mRNA_D-dudresnayi_contig10274.311.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10274.311.1
Unique NamemRNA_D-dudresnayi_contig10274.311.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: D8LIJ4_ECTSI (Pyruvate dehydrogenase E1 component subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIJ4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.370e-37
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGF GLATGAAYKDLRPVVEFMTFNFSLQAIDQI+NSAAKQLYMSAGDCPVP+VFRGPNGAASGVGA
Sbjct:   89 ITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGA 158
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A835YH27_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH27_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.430e-33
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGF GLA GAAYKDLRPVVEFMTFNFS+QAIDQ++NSAAKQLYM+AGD PVPIVFRGPNG+A+GV A
Sbjct:   85 ITEMGFTGLAVGAAYKDLRPVVEFMTFNFSMQAIDQVINSAAKQLYMTAGDIPVPIVFRGPNGSAAGVAA 154
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A7S2ME39_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME39_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.060e-33
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGF GLA GAAYKDLRPVVEFMTFNFS+QAIDQ++NSAAKQLYMSAG  PVPIVFRGPNGAA+GV A
Sbjct:  100 ITEMGFTGLACGAAYKDLRPVVEFMTFNFSMQAIDQVINSAAKQLYMSAGTIPVPIVFRGPNGAAAGVAA 169
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A2R5GV15_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV15_9STRA)

HSP 1 Score: 122 bits (305), Expect = 7.130e-32
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGF GLA G+AYK LRPVVEFMTFNF++QAIDQI+NSAAKQLYM+AG C VPIVFRGPNGAA+GVGA
Sbjct:   83 ITEMGFTGLAVGSAYKGLRPVVEFMTFNFAMQAIDQIINSAAKQLYMTAGTCNVPIVFRGPNGAAAGVGA 152
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A7S2XVY3_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVY3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.320e-30
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGF GLA GA YKDLRP++EFMTFNFS+QAIDQI+NSAAKQ YMSAGD P PIVFRGPNG A+GV A
Sbjct:   89 ITEMGFTGLAIGACYKDLRPILEFMTFNFSMQAIDQIINSAAKQNYMSAGDIPCPIVFRGPNGPAAGVAA 158
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A7S4E516_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E516_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.140e-30
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGFAG+ TGAAYKDL+PV EFMTFNF++QAIDQIVNSAAKQ YMS GD  VPIVFRGPNGAA+GV A
Sbjct:   83 ITEMGFAGICTGAAYKDLKPVCEFMTFNFAMQAIDQIVNSAAKQAYMSNGDMNVPIVFRGPNGAAAGVAA 152
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A812SWM7_9DINO (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812SWM7_9DINO)

HSP 1 Score: 117 bits (293), Expect = 4.620e-30
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGFAG+  GAA   L+PV+EFMTFNFS+QAIDQIVNSAAKQLYMSAGD  VPIVFRGPNGAA+GVGA
Sbjct:   90 ITEMGFAGIGVGAAMNGLKPVIEFMTFNFSMQAIDQIVNSAAKQLYMSAGDINVPIVFRGPNGAAAGVGA 159
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A813BYQ3_9DINO (Pyruvate dehydrogenase E1 component subunit beta (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BYQ3_9DINO)

HSP 1 Score: 111 bits (277), Expect = 4.790e-30
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGV 204
            ITEMGFAGL  GAA   LRP++EFMTFNFS+QAIDQIVNSA KQLYMSAGD   PIVFRGPNGAA+GV
Sbjct:   58 ITEMGFAGLGVGAAMGGLRPIIEFMTFNFSMQAIDQIVNSAGKQLYMSAGDINCPIVFRGPNGAAAGV 125
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: A0A0B7ACQ9_9EUPU (Pyruvate dehydrogenase E1 component subunit beta (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7ACQ9_9EUPU)

HSP 1 Score: 116 bits (291), Expect = 9.950e-30
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGFAG+A GAA   LRPV EFMTFNFSLQAIDQ+VNSAAK  YMSAG  PVPIVFRGPNGAASGVGA
Sbjct:   94 ITEMGFAGIAVGAAMAGLRPVCEFMTFNFSLQAIDQVVNSAAKTFYMSAGTVPVPIVFRGPNGAASGVGA 163
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BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Match: F0YEJ7_AURAN (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEJ7_AURAN)

