mRNA_D-dudresnayi_contig10276.312.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10276.312.1
Unique NamemRNA_D-dudresnayi_contig10276.312.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10276.312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10276contigD-dudresnayi_contig10276:4513..5489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size979
Cds size975
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.3277328-CDS-D-dudresnayi_contig10276:4512..54871622927527.3277328-CDS-D-dudresnayi_contig10276:4512..5487Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10276 4513..5487 +
1690556793.2369823-CDS-D-dudresnayi_contig10276:4512..54871690556793.2369823-CDS-D-dudresnayi_contig10276:4512..5487Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10276 4513..5487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10276.312.1prot_D-dudresnayi_contig10276.312.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10276 4513..5487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10276.312.1

>prot_D-dudresnayi_contig10276.312.1 ID=prot_D-dudresnayi_contig10276.312.1|Name=mRNA_D-dudresnayi_contig10276.312.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=325bp
ARGTSWVGIHRIQIAYNSMLGERAAVMAVALLFLKWFPRRGCSCPEANWH
NSSSQRKERHRPRPRRHGADKLSPPPPTTIVLVIASQRPTRADHFASDFP
QMGRFSSRHKTGRPRPVLREDCDFAALVHQHDGEGRWAASLAALAASGTA
LAYQRSDPDVSPNGKGGDAAGREDALHKDGGIDVQQQQSWRARRRTTTSP
TSSTGSSSSRMLGSTPPVLIYLRAQLSSHLDSLSSWSNEQCEQLRQQRTR
AHQQLVLFHEASSLSLVRCFREGGQSLNSAARGAALRTNRRASQLSELAA
EAGRRAAGVFSIVRLYGESGLRTSG
back to top

mRNA from alignment at D-dudresnayi_contig10276:4513..5489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10276.312.1 ID=mRNA_D-dudresnayi_contig10276.312.1|Name=mRNA_D-dudresnayi_contig10276.312.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=977bp|location=Sequence derived from alignment at D-dudresnayi_contig10276:4513..5489+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAAGGGGAACCTCCTGGGTGGGAATCCACAGAATACAGATTGCATATAA
TTCCATGCTGGGAGAGCGCGCGGCCGTTATGGCCGTGGCTCTGCTCTTCC
TCAAATGGTTCCCTCGACGAGGTTGCTCTTGTCCAGAAGCAAACTGGCAC
AACAGTAGTAGTCAACGCAAAGAACGGCACCGGCCAAGGCCACGTCGGCA
CGGCGCCGACAAGCTGTCACCACCTCCACCTACAACCATAGTCCTTGTTA
TAGCAAGCCAGCGACCGACGAGAGCAGATCACTTTGCCAGTGACTTTCCT
CAGATGGGGAGGTTTTCGTCGCGTCACAAGACGGGACGGCCAAGACCTGT
CCTGCGCGAGGATTGCGATTTTGCTGCGCTCGTACATCAGCACGACGGGG
AAGGGCGTTGGGCTGCTTCCTTGGCCGCGTTGGCTGCTTCTGGGACGGCG
TTAGCGTATCAGAGGAGCGATCCCGACGTGTCTCCAAATGGAAAAGGGGG
AGATGCTGCAGGACGAGAAGATGCGTTGCATAAGGATGGTGGTATTGATG
TTCAGCAGCAACAGAGCTGGCGTGCGCGTAGGCGAACGACGACGTCCCCG
ACCTCGAGTACAGGTAGTAGCAGTAGTCGCATGCTAGGCAGCACACCGCC
CGTGTTGATATATTTGCGGGCGCAACTGTCATCACATCTAGACTCCCTTT
CCAGCTGGAGCAATGAACAGTGCGAGCAGCTCCGACAGCAGCGAACAAGG
GCACACCAACAACTCGTACTTTTCCACGAAGCGTCGTCGTTGTCGCTGGT
CCGATGTTTTCGAGAGGGCGGCCAAAGTTTAAACTCCGCGGCCCGCGGCG
CAGCGTTGAGGACAAATAGGAGGGCGTCGCAACTCTCGGAATTGGCAGCA
GAGGCGGGCCGTCGGGCGGCTGGCGTTTTTTCAATCGTTCGCCTCTACGG
CGAGTCTGGTCTCCGCACCAGCGGCAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10276:4513..5489+

