mRNA_D-dudresnayi_contig10306.333.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10306.333.1
Unique NamemRNA_D-dudresnayi_contig10306.333.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: D7FQ21_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ21_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 7.030e-24
Identity = 64/118 (54.24%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:   52 MRTSIPAMAALMALLSRTGAFISPSGSMRVRGQHAGRNAARFPTQQSGA----RATR-GISYRTRMSTNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            M  ++P MAAL ALLSRTGAF+S  G  +          + F T   G     R+ R G++YR   S+      ATEK+AVFGGGCFWCIEAVF+ L+GV KVVSGYAGGTM+NPTYR
Sbjct:    1 MTKTLPVMAALFALLSRTGAFVSSPGLSK----------SSFATTDRGTSDAVRSRRQGVAYRP-CSSAAATVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYR 107
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A7S0CNL4_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CNL4_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 6.610e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  220 YRTRMSTNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYRA 393
            Y    S + V      +RAVFGGGCFWCIEAVF++L+GV+KVVSGYAGGT  NPTY A
Sbjct:   61 YLRARSQSEVHQGGGAQRAVFGGGCFWCIEAVFRELKGVKKVVSGYAGGTSSNPTYEA 118
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A524EDQ9_THOAR (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524EDQ9_THOAR)

HSP 1 Score: 74.3 bits (181), Expect = 7.390e-14
Identity = 29/41 (70.73%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  268 KRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            ++A FGGGCFWC+EAVF+K++GVR VVSGYAGG ++NPTY+
Sbjct:    2 EKATFGGGCFWCVEAVFEKMKGVRSVVSGYAGGHVENPTYQ 42
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A3G9HCU7_9PROT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Hydrogenimonas sp. TaxID=2231112 RepID=A0A3G9HCU7_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 7.440e-14
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:  241 NNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYRA 393
            N V  + T +RAV GGGCFWC+EAV+++++GV +VVSGYAGGT++NPTY A
Sbjct:   18 NGVEMSETTERAVLGGGCFWCLEAVYEEVKGVEEVVSGYAGGTVENPTYEA 68
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A7Y2H900_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2H900_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.240e-13
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  268 KRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            K+A FGGGCFWC+EAVFQ+++GV KV+SGYAGG + NPTYR
Sbjct:    2 KKAYFGGGCFWCVEAVFQRIKGVNKVISGYAGGKIKNPTYR 42
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A2V9VYN6_9BACT (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9VYN6_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.760e-13
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  253 ATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            A   E+ A+FGGGCFWCIEAVF++L GV++VVSGY GG ++NPTYR
Sbjct:    2 AMTKEETAIFGGGCFWCIEAVFERLRGVKEVVSGYMGGQIENPTYR 47
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A518IRN7_9BACT (Peptide methionine sulfoxide reductase MsrA n=3 Tax=Rosistilla TaxID=2795779 RepID=A0A518IRN7_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 5.220e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  238 TNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            T   PAT   K A FG GCFWC+EAVFQ+LEGV K+VSGY GG + NPTY+
Sbjct:   29 TAGQPATGELKIATFGAGCFWCVEAVFQRLEGVEKIVSGYMGGKVPNPTYK 79
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A846MM38_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Thermonema lapsum TaxID=28195 RepID=A0A846MM38_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 5.500e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  226 TRMSTNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            T +S +    T   + A FGGGCFWCIEAVFQ+L+GV KVVSGYAGG  +NPTY+
Sbjct:   30 TSLSMSQTQQTKNLEIATFGGGCFWCIEAVFQRLKGVEKVVSGYAGGHKENPTYK 84
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A7W1ZQY8_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1ZQY8_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 6.130e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  235 STNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYR 390
            STN+ P +A+ + A  GGGCFWC EAVF+ L+GV+ V+SGYAGG  +NPTY+
Sbjct:   22 STNSTPDSASTELATIGGGCFWCTEAVFETLDGVKSVISGYAGGKTENPTYQ 73
[Close]
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Match: A0A556AMV9_9BURK (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Verticiella sediminum TaxID=1247510 RepID=A0A556AMV9_9BURK)

