mRNA_D-dudresnayi_contig10289.321.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10289.321.1
Unique NamemRNA_D-dudresnayi_contig10289.321.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A6H5JBN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN7_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.420e-31
Identity = 81/136 (59.56%), Postives = 91/136 (66.91%), Query Frame = 2
Query:  134 MPCLATRALA---AVCTLSAAAGFFVAPDVTSGVSKTCV--------SGATRQRARQCSRPRPTMAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            MP LA  A A   A C LSA  GF V    + G S            + +    A+Q   P    A PVVKRVAIVGAG+GGL+LANALC+ G+ AVDEV+VFEKFDSVKPGIGGGVQINSGAV+LARLGLGDAIK
Sbjct:    1 MPPLARTAAAIAAAACMLSAVTGFVVPSAGSCGPSADVAKTRHILRRASSRTTLAQQYHHPLVMAAAPVVKRVAIVGAGVGGLTLANALCT-GSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAIK 135          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: D8LRC6_ECTSI (Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.020e-27
Identity = 82/136 (60.29%), Postives = 93/136 (68.38%), Query Frame = 2
Query:  134 MPCLATRALA---AVCTLSAAAGFFVAPDVTSG----VSKTC-VSGATRQR---ARQCSRPRPTMAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            MP LA  A A   A C LSA  GF V    + G    V+KT  + G    R   A+         A PVVKRVAIVGAG+GGL+LANALC+ G+ AVDEV+VFEKFDSVKPGIGGGVQINSGAV+LARLGLGDA+K
Sbjct:    1 MPPLARTAAAIAAAACMLSAVTGFVVPSAGSCGPSADVAKTRRILGTAPSRTTVAQXXXXXXXXXAAPVVKRVAIVGAGVGGLTLANALCT-GSTAVDEVKVFEKFDSVKPGIGGGVQINSGAVILARLGLGDAVK 135          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A7S2B7W2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B7W2_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 4.230e-16
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  287 PTMAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            P+M  P ++RVA+VGAGIGGL+LA AL +     V+EV VFE+ D +KP IGGG+QIN GA VLARLGLG+ +K
Sbjct:   36 PSMLAPPLRRVAVVGAGIGGLALARALYTLDT-GVEEVVVFERRDEIKPNIGGGIQINGGAAVLARLGLGEQMK 108          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A0M0K4R9_9EUKA (FAD_binding_3 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4R9_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 2.560e-12
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  293 MAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            MAV   +RVA+VGAGIGGL+LA AL       V+E+ VF++   +KPG GGG+QIN GA VLARLGLG+ +K
Sbjct:    1 MAVTSPRRVAVVGAGIGGLALARALGELDT-GVEEIVVFDRRAELKPGTGGGIQINGGAAVLARLGLGEQVK 71          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: R1CJR6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CJR6_EMIHU)

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-12
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  287 PTMAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            PT   P  +RVA+VGAGIGGL+LA AL +     V+EV VF++   +KPG+GGG+QIN GA VLARLGLG+ +K
Sbjct:   23 PTPTSP--RRVAVVGAGIGGLALARALQTLDT-GVEEVAVFDRRSELKPGVGGGIQINGGAAVLARLGLGEQMK 93          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A836CJN1_9STRA (Monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.140e-9
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  308 VKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEK-FDSVKPGIGGGVQINSGAVVLARLGLGDAI 505
            ++R+AIVGAG GGL+LANAL       VDEVEVFE+   +++PG GGG+QINSGA +L  LG GD +
Sbjct:   28 LRRIAIVGAGAGGLTLANALRKLDT-GVDEVEVFERSVSNLQPGTGGGIQINSGASILRLLGFGDEL 93          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A7S1UMX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMX4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.960e-8
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  311 KRVAIVGAGIGGLSLANALCSNGAMA--VDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            +RVA+VGAG GGL+LA AL + G     V++V VFE+   ++PG+GGG+Q++ GA VLA LGL D +K
Sbjct:    8 QRVAVVGAGPGGLALARALEALGGAGAGVEDVTVFERRAGLEPGLGGGLQLSGGAAVLAELGLLDELK 75          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A7S2RL63_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL63_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.020e-8
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  314 RVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAI 505
            RV ++G GIGGLSLANAL    +    +V VF+K   ++PG+GGGVQ+  GA VLARLG G+ +
Sbjct:    9 RVGVIGGGIGGLSLANALIQQDSAF--DVTVFDKAAVLRPGLGGGVQLTGGAAVLARLGFGEEL 70          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A7S1J4I9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J4I9_9EUGL)

