mRNA_D-dudresnayi_contig10269.308.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10269.308.1
Unique NamemRNA_D-dudresnayi_contig10269.308.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10269.308.1 vs. uniprot
Match: A0A6H5KA25_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA25_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.120e-8
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  358 SDVPNTVIYNGQTLTFGDYRRPSIAERAAITLATFGAIAWK 480
            SDVPNTV YNG+TLTFGDYRRPS+ E   + LA  G + WK
Sbjct:   82 SDVPNTVDYNGETLTFGDYRRPSLLESCVLALAAVGPVGWK 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10269.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA25_9PHAE8.120e-865.85Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10269contigD-dudresnayi_contig10269:1541..3341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.1134522-CDS-D-dudresnayi_contig10269:1540..16331622927527.1134522-CDS-D-dudresnayi_contig10269:1540..1633Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10269 1541..1633 -
1690556793.148444-CDS-D-dudresnayi_contig10269:1540..16331690556793.148444-CDS-D-dudresnayi_contig10269:1540..1633Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10269 1541..1633 -
1622927527.122435-CDS-D-dudresnayi_contig10269:2948..33411622927527.122435-CDS-D-dudresnayi_contig10269:2948..3341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10269 2949..3341 -
1690556793.1558576-CDS-D-dudresnayi_contig10269:2948..33411690556793.1558576-CDS-D-dudresnayi_contig10269:2948..3341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10269 2949..3341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10269.308.1prot_D-dudresnayi_contig10269.308.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10269 1541..3341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10269.308.1

>prot_D-dudresnayi_contig10269.308.1 ID=prot_D-dudresnayi_contig10269.308.1|Name=mRNA_D-dudresnayi_contig10269.308.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=162bp
MHGLWSTTTTVQHLSMSPSCCVNINNYYCCSASSVGTALRRRSCPSMLAP
LPARRTTPTPTQQLRPRCYSSVLFMVGGGAGDGPPACTTTSSSSNSISAG
RGGVVAVDAITTSPQTRRSSDVPNTVIYNGQTLTFGDYRRPSIAERAAIT
LATFGAIAWKAV
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mRNA from alignment at D-dudresnayi_contig10269:1541..3341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10269.308.1 ID=mRNA_D-dudresnayi_contig10269.308.1|Name=mRNA_D-dudresnayi_contig10269.308.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1801bp|location=Sequence derived from alignment at D-dudresnayi_contig10269:1541..3341- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGGTCTGTGGAGCACCACCACCACCGTGCAACATCTTAGCATGTC
GCCGTCCTGCTGTGTCAACATCAACAACTATTATTGTTGTTCAGCTTCTT
CAGTAGGCACGGCGCTGCGAAGGCGTTCTTGCCCTTCCATGCTTGCACCC
CTGCCCGCCCGAAGAACAACACCAACACCAACACAGCAGCTACGTCCACG
GTGCTACTCTTCGGTTTTGTTTATGGTGGGCGGTGGAGCGGGCGATGGAC
CGCCAGCATGTACCACTACCAGCAGCAGCAGCAACAGCATCAGTGCTGGC
