mRNA_D-dudresnayi_contig10273.310.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10273.310.1
Unique NamemRNA_D-dudresnayi_contig10273.310.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A6H5JFY8_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFY8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.600e-27
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGWIFRKAPEDWQV 150
            +LRGGYYPRIF+PGLYNAKERFLKKFET+YYLKALPGGWIFR+APEDWQV
Sbjct:  280 KLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQV 329          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A836CP02_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP02_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.890e-20
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGWIFRKAPEDWQV 150
            ++RGGYYP++ YPGL+ AK+RF+K FE +YYLKALP GW+FR+ PEDWQV
Sbjct:  130 KVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQV 179          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: W7TLD5_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLD5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.330e-18
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGWIFRKAPEDWQ 147
            ++RGGYYPRIFYPGLYN KER L+ FE +YYLK   GG+IFRK PE+WQ
Sbjct:  206 RIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQ 254          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A4D9D5M4_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5M4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.250e-17
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGWIFRKAPEDWQ 147
            ++RGGYYPRIFYPGLY  KER L+ FE +YYLK   GG++FRK PE+WQ
Sbjct:  117 RIRGGYYPRIFYPGLYKVKERMLQYFEPVYYLKPAQGGFLFRKFPEEWQ 165          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A7S1TG32_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TG32_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 1.900e-13
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALP-GGWIFRKAPEDWQV 150
            ++RG YYP++FYPGL+  ++RFL +FE IYYLK    GG++FR  PE WQ+
Sbjct:   24 KVRGSYYPKLFYPGLHKVRDRFLCRFEPIYYLKPFSSGGYLFRAYPEPWQL 74          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A7S0ZAT4_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAT4_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 9.220e-13
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGW--IFRKAPEDWQV 150
            ++RGGYYPRIFYPGL+  K+RFL KFE I++LK    G   +FRK PE WQ 
Sbjct:  224 RVRGGYYPRIFYPGLHRVKDRFLNKFEPIFFLKQFGSGLGVLFRKYPEPWQT 275          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A2V3IVF9_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF9_9FLOR)

HSP 1 Score: 67.8 bits (164), Expect = 1.860e-12
Identity = 27/51 (52.94%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALP-GGWIFRKAPEDWQV 150
            ++RGGYYPR+FYPGL+ A+++ LK+FE IYY+K+   GG + R+ PE W++
Sbjct:  131 KVRGGYYPRLFYPGLHKARDKVLKRFEEIYYIKSFSNGGTLLRRFPEGWKL 181          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A5J4Z109_PORPP (Protein LOW PSII ACCUMULATION 3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z109_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 5.250e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGW--IFRKAPEDWQV 150
            ++R GYYPR+FYP L+  K+RFL KFE +++ K    G   ++RK P DWQ 
Sbjct:  213 RVRSGYYPRLFYPKLHQTKDRFLCKFEPVFFYKPFGSGLGTLYRKFPADWQT 264          
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Match: A0A7S0G1A8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1A8_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 1.510e-8
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPG-GWIFRKAPEDWQV 150
            ++RGGYYPRIFYP L+   ER L+KF +IY+ K+ P  G + R  P  W++
Sbjct:  122 RIRGGYYPRIFYPKLHKVAERSLRKFVSIYFFKSYPNRGTLLRAYPGPWRL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10273.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JFY8_9PHAE5.600e-2792.00DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CP02_9STRA7.890e-2068.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
W7TLD5_9STRA7.330e-1871.43DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A4D9D5M4_9STRA3.250e-1767.35DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1TG32_9RHOD1.900e-1354.90Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0ZAT4_9RHOD9.220e-1359.62Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A2V3IVF9_9FLOR1.860e-1252.94DUF1995 domain-containing protein n=1 Tax=Gracilar... [more]
A0A5J4Z109_PORPP5.250e-948.08Protein LOW PSII ACCUMULATION 3, chloroplastic n=1... [more]
A0A7S0G1A8_9RHOD1.510e-849.02Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10273contigD-dudresnayi_contig10273:143..298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog2880.D7G8C6
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2CQRD@1,2R5HU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-19_003980.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.2412913-CDS-D-dudresnayi_contig10273:142..2981622927527.2412913-CDS-D-dudresnayi_contig10273:142..298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10273 143..298 +
1690556793.2023811-CDS-D-dudresnayi_contig10273:142..2981690556793.2023811-CDS-D-dudresnayi_contig10273:142..298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10273 143..298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10273.310.1prot_D-dudresnayi_contig10273.310.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10273 143..298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10273.310.1

>prot_D-dudresnayi_contig10273.310.1 ID=prot_D-dudresnayi_contig10273.310.1|Name=mRNA_D-dudresnayi_contig10273.310.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=52bp
QLRGGYYPRIFYPGLYNAKERFLKKFETIYYLKALPGGWIFRKAPEDWQV
G*
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mRNA from alignment at D-dudresnayi_contig10273:143..298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10273.310.1 ID=mRNA_D-dudresnayi_contig10273.310.1|Name=mRNA_D-dudresnayi_contig10273.310.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at D-dudresnayi_contig10273:143..298+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGCTGCGAGGCGGATACTATCCGCGCATCTTTTACCCCGGTCTGTATAA TGCCAAAGAGCGGTTCCTGAAAAAGTTCGAGACCATTTACTACCTCAAGG CTCTGCCCGGCGGATGGATCTTTCGAAAAGCGCCAGAGGATTGGCAGGTG GGTTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10273:143..298+

>mRNA_D-dudresnayi_contig10273.310.1 ID=mRNA_D-dudresnayi_contig10273.310.1|Name=mRNA_D-dudresnayi_contig10273.310.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at D-dudresnayi_contig10273:143..298+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGCTGCGAGGCGGATACTATCCGCGCATCTTTTACCCCGGTCTGTATAA
TGCCAAAGAGCGGTTCCTGAAAAAGTTCGAGACCATTTACTACCTCAAGG
CTCTGCCCGGCGGATGGATCTTTCGAAAAGCGCCAGAGGATTGGCAGGTG
GGTTAACAGCTGCGAGGCGGATACTATCCGCGCATCTTTTACCCCGGTCT
GTATAATGCCAAAGAGCGGTTCCTGAAAAAGTTCGAGACCATTTACTACC
TCAAGGCTCTGCCCGGCGGATGGATCTTTCGAAAAGCGCCAGAGGATTGG
CAGGTGGGTTAA
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