HSP 1 Score: 64.7 bits (156), Expect = 3.750e-8
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  146 ATRALAAVCTLSAAAGFFVAPDVTSGVSKTCVSGATRQRARQCSR---PRPTMAV--PVVKRVAIVGAGIGGLSLANALCSNGAM-AVDEVEVFEKFDS-VKPGIGGGVQINSGAVVLARLGLGDAIK 508
            A++++ AV T   AAG   A  + +   +T   GAT   A   +    P  T AV   V KRVAIVGAG GGL+ A ALC   A     +++++++ D   K G+GGG+Q+N GA VL RLGLG  ++
Sbjct:  214 ASKSILAVATALVAAG---AGLLANAWGRTAPRGATSNTALNAATSDGPSSTQAVLPNVPKRVAIVGAGPGGLAFARALCQLPASHRPTQIDIYDRRDDPFKAGLGGGIQLNGGAQVLDRLGLGAELR 338          
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Match: A0A8J5XJX9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJX9_DIALT)

HSP 1 Score: 60.5 bits (145), Expect = 7.770e-7
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  314 RVAIVGAGIGGLSLANALCSNGAMAVD-EVEVFEKFDSVKPGIGGGVQINSGAVVLARLGLGDAIK 508
            RV I+GAG  GL  A A+     +  D E+ V +K D ++P +GGGVQ+NSGA VLARLGLG A+K
Sbjct:   17 RVGIIGAGPAGL--AQAIAIRRLVGADVELVVIDKSDQLRPALGGGVQLNSGAAVLARLGLGAAVK 80          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10289.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JBN7_9PHAE2.420e-3159.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRC6_ECTSI1.020e-2760.29Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S2B7W2_9EUKA4.230e-1660.81Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0K4R9_9EUKA2.560e-1258.33FAD_binding_3 domain-containing protein n=1 Tax=Ch... [more]
R1CJR6_EMIHU2.900e-1258.11Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A836CJN1_9STRA1.140e-958.21Monooxygenase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1UMX4_9STRA2.960e-852.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RL63_9STRA3.020e-853.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1J4I9_9EUGL3.750e-840.63Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J5XJX9_DIALT7.770e-753.03Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10289contigD-dudresnayi_contig10289:1647..2450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue6.7e-26
Seed eggNOG ortholog2880.D8LRC6
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.13.1
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionMonooxygenase
Ec32 orthologEc-06_003030.1
Exons1
Model size804
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10289.321.1prot_D-dudresnayi_contig10289.321.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10289 1780..2292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.1543972-UTR-D-dudresnayi_contig10289:1646..17791622927528.1543972-UTR-D-dudresnayi_contig10289:1646..1779Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10289 1647..1779 +
1690556793.6349187-UTR-D-dudresnayi_contig10289:1646..17791690556793.6349187-UTR-D-dudresnayi_contig10289:1646..1779Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10289 1647..1779 +
1622927528.189904-UTR-D-dudresnayi_contig10289:2292..24501622927528.189904-UTR-D-dudresnayi_contig10289:2292..2450Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10289 2293..2450 +
1690556793.6607776-UTR-D-dudresnayi_contig10289:2292..24501690556793.6607776-UTR-D-dudresnayi_contig10289:2292..2450Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10289 2293..2450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.1714752-CDS-D-dudresnayi_contig10289:1779..22921622927528.1714752-CDS-D-dudresnayi_contig10289:1779..2292Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10289 1780..2292 +
1690556793.6511605-CDS-D-dudresnayi_contig10289:1779..22921690556793.6511605-CDS-D-dudresnayi_contig10289:1779..2292Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10289 1780..2292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10289.321.1