HSP 1 Score: 75.5 bits (184), Expect = 6.630e-13
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  253 ATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVSGYAGGTMDNPTYRA 393
            + ATE+ AVFGGGCFWC EAVFQ+L GVR V+ GYAGG +D PTY A
Sbjct:   14 SAATEEVAVFGGGCFWCTEAVFQQLRGVRSVMPGYAGGHVDQPTYEA 60
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10306.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ21_ECTSI7.030e-2454.24Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A7S0CNL4_9EUKA6.610e-1463.79Peptide-methionine (S)-S-oxide reductase n=1 Tax=A... [more]
A0A524EDQ9_THOAR7.390e-1470.73Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A3G9HCU7_9PROT7.440e-1462.75Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A7Y2H900_9BACT3.240e-1373.17Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A2V9VYN6_9BACT3.760e-1367.39Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A518IRN7_9BACT5.220e-1364.71Peptide methionine sulfoxide reductase MsrA n=3 Ta... [more]
A0A846MM38_9BACT5.500e-1361.82Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A7W1ZQY8_9BACT6.130e-1359.62Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A556AMV9_9BURK6.630e-1370.21Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10306contigD-dudresnayi_contig10306:5223..6592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue8.9e-12
Seed eggNOG ortholog313606.M23134_06910
Preferred namemsrA
KEGG koko:K07304,ko:K12267
EggNOG free text desc.Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EggNOG OGs47PB4@768503,4NMAJ@976,COG0225@1,COG0225@2
EC1.8.4.11,1.8.4.12
COG Functional cat.O
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-01_007800.1
Exons2
Model size803
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10306.333.1prot_D-dudresnayi_contig10306.333.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10306 5489..6541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.5227804-UTR-D-dudresnayi_contig10306:5222..54881622927529.5227804-UTR-D-dudresnayi_contig10306:5222..5488Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10306 5223..5488 -
1690556794.4478307-UTR-D-dudresnayi_contig10306:5222..54881690556794.4478307-UTR-D-dudresnayi_contig10306:5222..5488Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10306 5223..5488 -
1622927529.561402-UTR-D-dudresnayi_contig10306:6541..65921622927529.561402-UTR-D-dudresnayi_contig10306:6541..6592Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10306 6542..6592 -
1690556794.4808393-UTR-D-dudresnayi_contig10306:6541..65921690556794.4808393-UTR-D-dudresnayi_contig10306:6541..6592Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10306 6542..6592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.537634-CDS-D-dudresnayi_contig10306:5488..57261622927529.537634-CDS-D-dudresnayi_contig10306:5488..5726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10306 5489..5726 -
1690556794.4598637-CDS-D-dudresnayi_contig10306:5488..57261690556794.4598637-CDS-D-dudresnayi_contig10306:5488..5726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10306 5489..5726 -
1622927529.5498054-CDS-D-dudresnayi_contig10306:6293..65411622927529.5498054-CDS-D-dudresnayi_contig10306:6293..6541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10306 6294..6541 -
1690556794.471236-CDS-D-dudresnayi_contig10306:6293..65411690556794.471236-CDS-D-dudresnayi_contig10306:6293..6541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10306 6294..6541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10306.333.1

>prot_D-dudresnayi_contig10306.333.1 ID=prot_D-dudresnayi_contig10306.333.1|Name=mRNA_D-dudresnayi_contig10306.333.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=162bp
MRTSIPAMAALMALLSRTGAFISPSGSMRVRGQHAGRNAARFPTQQSGAR
ATRGISYRTRMSTNNVPATATEKRAVFGGGCFWCIEAVFQKLEGVRKVVS
GYAGGTMDNPTYRASVYHTPRLRPLPSCCCLARMCVLATMIWSSTIIGSD
GIVQLRRRCND*
back to top