>mRNA_D-dudresnayi_contig10276.312.1 ID=mRNA_D-dudresnayi_contig10276.312.1|Name=mRNA_D-dudresnayi_contig10276.312.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at D-dudresnayi_contig10276:4513..5489+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAAGGGGAACCTCCTGGGTGGGAATCCACAGAATACAGATTGCATATAA
TTCCATGCTGGGAGAGCGCGCGGCCGTTATGGCCGTGGCTCTGCTCTTCC
TCAAATGGTTCCCTCGACGAGGTTGCTCTTGTCCAGAAGCAAACTGGCAC
AACAGTAGTAGTCAACGCAAAGAACGGCACCGGCCAAGGCCACGTCGGCA
CGGCGCCGACAAGCTGTCACCACCTCCACCTACAACCATAGTCCTTGTTA
TAGCAAGCCAGCGACCGACGAGAGCAGATCACTTTGCCAGTGACTTTCCT
CAGATGGGGAGGTTTTCGTCGCGTCACAAGACGGGACGGCCAAGACCTGT
CCTGCGCGAGGATTGCGATTTTGCTGCGCTCGTACATCAGCACGACGGGG
AAGGGCGTTGGGCTGCTTCCTTGGCCGCGTTGGCTGCTTCTGGGACGGCG
TTAGCGTATCAGAGGAGCGATCCCGACGTGTCTCCAAATGGAAAAGGGGG
AGATGCTGCAGGACGAGAAGATGCGTTGCATAAGGATGGTGGTATTGATG
TTCAGCAGCAACAGAGCTGGCGTGCGCGTAGGCGAACGACGACGTCCCCG
ACCTCGAGTACAGGTAGTAGCAGTAGTCGCATGCTAGGCAGCACACCGCC
CGTGTTGATATATTTGCGGGCGCAACTGTCATCACATCTAGACTCCCTTT
CCAGCTGGAGCAATGAACAGTGCGAGCAGCTCCGACAGCAGCGAACAAGG
GCACACCAACAACTCGTACTTTTCCACGAAGCGTCGTCGTTGTCGCTGGT
CCGATGTTTTCGAGAGGGCGGCCAAAGTTTAAACTCCGCGGCCCGCGGCG
CAGCGTTGAGGACAAATAGGAGGGCGTCGCAACTCTCGGAATTGGCAGCA
GAGGCGGGCCGTCGGGCGGCTGGCGTTTTTTCAATCGTTCGCCTCTACGG
CGAGTCTGGTCTCCGCACCAGCGGCGCAAGGGGAACCTCCTGGGTGGGAA
TCCACAGAATACAGATTGCATATAATTCCATGCTGGGAGAGCGCGCGGCC
GTTATGGCCGTGGCTCTGCTCTTCCTCAAATGGTTCCCTCGACGAGGTTG
CTCTTGTCCAGAAGCAAACTGGCACAACAGTAGTAGTCAACGCAAAGAAC
GGCACCGGCCAAGGCCACGTCGGCACGGCGCCGACAAGCTGTCACCACCT
CCACCTACAACCATAGTCCTTGTTATAGCAAGCCAGCGACCGACGAGAGC
AGATCACTTTGCCAGTGACTTTCCTCAGATGGGGAGGTTTTCGTCGCGTC
ACAAGACGGGACGGCCAAGACCTGTCCTGCGCGAGGATTGCGATTTTGCT
GCGCTCGTACATCAGCACGACGGGGAAGGGCGTTGGGCTGCTTCCTTGGC
CGCGTTGGCTGCTTCTGGGACGGCGTTAGCGTATCAGAGGAGCGATCCCG
ACGTGTCTCCAAATGGAAAAGGGGGAGATGCTGCAGGACGAGAAGATGCG
TTGCATAAGGATGGTGGTATTGATGTTCAGCAGCAACAGAGCTGGCGTGC
GCGTAGGCGAACGACGACGTCCCCGACCTCGAGTACAGGTAGTAGCAGTA
GTCGCATGCTAGGCAGCACACCGCCCGTGTTGATATATTTGCGGGCGCAA
CTGTCATCACATCTAGACTCCCTTTCCAGCTGGAGCAATGAACAGTGCGA
GCAGCTCCGACAGCAGCGAACAAGGGCACACCAACAACTCGTACTTTTCC
ACGAAGCGTCGTCGTTGTCGCTGGTCCGATGTTTTCGAGAGGGCGGCCAA
AGTTTAAACTCCGCGGCCCGCGGCGCAGCGTTGAGGACAAATAGGAGGGC
GTCGCAACTCTCGGAATTGGCAGCAGAGGCGGGCCGTCGGGCGGCTGGCG
TTTTTTCAATCGTTCGCCTCTACGGCGAGTCTGGTCTCCGCACCAGCGGC
back to top