  149 DRFAPGREEDKRSFSFIGFGGGRHGCMGSNFAYLQIKTIWSVLLRNFEFELIDP-FPEPDYESMVVGPKP-CRVRYTR 224          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A6S9L9Q6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9L9Q6_HETAK)

HSP 1 Score: 102 bits (254), Expect = 2.180e-23
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNH-CMVRYTKIK 240
            DR+   R E K PFA+LGFGGG HAC+GQ FG MQVKTI+++LLR Y  E +   FPEPDYTAMVVGPK   C VRY++ K
Sbjct:  289 DRYAAGREEHKQPFAFLGFGGGMHACMGQNFGYMQVKTIMTVLLRRYDLE-LAGPFPEPDYTAMVVGPKEGTCKVRYSRRK 368          
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Match: A0A7S1G287_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G287_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.400e-23
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 DRFGPERNEQKTPFAYLGFGGGRHACLGQQFGLMQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTK 234
            DRFGP R E K P+AYLGFGGG H+C+GQ F  +QVK I+S+L R Y  E +  + P+ DY AMVVGPK  C +RY +
Sbjct:  411 DRFGPGREEHKVPYAYLGFGGGMHSCMGQNFAFLQVKIIMSILFRMYDIELVSGKMPDIDYEAMVVGPKGDCTIRYKR 488          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10307.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SE92_9ARCH1.770e-3778.48Cytochrome P450 n=1 Tax=archaeon TaxID=1906665 Rep... [more]
D8LQM6_ECTSI9.720e-2666.67Obtusifoliol 14alpha-Demethylase n=1 Tax=Ectocarpu... [more]
A0A7S3E0X5_9CHLO1.480e-2561.45Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A835YR70_9STRA3.480e-2560.26Obtusifoliol 14alpha-demethylase n=1 Tax=Tribonema... [more]
A0A7S2EDL1_TRICV9.810e-2560.71Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2BVC5_9STRA1.140e-2360.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UDY6_9STRA1.670e-2358.97Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A061QTA1_9CHLO2.160e-2360.26Sterol 14 desaturase n=1 Tax=Tetraselmis sp. GSL01... [more]
A0A6S9L9Q6_HETAK2.180e-2362.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G287_9STRA4.400e-2356.41Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10307contigD-dudresnayi_contig10307:210..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size385
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10307.334.1prot_D-dudresnayi_contig10307.334.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10307 309..452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.5945756-UTR-D-dudresnayi_contig10307:209..3081622927529.5945756-UTR-D-dudresnayi_contig10307:209..308Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 210..308 +
1690556794.490957-UTR-D-dudresnayi_contig10307:209..3081690556794.490957-UTR-D-dudresnayi_contig10307:209..308Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 210..308 +
1622927529.6214664-UTR-D-dudresnayi_contig10307:452..5941622927529.6214664-UTR-D-dudresnayi_contig10307:452..594Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 453..594 +
1690556794.5182695-UTR-D-dudresnayi_contig10307:452..5941690556794.5182695-UTR-D-dudresnayi_contig10307:452..594Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10307 453..594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.6088119-CDS-D-dudresnayi_contig10307:308..4521622927529.6088119-CDS-D-dudresnayi_contig10307:308..452Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 309..452 +
1690556794.5021684-CDS-D-dudresnayi_contig10307:308..4521690556794.5021684-CDS-D-dudresnayi_contig10307:308..452Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10307 309..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10307.334.1

>prot_D-dudresnayi_contig10307.334.1 ID=prot_D-dudresnayi_contig10307.334.1|Name=mRNA_D-dudresnayi_contig10307.334.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=48bp
MQVKTIVSLLLRTYKFEAIDKEFPEPDYTAMVVGPKNHCMVRYTKIK*
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mRNA from alignment at D-dudresnayi_contig10307:210..594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10307.334.1 ID=mRNA_D-dudresnayi_contig10307.334.1|Name=mRNA_D-dudresnayi_contig10307.334.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=385bp|location=Sequence derived from alignment at D-dudresnayi_contig10307:210..594+ (Desmarestia dudresnayi DdudBR16 monoicous)
GATCGTTTCGGTCCTGAGCGCAATGAGCAGAAGACACCTTTTGCCTACCT GGGCTTCGGTGGTGGTCGCCATGCCTGTCTGGGTCAGCAGTTCGGTCTCA TGCAGGTGAAGACCATCGTGTCCCTGCTGCTGCGCACCTACAAGTTCGAG GCGATCGACAAGGAGTTTCCTGAGCCCGACTACACTGCCATGGTGGTGGG TCCCAAGAACCACTGCATGGTGCGCTACACGAAGATCAAATAAACAACTG GCTTGATTTAGCATGCTAGTTTTATGTTGCTTAGTGTACAGTACCATCAT CATACATCGTACCAATACTAATAGGAGTAAGGAGTAGATAGGAGTCAGTG CCTGCATGTTGCTCGATTCAGCTGCGATTTTGTGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10307:210..594+

>mRNA_D-dudresnayi_contig10307.334.1 ID=mRNA_D-dudresnayi_contig10307.334.1|Name=mRNA_D-dudresnayi_contig10307.334.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at D-dudresnayi_contig10307:210..594+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAGGTGAAGACCATCGTGTCCCTGCTGCTGCGCACCTACAAGTTCGA
GGCGATCGACAAGGAGTTTCCTGAGCCCGACTACACTGCCATGGTGGTGG
GTCCCAAGAACCACTGCATGGTGCGCTACACGAAGATCAAATAAATGCAG
GTGAAGACCATCGTGTCCCTGCTGCTGCGCACCTACAAGTTCGAGGCGAT
CGACAAGGAGTTTCCTGAGCCCGACTACACTGCCATGGTGGTGGGTCCCA
AGAACCACTGCATGGTGCGCTACACGAAGATCAAATAA
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