HSP 1 Score: 115 bits (288), Expect = 1.660e-29
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 ITEMGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCPVPIVFRGPNGAASGVGA 210
            ITEMGFAG+ATGAAYKDL+P+ EFMTFNF++QAIDQIVNSAAKQ YM+ GD   PIVFRGPNGAA+GV A
Sbjct:   60 ITEMGFAGIATGAAYKDLKPICEFMTFNFAMQAIDQIVNSAAKQAYMTNGDFGCPIVFRGPNGAAAGVAA 129
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10274.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ4_ECTSI1.370e-3795.71Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A835YH27_9STRA3.430e-3385.71Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2ME39_9STRA9.060e-3387.14Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A2R5GV15_9STRA7.130e-3284.29Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2XVY3_9STRA2.320e-3081.43Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S4E516_9STRA3.140e-3082.86Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A812SWM7_9DINO4.620e-3082.86Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A813BYQ3_9DINO4.790e-3080.88Pyruvate dehydrogenase E1 component subunit beta (... [more]
A0A0B7ACQ9_9EUPU9.950e-3084.29Pyruvate dehydrogenase E1 component subunit beta (... [more]
F0YEJ7_AURAN1.660e-2980.00Pyruvate dehydrogenase E1 component subunit beta n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10274contigD-dudresnayi_contig10274:2718..2927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.6e-23
Seed eggNOG ortholog44056.XP_009039032.1
Preferred namePDHB
KEGG rclassRC00003,RC00004,RC00027,RC00060,RC00181,RC00496,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K09189,ko:K12599
KEGG ReactionR00014,R00209,R01699,R03270,R03875,R03938,R04866,R04867
KEGG Pathwayko00010,ko00020,ko00310,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko03018,ko04066,ko04922,ko05230,map00010,map00020,map00310,map00620,map01100,map01110,map01120,map01130,map01200,map03018,map04066,map04922,map05230
KEGG ModuleM00307,M00392
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0031090,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0042645,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098542,GO:0098588,GO:0098798,GO:0098805,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,KOG0524@2759
EC1.2.4.1,2.1.1.43
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.2758327-UTR-D-dudresnayi_contig10274:2717..27261622927527.2758327-UTR-D-dudresnayi_contig10274:2717..2726Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10274 2718..2726 +
1690556793.214508-UTR-D-dudresnayi_contig10274:2717..27261690556793.214508-UTR-D-dudresnayi_contig10274:2717..2726Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10274 2718..2726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.28656-CDS-D-dudresnayi_contig10274:2726..29271622927527.28656-CDS-D-dudresnayi_contig10274:2726..2927Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10274 2727..2927 +
1690556793.2271988-CDS-D-dudresnayi_contig10274:2726..29271690556793.2271988-CDS-D-dudresnayi_contig10274:2726..2927Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10274 2727..2927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10274.311.1prot_D-dudresnayi_contig10274.311.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10274 2727..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10274.311.1

>prot_D-dudresnayi_contig10274.311.1 ID=prot_D-dudresnayi_contig10274.311.1|Name=mRNA_D-dudresnayi_contig10274.311.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=67bp
MGFAGLATGAAYKDLRPVVEFMTFNFSLQAIDQIVNSAAKQLYMSAGDCP
VPIVFRGPNGAASGVGA
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mRNA from alignment at D-dudresnayi_contig10274:2718..2927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10274.311.1 ID=mRNA_D-dudresnayi_contig10274.311.1|Name=mRNA_D-dudresnayi_contig10274.311.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at D-dudresnayi_contig10274:2718..2927+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATCACCGAGATGGGCTTCGCGGGGCTGGCGACGGGGGCGGCCTACAAGGA
CCTCCGTCCGGTCGTGGAGTTTATGACCTTCAACTTCTCGCTGCAGGCCA
TCGACCAGATCGTCAACTCGGCGGCGAAGCAGCTCTACATGTCGGCGGGA
GACTGCCCGGTTCCGATTGTTTTCCGCGGCCCCAATGGTGCCGCTTCGGG
TGTAGGTGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10274:2718..2927+

>mRNA_D-dudresnayi_contig10274.311.1 ID=mRNA_D-dudresnayi_contig10274.311.1|Name=mRNA_D-dudresnayi_contig10274.311.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at D-dudresnayi_contig10274:2718..2927+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCTTCGCGGGGCTGGCGACGGGGGCGGCCTACAAGGACCTCCGTCC
GGTCGTGGAGTTTATGACCTTCAACTTCTCGCTGCAGGCCATCGACCAGA
TCGTCAACTCGGCGGCGAAGCAGCTCTACATGTCGGCGGGAGACTGCCCG
GTTCCGATTGTTTTCCGCGGCCCCAATGGTGCCGCTTCGGGTGTAGGTGC
GATGGGCTTCGCGGGGCTGGCGACGGGGGCGGCCTACAAGGACCTCCGTC
CGGTCGTGGAGTTTATGACCTTCAACTTCTCGCTGCAGGCCATCGACCAG
ATCGTCAACTCGGCGGCGAAGCAGCTCTACATGTCGGCGGGAGACTGCCC
GGTTCCGATTGTTTTCCGCGGCCCCAATGGTGCCGCTTCGGGTGTAGGTG
CG
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