mRNA_D-dudresnayi_contig10265.306.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10265.306.1
Unique NamemRNA_D-dudresnayi_contig10265.306.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10265.306.1 vs. uniprot
Match: D7G394_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G394_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.420e-23
Identity = 62/112 (55.36%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:  319 AVAAPGERFDPADLLALSGANADVGNWAVCLDVLETAKEVSRVARIAVTAKSNELLLAKD----------------GLGLASWRATAARSSKVTARAKEAACALRGCYEGAV 606
            A AAPG+RF P DLL L+  +AD G W+ CLDVL TA+EVSR AR AV AK+NELLL +                 G GLASWR  AA +S+ T RA EA+ ALRGCYE AV
Sbjct:   55 AAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVVGNVGATTGVAGAGLASWRQVAAENSEATERADEASKALRGCYESAV 166
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BLAST of mRNA_D-dudresnayi_contig10265.306.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.760e-21
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:  319 AVAAPGERFDPADLLALSGANADVGNWAVCLDVLETAKEVSRVARIAVTAKSNELLLAKD----------------GLGLASWRATAARSSKVTARAKEAACALRGCYEGAV 606
            A  APG+ F P DLL L+  +AD G W+ CLDVL TA+EVSR AR AV AK+NELLL +                 G GLASWR  AA++S+ T R  EA+ ALRGCYE AV
Sbjct:  666 AAVAPGDHFQPLDLLCLAAFHADNGAWSECLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGNVGATTGFAGAGLASWRQVAAKNSEATERVDEASKALRGCYESAV 777
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10265.306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G394_ECTSI6.420e-2355.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYW8_9PHAE3.760e-2152.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10265contigD-dudresnayi_contig10265:4009..8271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size609
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10265.306.1prot_D-dudresnayi_contig10265.306.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10265 4287..8271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.0232584-UTR-D-dudresnayi_contig10265:4008..42861622927527.0232584-UTR-D-dudresnayi_contig10265:4008..4286Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10265 4009..4286 +
1690556793.1138344-UTR-D-dudresnayi_contig10265:4008..42861690556793.1138344-UTR-D-dudresnayi_contig10265:4008..4286Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10265 4009..4286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.0355911-CDS-D-dudresnayi_contig10265:4286..45041622927527.0355911-CDS-D-dudresnayi_contig10265:4286..4504Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10265 4287..4504 +
1690556793.124466-CDS-D-dudresnayi_contig10265:4286..45041690556793.124466-CDS-D-dudresnayi_contig10265:4286..4504Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10265 4287..4504 +
1622927527.0455234-CDS-D-dudresnayi_contig10265:8159..82711622927527.0455234-CDS-D-dudresnayi_contig10265:8159..8271Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10265 8160..8271 +
1690556793.1317847-CDS-D-dudresnayi_contig10265:8159..82711690556793.1317847-CDS-D-dudresnayi_contig10265:8159..8271Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10265 8160..8271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10265.306.1

