mRNA_D-dudresnayi_contig10279.315.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10279.315.1
Unique NamemRNA_D-dudresnayi_contig10279.315.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10279.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10279contigD-dudresnayi_contig10279:94..588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size495
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10279.315.1prot_D-dudresnayi_contig10279.315.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10279 222..521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.5670612-UTR-D-dudresnayi_contig10279:93..2211622927527.5670612-UTR-D-dudresnayi_contig10279:93..221Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10279 94..221 +
1690556793.3219342-UTR-D-dudresnayi_contig10279:93..2211690556793.3219342-UTR-D-dudresnayi_contig10279:93..221Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10279 94..221 +
1622927527.5880117-UTR-D-dudresnayi_contig10279:521..5881622927527.5880117-UTR-D-dudresnayi_contig10279:521..588Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10279 522..588 +
1690556793.35015-UTR-D-dudresnayi_contig10279:521..5881690556793.35015-UTR-D-dudresnayi_contig10279:521..588Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10279 522..588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.5774205-CDS-D-dudresnayi_contig10279:221..5211622927527.5774205-CDS-D-dudresnayi_contig10279:221..521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10279 222..521 +
1690556793.3383527-CDS-D-dudresnayi_contig10279:221..5211690556793.3383527-CDS-D-dudresnayi_contig10279:221..521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10279 222..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10279.315.1

>prot_D-dudresnayi_contig10279.315.1 ID=prot_D-dudresnayi_contig10279.315.1|Name=mRNA_D-dudresnayi_contig10279.315.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
MICSLCRCLCVSGGFRIFPCTNERFAFGVFSGRFGGVKMGLHVVLGCRRD
FHAFVFCSTSGRGCDGVSASPRLPNIFCILRNAKTRGFGVSIPSHKQAW*
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mRNA from alignment at D-dudresnayi_contig10279:94..588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10279.315.1 ID=mRNA_D-dudresnayi_contig10279.315.1|Name=mRNA_D-dudresnayi_contig10279.315.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at D-dudresnayi_contig10279:94..588+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGAGGAAACGCTCTCTGTGCGTGTGTGTGTGTGTGTTTTGTTTTCTACAA
ATCATTGGCGGAACTACAAAAGTGTATATTGGCCGTTCCGAGATATGGAC
CGGTGTTTTCAGAGCAGATAGTTGCGGGATGATTTGTAGCTTGTGTCGAT
GTTTGTGTGTCTCTGGCGGGTTTCGGATTTTTCCGTGCACCAATGAACGC
TTCGCGTTCGGGGTTTTCTCGGGGCGATTTGGCGGGGTGAAAATGGGGCT
ACACGTTGTTTTGGGATGTAGACGGGATTTCCATGCCTTCGTTTTTTGCA
GCACGAGTGGTCGGGGTTGTGATGGGGTTTCAGCGTCGCCACGCCTACCG
AACATATTTTGTATTTTGAGAAACGCCAAAACCCGGGGATTCGGCGTAAG
TATTCCCTCTCACAAGCAAGCGTGGTAGTTCTTTGAAACGATCAAGCCCC
TTGACAAATTTTGGGGCGTTTAATTGATTCCCCTTCAATTTTCAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10279:94..588+

>mRNA_D-dudresnayi_contig10279.315.1 ID=mRNA_D-dudresnayi_contig10279.315.1|Name=mRNA_D-dudresnayi_contig10279.315.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig10279:94..588+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATTTGTAGCTTGTGTCGATGTTTGTGTGTCTCTGGCGGGTTTCGGAT
TTTTCCGTGCACCAATGAACGCTTCGCGTTCGGGGTTTTCTCGGGGCGAT
TTGGCGGGGTGAAAATGGGGCTACACGTTGTTTTGGGATGTAGACGGGAT
TTCCATGCCTTCGTTTTTTGCAGCACGAGTGGTCGGGGTTGTGATGGGGT
TTCAGCGTCGCCACGCCTACCGAACATATTTTGTATTTTGAGAAACGCCA
AAACCCGGGGATTCGGCGTAAGTATTCCCTCTCACAAGCAAGCGTGGTAG
ATGATTTGTAGCTTGTGTCGATGTTTGTGTGTCTCTGGCGGGTTTCGGAT
TTTTCCGTGCACCAATGAACGCTTCGCGTTCGGGGTTTTCTCGGGGCGAT
TTGGCGGGGTGAAAATGGGGCTACACGTTGTTTTGGGATGTAGACGGGAT
TTCCATGCCTTCGTTTTTTGCAGCACGAGTGGTCGGGGTTGTGATGGGGT
TTCAGCGTCGCCACGCCTACCGAACATATTTTGTATTTTGAGAAACGCCA
AAACCCGGGGATTCGGCGTAAGTATTCCCTCTCACAAGCAAGCGTGGTAG
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