mRNA_D-dudresnayi_contig10291.322.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10291.322.1
Unique NamemRNA_D-dudresnayi_contig10291.322.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: D7FKF3_ECTSI (HSCB_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF3_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.380e-60
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLHAIEDARAKP 432
            DL+A K EDE+ ISAANSATANKAYQTL  PM RVKYLMR+LGSTALEE+   D+TS+P +FLME++ETR+ALE C+S++EAEA+L+ET  +V+ECL GMD VL +GG K+++ D AVRLRYLYRIEDEARRV+H +ED  A P
Sbjct:  169 DLYASKSEDEREISAANSATANKAYQTLVQPMARVKYLMRLLGSTALEEEGEDDRTSVPMDFLMEVMETREALEGCSSKEEAEAILSETSVAVEECLSGMDEVLKAGGGKDELSDAAVRLRYLYRIEDEARRVMHRLEDGLASP 312          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A836CIW0_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.730e-18
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRML-GSTALEEDSGGDKTSLPPE--FLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSG--GAKEDVIDFAVRLRYLYRIEDEARRVLHAIEDARAK 429
            DL A K ++E+AISAAN+A  N+AYQTL  P+ RV+Y+++++ G    E  +  ++++ PP+   LM + +TR+ LE C SE EA  VL +   S+D  L  +   +++G   A E  ++   RL+YL +I +EA  V H + DA A+
Sbjct:  150 DLHAVKSQEEQAISAANTAFVNQAYQTLRDPVKRVRYVLQLMKGQDEAEAAAHAERSATPPDPALLMFVYDTRERLERCASEQEARYVLRDAEQSMDAQLSELRGEVAAGDVAAVERGLN---RLQYLAKIAEEACSVEHRLADAAAE 294          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A485KZX6_9STRA (Aste57867_14105 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZX6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.920e-14
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLHAIEDA 420
            DL+  K + EK +S  NSA  N+AY  L  P  R  Y++ + G  AL E+S    T + P  LMEI+E R+A+EECT+ +       E    ++ C++ +   L +    E      V L+YL ++ D       A+E+A
Sbjct:   78 DLYGSKSQTEKEMSIVNSALVNQAYNLLKAPTSRANYMLHLHGIDALGENS----TFVDPAVLMEIMEAREAVEECTTVEGLIPHKTENAKQINRCIKQLTEALDTHEDFEASKKLTVELQYLVKLSDAILEKEEALEEA 213          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A074SYL0_9AGAM (Fe-S protein assembly co-chaperone HscB n=3 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074SYL0_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 9.470e-14
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLH 405
            D ++ K E +KA +A  S+  NK Y+TL  P+ R +YL+ + G+   E DS  D     P F+MEI+ETR+++EE  + D  E +LAE      + +  +     SG  K    + +VRL+Y   ++D     LH
Sbjct:   93 DAWSAKPEKDKATAATYSSFVNKGYETLKSPLKRAEYLLSLRGTETGETDSLED-----PHFIMEIMETRESVEEAETRDVLETLLAENHERTQDEIETIAKAFDSGDLKI-AKEASVRLKYRIGVQDSINARLH 221          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A167JE60_CALVF (Co-chaperone Hsc20 n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167JE60_CALVF)

HSP 1 Score: 71.2 bits (173), Expect = 4.190e-12
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSG---GAKEDVIDFAVRLRYLYRIEDEAR 393
            D +  K E E+  +A  S+  N+AY+TL  P+ R +YL+ + G  +LE D+  + +S     L+E+LETR+ALE   +E E E +        +E +  + A+   G   GAKE     AVRLRY   IED  +
Sbjct:  125 DAWGSKGELERQRAADQSSLLNQAYKTLVSPLSRAQYLLSLNGQPSLETDALDEASSA---LLLEVLETREALESAANEQELEEIRTANDARAEETVAELSALFGRGEWEGAKEA----AVRLRYWQGIEDAVK 251          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A8H3DUF3_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DUF3_9AGAM)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-11
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLH 405
            D ++ K E +KA +A  S+  NK Y+TL  P+ R +YL+ + G+   E DS  D+      F+MEI+ETR+ +EE  + ++ E +L+E    +   +  +     SG  K    + +VRL+Y   +E+     LH
Sbjct:   92 DAWSAKPEKDKAAAATYSSFVNKGYETLRSPLKRAEYLLSLRGAETGETDSLEDQ-----HFIMEIMETRENVEEAETRNDLETLLSENSEQMQGEIDTISKAFGSGDLKT-AKEASVRLKYRLGVEESINARLH 220          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A165E9S7_9BASI (Co-chaperone Hsc20 n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165E9S7_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 1.720e-11
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEAR 393
            D +  K E E+  +A  S+  N+AY+TL  P+ R +YL+ + G  +LE DS  + +S     L+E+LETR+ALE   S  E E + A       E +R +  + ++G   E   D AVRLRY   IED  +
Sbjct:  131 DAWGSKGEVERQRAADQSSLLNQAYKTLVSPLSRAQYLLSLNGHPSLETDSLSETSS---SLLLEVLETREALEGAASLPELEEIRAANDLRAQEEVRLLSGLFAAGKWAE-AKDAAVRLRYWQGIEDAVK 257          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: C1EH60_MICCC (J domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EH60_MICCC)