CGTGGCGGGGTGGTTGCAGTAGACGCAATAACAACGTCTCCACAAACTAG
GAGGAGCAGCGACGTGCCGAACACGGTGATCTACAACGGCCAGGTATGGC
TGTCTACTATTGTGGATCTCATATAGTGGATACCCCGTACATATAGCTCT
AGTCCTAAGTGGAGTATCTACAACTGACTACGTAGAGATGTCGAGATGGC
TCTATGATTCTGTGCGGGTTGGTGGCGCTGTTGGGTCACTACCACCACCG
TCACGGCGTATCCCCTGGCTGACTCCCGGAGCAGTTTCAGATTTGGAAAG
CCACACGCACGGCTGACGTATCGTATAATAGTAAAACTAACAAACGACAA
ACGTAGCGCTGCTTTTGCGTTTAGTCTAATTACGATACAACAACAGACAC
CAACTACAGTAGTGAGTAGTATTCCCGCCTGGTATAACATAATGCGAGGT
GTGGCATCACAATGCTCGTGAAAAACATGAACATTGAACGTGACCTTAAC
ATGACTCATAAAAACGTACCAAAACACGTGATGGACGGCTTACTTCAATC
GAAGTGCCTTCTTGACGGTACAAGTAGAGTGCTCCGCTCCTGGCAGATGA
CGAGGGGATGACGAGGGTGGGAAATGTGCAGTAGGATGGTGGAATAGATT
ACAGACGTGTGTTGTTGCTTTGGAGGAGAGATTGATGCTGCAGTATAGTA
CAGTAGTAGTTTAATTTTGGATGTGTCCTGAACTCTGTTGAACTTAAGCG
AAGGTGTTTGAGGGTGGGTGGTACACCATATCATACAAAATTTTATACCG
TAGGAGTGACGTTGTGGTCTGGTGGTTTGGTGGTCGCCCCTGTTGGTGGA
AGTTCGGGGTTCGATTCCCGGTGAAAACACGAAATCCCAATTTTCTGGGC
CATCTTCTGTCGCGGAAACGCGAGAGCGTGAGTAAACACAATTCGATGAA
AGTCGACGAGCTACGAGAGCGCCGAACCCTGTACGCGACCAAAAGCGAGG
CATGTACCGGGGGTGGGGGATAGACACCTGTACCCCCGGCTTGCTCAGAT
AGGCGCGCTGCGCGATGAGAACAAGAGCTGTTGTGAGCTGGACTGGGAAG
TCCCAGTGATGAAGAAAAACAATAAAATAAAAACTGCAGTACAAGTAGTA
TTAATAGTACGTAAAGTAAGCAGGGGCCGTGCTCTCTGACAAACATATTA
ACGACAGTCTCAGCCGTATAGGTGTGCTACACGTACAGCCGGATGGGTCG
CTTCCCACATTGGTTTAAACTTGAAGACTTCCAACGCTGCAATGCACTTA
CTGTACTGCATGCACTGCTTACTCGTGTAAAACAACAACGACAACCATTG
TACAACAACACTGGATGACAACAATAACCACCACCACCGCCATCGTCGCT
CCTCACAGACGCTCACCTTCGGCGACTACCGCCGACCGTCAATCGCCGAG
AGGGCCGCCATCACCTTGGCGACGTTCGGCGCGATTGCGTGGAAAGCCGT
C
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10269:1541..3341-

>mRNA_D-dudresnayi_contig10269.308.1 ID=mRNA_D-dudresnayi_contig10269.308.1|Name=mRNA_D-dudresnayi_contig10269.308.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at D-dudresnayi_contig10269:1541..3341- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGGTCTGTGGAGCACCACCACCACCGTGCAACATCTTAGCATGTC
GCCGTCCTGCTGTGTCAACATCAACAACTATTATTGTTGTTCAGCTTCTT
CAGTAGGCACGGCGCTGCGAAGGCGTTCTTGCCCTTCCATGCTTGCACCC
CTGCCCGCCCGAAGAACAACACCAACACCAACACAGCAGCTACGTCCACG
GTGCTACTCTTCGGTTTTGTTTATGGTGGGCGGTGGAGCGGGCGATGGAC
CGCCAGCATGTACCACTACCAGCAGCAGCAGCAACAGCATCAGTGCTGGC
CGTGGCGGGGTGGTTGCAGTAGACGCAATAACAACGTCTCCACAAACTAG
GAGGAGCAGCGACGTGCCGAACACGGTGATCTACAACGGCCAGATGCATG
GTCTGTGGAGCACCACCACCACCGTGCAACATCTTAGCATGTCGCCGTCC
TGCTGTGTCAACATCAACAACTATTATTGTTGTTCAGCTTCTTCAGTAGG
CACGGCGCTGCGAAGGCGTTCTTGCCCTTCCATGCTTGCACCCCTGCCCG
CCCGAAGAACAACACCAACACCAACACAGCAGCTACGTCCACGGTGCTAC
TCTTCGGTTTTGTTTATGGTGGGCGGTGGAGCGGGCGATGGACCGCCAGC
ATGTACCACTACCAGCAGCAGCAGCAACAGCATCAGTGCTGGCCGTGGCG
GGGTGGTTGCAGTAGACGCAATAACAACGTCTCCACAAACTAGGAGGAGC
AGCGACGTGCCGAACACGGTGATCTACAACGGCCAGACGCTCACCTTCGG
CGACTACCGCCGACCGTCAATCGCCGAGAGGGCCGCCATCACCTTGGCGA
CGTTCGGCGCGATTGCGTGGAAAGCCGTCACGCTCACCTTCGGCGACTAC
CGCCGACCGTCAATCGCCGAGAGGGCCGCCATCACCTTGGCGACGTTCGG
CGCGATTGCGTGGAAAGCCGTC
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