mRNA from alignment at D-dudresnayi_contig10306:5223..6592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10306.333.1 ID=mRNA_D-dudresnayi_contig10306.333.1|Name=mRNA_D-dudresnayi_contig10306.333.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1370bp|location=Sequence derived from alignment at D-dudresnayi_contig10306:5223..6592- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTGCTCTGTCCCTTGTGCAGTCTCTGCTGAGTCTCTTCGTGTGCTCACC
AATGAGGACGTCGATTCCAGCAATGGCTGCCCTTATGGCTTTGCTCTCCC
GCACGGGAGCTTTTATTTCCCCATCTGGGAGTATGAGAGTGAGAGGTCAG
CACGCTGGCAGAAATGCGGCGCGATTTCCCACACAGCAATCAGGGGCACG
AGCAACTCGAGGCATCTCGTACAGGACTCGCATGTCTACTAATAATGTGC
CCGCGACCGCCACGGAGAAGAGGGCTGTCTTTGGTGGAGGTTGTTTTTGG
TGAGTTTCCCTGGTGGTAAAGGGGGAGGGCTAGCATACGAACTGACGTCG
TAGTATAATGCAGAAAGGCCGGCACATGACACATGACACATGACACGTCT
GTTGTCACATGTGTTGAGACATCATGACAGCGTACGCAACTCTATTATAC
AGGTAAGTCTACTACTACAGTAGTTGTAAGTATCATTATGATTATATAGC
TCTAGAGTGTATGGTAGAGTCTGACAACTAACAGCACCTTTATCGCGTGA
TATGCACATGGTATCATCCATAGACATTGCATCATAAGCTCCCATGTCGG
CGTTCTGGCCTGTTTTATATGCTGGGATAATGTACGACAACAAAACAACA
AACAACAAAACACCGCTTTGGCACCGTCACGCCACGGGTTCCAGCACACG
CAGCGCACACGAGTATTAGAATCATAGCACATGCGAAGACGCCAGGAGTA
TATGCTCTCGACTACAAATTGATACGTGAACAATCACCAATAGCTGCCTC
CTTTTACGCCACCACCTTCTTCCGTGCACGCGCAAAAAAAAAATGTTTGT
TGTCGTTTCGTTGCAGGTGCATCGAGGCCGTGTTTCAAAAGCTGGAGGGC
GTGCGGAAGGTCGTGTCGGGCTACGCCGGTGGGACGATGGACAACCCTAC
CTACAGGGCGAGTGTATATCATACACCACGCCTCCGGCCCCTTCCCAGTT
GCTGTTGTTTAGCTCGTATGTGTGTACTTGCAACTATGATATGGAGCTCT
ACTATTATAGGGAGCGATGGAATTGTGCAGCTACGGCGACGTTGCAACGA
TTAACGTTGCTGTGGCGTGGTGCGTGCGCGAAGACTCTCTTGATAGCTGA
TAGCAACTACTACTGTAGTCTAAACGCAAAATACACAGCATTGTATTGTA
GCCGGGGCGCGACTTACTGTCGTTAAGATACCAGCTACGCGAAAATAAGA
ACGCCAAAAAAGCTTTTGAGAAGAAACAAAAAAGAAAGAGCTTAAAAAAA
ACGATAATTTCTAAGATTACAAGGTTTCACACCCTGTACAACTATAACTA
ATAACCACACCCTGTACAAC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10306:5223..6592-

>mRNA_D-dudresnayi_contig10306.333.1 ID=mRNA_D-dudresnayi_contig10306.333.1|Name=mRNA_D-dudresnayi_contig10306.333.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at D-dudresnayi_contig10306:5223..6592- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGGACGTCGATTCCAGCAATGGCTGCCCTTATGGCTTTGCTCTCCCG
CACGGGAGCTTTTATTTCCCCATCTGGGAGTATGAGAGTGAGAGGTCAGC
ACGCTGGCAGAAATGCGGCGCGATTTCCCACACAGCAATCAGGGGCACGA
GCAACTCGAGGCATCTCGTACAGGACTCGCATGTCTACTAATAATGTGCC
CGCGACCGCCACGGAGAAGAGGGCTGTCTTTGGTGGAGGTTGTTTTTGAT
GAGGACGTCGATTCCAGCAATGGCTGCCCTTATGGCTTTGCTCTCCCGCA
CGGGAGCTTTTATTTCCCCATCTGGGAGTATGAGAGTGAGAGGTCAGCAC
GCTGGCAGAAATGCGGCGCGATTTCCCACACAGCAATCAGGGGCACGAGC
AACTCGAGGCATCTCGTACAGGACTCGCATGTCTACTAATAATGTGCCCG
CGACCGCCACGGAGAAGAGGGCTGTCTTTGGTGGAGGTTGTTTTTGGTGC
ATCGAGGCCGTGTTTCAAAAGCTGGAGGGCGTGCGGAAGGTCGTGTCGGG
CTACGCCGGTGGGACGATGGACAACCCTACCTACAGGGCGAGTGTATATC
ATACACCACGCCTCCGGCCCCTTCCCAGTTGCTGTTGTTTAGCTCGTATG
TGTGTACTTGCAACTATGATATGGAGCTCTACTATTATAGGGAGCGATGG
AATTGTGCAGCTACGGCGACGTTGCAACGATTAAGTGCATCGAGGCCGTG
TTTCAAAAGCTGGAGGGCGTGCGGAAGGTCGTGTCGGGCTACGCCGGTGG
GACGATGGACAACCCTACCTACAGGGCGAGTGTATATCATACACCACGCC
TCCGGCCCCTTCCCAGTTGCTGTTGTTTAGCTCGTATGTGTGTACTTGCA
ACTATGATATGGAGCTCTACTATTATAGGGAGCGATGGAATTGTGCAGCT
ACGGCGACGTTGCAACGATTAA
back to top