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-11
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   40 SAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLP------PEFLMEILETRQALEECTSEDEAEAVLAETRNSVD-ECLRGMDAVLSSGG---AKEDVIDFAVRLRYLYRIEDEARRVL 402
            SA  ++  N+AY TL  P+ R KY++R  G+   EE   GD+   P      P  LM+++ETR+A+E    +  A   +A   ++ + EC+  + A + +G    A+++     VRL YL RI DE +R L
Sbjct:  162 SADQASLVNRAYATLRDPLRRAKYMLRAFGAGVAEESGMGDEQGSPAGDTIDPTLLMDVMETREAIERAGDDASALGAMATANDAAEHECVAALGAAMDAGDLATARKET----VRLTYLVRIRDEIKRRL 288          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: UPI000B98439D (iron-sulfur cluster co-chaperone protein HscB n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI000B98439D)

HSP 1 Score: 68.9 bits (167), Expect = 3.170e-11
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDV---IDFAVRLRYLYRIEDEARRVLH 405
            D F  K E EK+IS   S+  NKAY TL +P+ R  Y++++ G +  EE++  DK     EFLME++E  +ALEE T   +   + AE +     C+  + A LS+   ++D+   I    +L+Y   I+ + + + H
Sbjct:  127 DKFGNKSEKEKSISEEYSSLINKAYNTLQNPLDRGLYMLKLKGLSIEEENTDLDK-----EFLMEMMERNEALEEATQPKQIIQLDAENKK----CIGSLVAELSAAFERKDLNTAIKIVSKLKYFTSIDSKIKVLKH 255          
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Match: A0A0B7FN69_THACB (Iron-sulfur cluster co-chaperone protein HscB, mitochondrial n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FN69_THACB)

HSP 1 Score: 67.8 bits (164), Expect = 5.350e-11
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEEDSGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGMDAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLH 405
            D ++ K E +KA +A  S+  NK Y+TL  P+ R +YL+ + G+   E DS  D+      F+MEI++TR+++EE  S  + E +LA+    V   +  +     SG   +   + +VRL+Y   + D     LH
Sbjct:   93 DAWSAKPEKDKAAAANYSSFVNKGYETLKSPLRRAEYLLSLRGTEMGETDSLEDQ-----HFIMEIMDTRESVEEAESRSDLEGLLADNNAQVQGEIDAISNAFDSGDL-QTAKEASVRLKYRLGVTDSINARLH 221          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10291.322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKF3_ECTSI1.380e-6068.06HSCB_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CIW0_9STRA1.730e-1838.51J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A485KZX6_9STRA2.920e-1432.86Aste57867_14105 protein n=1 Tax=Aphanomyces stella... [more]
A0A074SYL0_9AGAM9.470e-1434.07Fe-S protein assembly co-chaperone HscB n=3 Tax=Rh... [more]
A0A167JE60_CALVF4.190e-1235.82Co-chaperone Hsc20 n=1 Tax=Calocera viscosa (strai... [more]
A0A8H3DUF3_9AGAM1.400e-1131.85Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A165E9S7_9BASI1.720e-1136.64Co-chaperone Hsc20 n=1 Tax=Calocera cornea HHB1273... [more]
C1EH60_MICCC2.200e-1133.59J domain-containing protein n=2 Tax=Micromonas Tax... [more]
UPI000B98439D3.170e-1133.33iron-sulfur cluster co-chaperone protein HscB n=1 ... [more]
A0A0B7FN69_THACB5.350e-1131.85Iron-sulfur cluster co-chaperone protein HscB, mit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10291contigD-dudresnayi_contig10291:868..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue3.1e-48
Seed eggNOG ortholog2880.D7FKF3
Preferred nameHSCB
KEGG rclassRC00074,RC00514
KEGG koko:K01489,ko:K04082,ko:K15151
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006091,GO:0006790,GO:0008047,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0016226,GO:0022607,GO:0030234,GO:0030544,GO:0031072,GO:0031163,GO:0032781,GO:0042802,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0044571,GO:0045333,GO:0050790,GO:0051087,GO:0051186,GO:0051336,GO:0051345,GO:0055114,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0071840,GO:0098772
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG1076@1,KOG3192@2759
EC3.5.4.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCo-chaperone HscB, C-terminal oligomerisation domain
Ec32 orthologEc-12_002270.1
Exons2
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.2284682-CDS-D-dudresnayi_contig10291:867..9811622927528.2284682-CDS-D-dudresnayi_contig10291:867..981Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10291 868..981 +
1690556793.6739151-CDS-D-dudresnayi_contig10291:867..9811690556793.6739151-CDS-D-dudresnayi_contig10291:867..981Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10291 868..981 +
1622927528.2407985-CDS-D-dudresnayi_contig10291:1327..16481622927528.2407985-CDS-D-dudresnayi_contig10291:1327..1648Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10291 1328..1648 +
1690556793.6876936-CDS-D-dudresnayi_contig10291:1327..16481690556793.6876936-CDS-D-dudresnayi_contig10291:1327..1648Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10291 1328..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10291.322.1prot_D-dudresnayi_contig10291.322.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10291 868..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10291.322.1