>prot_D-dudresnayi_contig10265.306.1 ID=prot_D-dudresnayi_contig10265.306.1|Name=mRNA_D-dudresnayi_contig10265.306.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=110bp
MTPKNRGFPSIHRGGSRSGGAVRPGGPACPVGSKRRRGQLGRVPGRLGDS
QRSQPSGPHCRHRQEQRTSPRERWFRAGVLASDRRKKLESDGARQGGSVR
SERVLRRSGG
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mRNA from alignment at D-dudresnayi_contig10265:4009..8271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10265.306.1 ID=mRNA_D-dudresnayi_contig10265.306.1|Name=mRNA_D-dudresnayi_contig10265.306.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4263bp|location=Sequence derived from alignment at D-dudresnayi_contig10265:4009..8271+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAAAAGTCAAAACCTCTCTTAACGATCCGTCCTAAAAAAAGACGCTGTAA
ACCTACTGAAGACGACGGAGCACGGATTGCCTCAACGGTGGTAAAATTGT
CTCTTGCCTTCTTCTGGCACGGTACCTCATCCGACGACAATATCATCATA
CTTCGTACACAATTAGTATTCAGGTGTTCTACCGAGAGGCGCGTTAGTGT
CTCTGTTTAGCGTTGTTATACGGGACGGGCCTTTAATAATAGATGTGTCA
GTTTTATTATTAATAGACGACCTAAAATATGACACCGAAAAATCGCGGTT
TTCCGTCGATCCACAGAGGCGGTAGCCGCTCCGGGGGAGCGGTTCGACCC
GGCGGACCTGCTTGCCCTGTCGGGAGCAAACGCCGACGTGGGCAACTGGG
CCGTGTGCCTGGACGTCTTGGAGACAGCCAAAGAAGTCAGCCGAGTGGCC
CGCATTGCCGTCACCGCCAAGAGCAACGAACTTCTCCTCGCGAAAGGTGC
GGTCGTCTTCGCGACATTCGTTCGTTCACACCAGCAGGGTTATAAAAAAC
CTTACCTAATACTTTTGAGCCAGGCACGTTTGCGATAAGCACGTTGGGTT
GGGTTGGGTTTATGGTCTACCACTTTGTCAACGATTCTTTCAATTTTCGG
TTGATTTTCGTCGATTTTATCCACAGCAGGCAAAAGGAATTTTTTCCCCT
AAGAAATATTCAGCCAGTTTTTTTTAACTGTGGGGCTGGCGGTTTCTACC
GTGCGTGGTACTGTTTTAAATGGGCAAGATGCACGGATGTTTATCGTGTT
TCGTGGACTCGTCTCAGTCTATACACAACGGGAGAAAAAAATTGTTAGGT
AAAGTGTATGTGTGTAGACAAGTGACATTGGGCTTTGGGTTGGGTTGGGT
TGGGTTGACGTAGTGGTTACCTTGTCCTGTGTAGCTGCTGTGTACGGGTA
GTGCTGCTGTGGTGGGTTTGGTTGTAATTGCGCTGTCTTCGGTTTATGTT
TTGGTTGAGTTGGGATGTGATCTGTGTTGTTATAAATGGGAAACGCTATA
AAGTGCAGTACATCTTTTAGCGCTTTTCAGAGAGCATTTTTTTTGGAAGG
CTATTACTCAGGGGGTCATTTCGGTTTTTTTAGTTAGTTGTAGAAAATTC
TTCCATGACAGCATTTTCTGTAACCCACGTATCCATACTATTAGGTGCAA
TAAAATCAAAATACACGAGATCCCTCTATTAATAGAAAAGTTCTAATACT
ACCTCAGGAAATATGTAGGGCCGGAGTAGATATCAATACGGAGGAGCGTA
GTAGAAAAACAGGACCAAACGTATGACTGCTACATGTAGAAAAAGGCTTA
CCCACTATAGGTACAACAACCTGCACCTACGGCCTACGGAGCAGTGTAGC
AGAGTGGAGGATACAAATGGGTAGGTTCTGCTTTCGGGATCCACGGTTGT
TTTTTTTTTGTTTTTTTTGTTTTCGTCCCACTTATTTTCTCAGCCCTATT
CCTCTCGTAACTTTAGATCCAGGGTCACATAACAGGCGACCCTTCCTCCC
CCCGTTCCCCCTACGGTACGTGCGTACGTTTTTATCGCGAGAAGGGTTGC
AGCACTTTCGTCCCCCTCGTGGACACTTTCATCGAATTGGACAACCGTAG
AACATCCATACAGGACAGGCTCCCTTCTTATAGTACTTCGAAGTTCTGCA
GTACAGTAGTTTAAAACGTAATATATATGCTCGTAGTGAGCCTCCCCCTT
AACATACCTAACTATCGACCGGATCTTTAAGGATGTTCGTTTTGTTATAC
TAATCGTATAATACCAAACGTGGGCTATTTAGCGGTTCGGAACAGTTTCT
AGAGCTGACCCGTCAATCTTACCCTAACGACCACACGGATATTAAAACGG
ACCGAAAACCCCCCTAAAGATTATGTCGATACTTCGGACGTATACTATTT
GGTGTGTTAATAGCTGCCGGATATCATAATAGAGTTGTCTGTCGCGTGGG
GACGTGGTTGGTTAGGCTGGTCTACTTTTTGGATTTGTGGTTTGGTCAAT
AGCATCAGCTAATGTTGTATATAGGACGGAACCATACAGGAACTTTACAG
ATTTCTGACTCGATATTAGTATGGGTGTGTTCGTGTGTCCGTTAGGGTTT
GAGTTTAGGGTGAGTGGTAGATATTTTTCCGAAACTTCTTGCACAGCCCA
CGTTGGTTCTAATCATACGCCTAAAAATACGAACATCCTAAAGACTTGTC