>prot_D-dudresnayi_contig10289.321.1 ID=prot_D-dudresnayi_contig10289.321.1|Name=mRNA_D-dudresnayi_contig10289.321.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=171bp
MPCLATRALAAVCTLSAAAGFFVAPDVTSGVSKTCVSGATRQRARQCSRP
RPTMAVPVVKRVAIVGAGIGGLSLANALCSNGAMAVDEVEVFEKFDSVKP
GIGGGVQINSGAVVLARLGLGDAIKVCWGLYGVYACCRVGSCTTTHAFCC
RLSMRKGGGYSVRTAYLGTR*
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mRNA from alignment at D-dudresnayi_contig10289:1647..2450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10289.321.1 ID=mRNA_D-dudresnayi_contig10289.321.1|Name=mRNA_D-dudresnayi_contig10289.321.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=804bp|location=Sequence derived from alignment at D-dudresnayi_contig10289:1647..2450+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGGATGTTTCGTATGCAACATGTGTGTGTGTCATGCAGACAGCACAGGCT AGCACAAGCAAATCAACGCCTGTAGCAAGTGCCTCCGTCTGGCTTGGCCA TTGACAACTGCGAAAAACCAAGGGAAGGGGACCATGCCCTGTCTTGCGAC AAGAGCTTTGGCAGCAGTATGCACACTATCGGCTGCTGCAGGTTTCTTCG TCGCCCCTGACGTGACCAGCGGAGTGTCCAAAACATGCGTCTCAGGTGCA ACACGCCAACGCGCTCGACAATGTTCTCGACCACGCCCCACTATGGCTGT GCCTGTGGTAAAGCGAGTTGCGATCGTGGGGGCAGGTATCGGGGGGCTGT CTCTTGCGAACGCTCTGTGCAGCAACGGTGCGATGGCCGTTGACGAGGTG GAGGTGTTTGAAAAGTTTGATTCGGTCAAGCCTGGGATAGGTGGAGGGGT CCAGATCAACAGTGGTGCTGTCGTGCTGGCGAGGCTTGGATTGGGCGATG CCATCAAGGTTTGCTGGGGGCTGTATGGTGTGTATGCTTGTTGCAGGGTT GGTTCGTGCACCACGACACACGCGTTCTGCTGTCGTTTGAGTATGCGCAA GGGGGGCGGGTATTCCGTACGTACAGCATACCTTGGCACCAGGTAGCAAT CAAGTGCGACGAGTACACCAGGTACTACTACTGTAATAGTGTAACAGTAG TATACGTAGGTATCATGCGATATTGATACGGGAGGTATGATACTACTGTT GTACGACTCCCGAACCTGTTTAGAACGCCACGGCTGATGCATCTGTAATT TAAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10289:1647..2450+

>mRNA_D-dudresnayi_contig10289.321.1 ID=mRNA_D-dudresnayi_contig10289.321.1|Name=mRNA_D-dudresnayi_contig10289.321.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at D-dudresnayi_contig10289:1647..2450+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCCTGTCTTGCGACAAGAGCTTTGGCAGCAGTATGCACACTATCGGC
TGCTGCAGGTTTCTTCGTCGCCCCTGACGTGACCAGCGGAGTGTCCAAAA
CATGCGTCTCAGGTGCAACACGCCAACGCGCTCGACAATGTTCTCGACCA
CGCCCCACTATGGCTGTGCCTGTGGTAAAGCGAGTTGCGATCGTGGGGGC
AGGTATCGGGGGGCTGTCTCTTGCGAACGCTCTGTGCAGCAACGGTGCGA
TGGCCGTTGACGAGGTGGAGGTGTTTGAAAAGTTTGATTCGGTCAAGCCT
GGGATAGGTGGAGGGGTCCAGATCAACAGTGGTGCTGTCGTGCTGGCGAG
GCTTGGATTGGGCGATGCCATCAAGGTTTGCTGGGGGCTGTATGGTGTGT
ATGCTTGTTGCAGGGTTGGTTCGTGCACCACGACACACGCGTTCTGCTGT
CGTTTGAGTATGCGCAAGGGGGGCGGGTATTCCGTACGTACAGCATACCT
TGGCACCAGGTAGATGCCCTGTCTTGCGACAAGAGCTTTGGCAGCAGTAT
GCACACTATCGGCTGCTGCAGGTTTCTTCGTCGCCCCTGACGTGACCAGC
GGAGTGTCCAAAACATGCGTCTCAGGTGCAACACGCCAACGCGCTCGACA
ATGTTCTCGACCACGCCCCACTATGGCTGTGCCTGTGGTAAAGCGAGTTG
CGATCGTGGGGGCAGGTATCGGGGGGCTGTCTCTTGCGAACGCTCTGTGC
AGCAACGGTGCGATGGCCGTTGACGAGGTGGAGGTGTTTGAAAAGTTTGA
TTCGGTCAAGCCTGGGATAGGTGGAGGGGTCCAGATCAACAGTGGTGCTG
TCGTGCTGGCGAGGCTTGGATTGGGCGATGCCATCAAGGTTTGCTGGGGG
CTGTATGGTGTGTATGCTTGTTGCAGGGTTGGTTCGTGCACCACGACACA
CGCGTTCTGCTGTCGTTTGAGTATGCGCAAGGGGGGCGGGTATTCCGTAC
GTACAGCATACCTTGGCACCAGGTAG
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