>prot_D-dudresnayi_contig10291.322.1 ID=prot_D-dudresnayi_contig10291.322.1|Name=mRNA_D-dudresnayi_contig10291.322.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=145bp
DLFAGKCEDEKAISAANSATANKAYQTLTHPMPRVKYLMRMLGSTALEED
SGGDKTSLPPEFLMEILETRQALEECTSEDEAEAVLAETRNSVDECLRGM
DAVLSSGGAKEDVIDFAVRLRYLYRIEDEARRVLHAIEDARAKP*
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mRNA from alignment at D-dudresnayi_contig10291:868..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10291.322.1 ID=mRNA_D-dudresnayi_contig10291.322.1|Name=mRNA_D-dudresnayi_contig10291.322.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=781bp|location=Sequence derived from alignment at D-dudresnayi_contig10291:868..1648+ (Desmarestia dudresnayi DdudBR16 monoicous)
GATCTCTTTGCCGGCAAGTGTGAAGACGAGAAAGCAATATCGGCAGCGAA CTCAGCGACAGCAAACAAGGCTTACCAGACCCTAACCCATCCAATGCCGC GCGTCAAGTACCTGGTGAGTGAGGCTGCGCGACGTATGATACGGACGTAC TTGTATGAAAGCATGCTGCTCTCCGTGGGATAGGAAAAATTTGCACAGTT GCAGTGCGCCCTTGGATGCGCCAGAGGTTGAAATCATTACACGTTCGATG TGTGCTTTCTGGGGGATGTGAACGTATCTGCTGATGATCTGGTGTCGGCT TTTCAGCGCTGCTTATAATGATTCTTGTTCAATTTTCATTGTGATACTCG TATTATATGATTTGTCTTCGCAGTCACCCTCTATACATTGGCTACGCGAG TGAGTTGTTTTTCTGGTGACATGGCGACATCAACTCGAAACTCGTCGTGA TACACCGCAGATGCGCATGCTAGGATCAACAGCGCTGGAAGAGGATTCGG GAGGGGACAAAACGTCACTGCCCCCAGAATTCCTCATGGAAATATTAGAA ACGCGACAAGCATTGGAGGAATGCACATCAGAAGACGAGGCAGAAGCGGT GTTGGCAGAGACGAGGAATTCAGTAGACGAGTGCCTGCGCGGCATGGATG CCGTGTTGAGTTCAGGGGGTGCCAAAGAAGACGTTATCGATTTTGCCGTA AGACTAAGGTATCTGTACCGTATCGAGGATGAAGCACGGCGTGTACTGCA CGCCATAGAGGATGCACGCGCAAAACCTTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10291:868..1648+

>mRNA_D-dudresnayi_contig10291.322.1 ID=mRNA_D-dudresnayi_contig10291.322.1|Name=mRNA_D-dudresnayi_contig10291.322.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at D-dudresnayi_contig10291:868..1648+ (Desmarestia dudresnayi DdudBR16 monoicous)
GATCTCTTTGCCGGCAAGTGTGAAGACGAGAAAGCAATATCGGCAGCGAA
CTCAGCGACAGCAAACAAGGCTTACCAGACCCTAACCCATCCAATGCCGC
GCGTCAAGTACCTGGATCTCTTTGCCGGCAAGTGTGAAGACGAGAAAGCA
ATATCGGCAGCGAACTCAGCGACAGCAAACAAGGCTTACCAGACCCTAAC
CCATCCAATGCCGCGCGTCAAGTACCTGATGCGCATGCTAGGATCAACAG
CGCTGGAAGAGGATTCGGGAGGGGACAAAACGTCACTGCCCCCAGAATTC
CTCATGGAAATATTAGAAACGCGACAAGCATTGGAGGAATGCACATCAGA
AGACGAGGCAGAAGCGGTGTTGGCAGAGACGAGGAATTCAGTAGACGAGT
GCCTGCGCGGCATGGATGCCGTGTTGAGTTCAGGGGGTGCCAAAGAAGAC
GTTATCGATTTTGCCGTAAGACTAAGGTATCTGTACCGTATCGAGGATGA
AGCACGGCGTGTACTGCACGCCATAGAGGATGCACGCGCAAAACCTTGAA
TGCGCATGCTAGGATCAACAGCGCTGGAAGAGGATTCGGGAGGGGACAAA
ACGTCACTGCCCCCAGAATTCCTCATGGAAATATTAGAAACGCGACAAGC
ATTGGAGGAATGCACATCAGAAGACGAGGCAGAAGCGGTGTTGGCAGAGA
CGAGGAATTCAGTAGACGAGTGCCTGCGCGGCATGGATGCCGTGTTGAGT
TCAGGGGGTGCCAAAGAAGACGTTATCGATTTTGCCGTAAGACTAAGGTA
TCTGTACCGTATCGAGGATGAAGCACGGCGTGTACTGCACGCCATAGAGG
ATGCACGCGCAAAACCTTGA
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