CTACAAAAAAAGCGCTACGGCGGCTCCGTTTGGTCTTGTTTTAGTATCAT
AGTTCCCTCTGCGATTGGTCTGTACGACCTTGGCGAGCAGTGTTTTACCG
ATTCTTGGAAAAAAAAAAATGGTTGATACACACTGCGTACGACACAATAG
CAATCTAGGTGTCATTCGGTTAGCGTGATGCAGTTAGGGTTAGCTACACA
GAGTTAGTCCCCTTTGGTGTTATGCAGTACTACTGTATATATATATATAT
AGACATATATATATTTCCGTCCCATTTATTATCTTTGTCCTATTCTTTCT
CTAGCTCCATCTCTCTTCGTTACTCAGATCCGGGGTCACATAGTAGGCGC
TTCTCCCGCCTTCCCACTACGGTACGTGCCTACATTTTTTATCGCGAGAA
GAGTGCGGCACTTTCTTCCCTCGTCGACTTTCATCGCAGTGTGCTTACTC
ACGCTCTTCTCGCGTTTTCCGCGACGGAAGATGGCACAGAAAAGTGCCAC
CGGGAATTGAACCCCCAACTTCCGCCAACAGAGGCGAACACTTAAGCCAC
GTAGACCATCGCGCCACCCCTGTTGATACCGCAAATATCAACCATTTTTT
CGAGGAATTGGTGTATACAACACTCATCCTGGAGACACAGGTGCGTGCAT
CTGACGCAACGTCGTTCGGGCGGCCACACAGAGTTGAAATGGAAACGCTA
GAAGTAGGGCCGGACACGACGTGATAGTATGGTTGTCCGACGGGTGTTTG
CCGAGAGAGAGAAGTGTCTGGTAAAAAGAGTGGATGACGAAAAACAAATC
GTCCATACTATCATACGAGTATGTACGGTACTGCACCACGCTTTGTGTTT
CCTGCAGTATGGTGTGAAGGCGGTACTACAGTAGTAGGTAACCCTTTACA
TTTCTATCGACGCGATCTGTAGGGTTGCTTCGTTTTATTATTATTTTAAC
TTACAAATAGATAGAATCAGCCGTGACGTTCCAAATTGGTTCGGGGACCA
GGGGATAATGGTCAACCTCACTGTGTGATACATCGGTCGCGCGGGTTCTA
TCGGTCCTCAGATAAGTTGTAACGCAGCGGCTCTTTTATTACGTAATACT
GGTGCCAACAATGTGGGGTGCTGTTCAGCGGTTCGGAACAATTTCTGGAA
CGCACCCTGAGCCCTAACCTAGCGACCACGCCATAACAGCAGCAAGTAAA
AAGCCTCCCTGGAGATCTGGTCGATAACTGTTAAGGTGTGAAAATACTAC
TGTCGTTTGTTTTTTTTTGGCGGGCGGTCTGACTTCCGTATGGACACCCC
ATCCATCCATCCCACTACTGTTGTGCTACGCACTGTCGATGTATTTCGCT
GTTTGGCGGGTGGGATCCTTGTCAATAAAGTAGAGAAACTGCGTTCGGCC
TTTTTTGCGGTATTGTAGACTTTACAACGTGTTCGATAATCGAGGGCTGT
TTTTTTTTTTCTTTTTGCTTTACTTGCTGTTAGTATGGTGTGCTCGTTAG
AAAATGTTCTGAACTGCTGTTTTTTACTTGCTGTTAGTATGGTGTCAGGG
TTAGTTGTAGAAAATGTTCTGAACTGCTGAACAGCCTACGTTGGTATACT
ATTAATATTTTATTACTGTAGTATAATAAAACGAATATCCTAAAAGATTC
AGATTCCCCGGAATAGATTGTAAAGTAGGGGTCACTCTTTTTTTTTGCCT
TGTCGAATGCAAACGCTGTGCGGAGCTCGTCGTAGAATAGGGGTTCGTCA
AGTTCTTCTCGTCCGTAGAGACAACTTCCCGAACCACCAACTAAGCGAGT
TTTTTTTTGTCTTGTTTTTGTTTTTCAATTGTCCTGATCCAATCCAACCC
GCTCCGCTCCGCTGTTTTGCCAAATAAAAAACAAAAACAAAAACAAAAAA
GATGGTTTAGGGCTGGCGTCTTGGCGAGCGACCGCCGCAAGAAGCTCGAA
AGTGACGGCGCGCGCCAAGGAGGCAGCGTGCGCTCTGAGAGGGTGCTACG
AAGGAGCGGTGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10265:4009..8271+

>mRNA_D-dudresnayi_contig10265.306.1 ID=mRNA_D-dudresnayi_contig10265.306.1|Name=mRNA_D-dudresnayi_contig10265.306.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at D-dudresnayi_contig10265:4009..8271+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACACCGAAAAATCGCGGTTTTCCGTCGATCCACAGAGGCGGTAGCCG
CTCCGGGGGAGCGGTTCGACCCGGCGGACCTGCTTGCCCTGTCGGGAGCA
AACGCCGACGTGGGCAACTGGGCCGTGTGCCTGGACGTCTTGGAGACAGC
CAAAGAAGTCAGCCGAGTGGCCCGCATTGCCGTCACCGCCAAGAGCAACG
AACTTCTCCTCGCGAAAGATGACACCGAAAAATCGCGGTTTTCCGTCGAT
CCACAGAGGCGGTAGCCGCTCCGGGGGAGCGGTTCGACCCGGCGGACCTG
CTTGCCCTGTCGGGAGCAAACGCCGACGTGGGCAACTGGGCCGTGTGCCT
GGACGTCTTGGAGACAGCCAAAGAAGTCAGCCGAGTGGCCCGCATTGCCG
TCACCGCCAAGAGCAACGAACTTCTCCTCGCGAAAGATGGTTTAGGGCTG
GCGTCTTGGCGAGCGACCGCCGCAAGAAGCTCGAAAGTGACGGCGCGCGC
CAAGGAGGCAGCGTGCGCTCTGAGAGGGTGCTACGAAGGAGCGGTGGAAT
GGTTTAGGGCTGGCGTCTTGGCGAGCGACCGCCGCAAGAAGCTCGAAAGT
GACGGCGCGCGCCAAGGAGGCAGCGTGCGCTCTGAGAGGGTGCTACGAAG
GAGCGGTGGA
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