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Homology
BLAST of mRNA_D-dudresnayi_contig10261.304.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI) HSP 1 Score: 149 bits (377), Expect = 7.120e-38 Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 154 TVDAQGEKRKGEKGAKDAERKRKDLETLKKKTGKAEAEFEPLLKKAHEVLGAFETAEKDVKTKTEELHEISAKYEKAKVEEDKIRGVLVDISHQLDEYAKTISDNKRKAKHWSSELKELRRTHKKEAEEWGLEEE 558
TV+ +GE++KGEK AKDA+RK K+LE +++K KA+ F + +KA EVL AFE AE +V TK EEL EI+ YEKAK DKIRGV VDISHQL EYAK+I++NK K KHW+ ELK+LR+ HKKEAE+WGLE+E
Sbjct: 948 TVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKVHKKEAEDWGLEDE 1082
BLAST of mRNA_D-dudresnayi_contig10261.304.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.570e-19 Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 184 GEKGAKDAERKRKDLETLKKKTGKAEAEFEPLLKKAHEVLGAFETAEKDVKTKTEELHEISAKYEKAKVEEDKIRGVLVDISHQLDEYAKTISDNKRKAKHWSSELKELRRTHKKEAEEWG 546
G+K AKD +K +LE ++++ AEF L + A V+ A+ET + + EL + +AKYE+ + KIRGV VDI+HQL+EYA T+SDN+ KAKHW +EL +LRR H E EWG
Sbjct: 907 GDKSAKDGAKKEAELEGVRERLKGVAAEFAALEEAAFAVMTAYETTREAADARKAELEKATAKYEECRARVAKIRGVEVDIAHQLEEYATTLSDNETKAKHWRAELAKLRRLHAAEHAEWG 1027
BLAST of mRNA_D-dudresnayi_contig10261.304.1 vs. uniprot
Match: A0A8J2SP08_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP08_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 4.310e-5 Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = 1
Query: 25 EAVVQALQKAILEVGGERLKKAVKRADAASKGLDEAMEALNRVTVDAQGEKRKGEKGAKDAERKRKDLETLKKKTGKAEAEFEPLLKKAHEVLGAFETAEKDVKTKTEELHEISAKYEKAKVEEDKIRGVLVDISHQLDEYAKTISDNKRKAKHWSSELKELRRTHKKEAEEW 543
+A VQ L+ A+++ GG+ L+KA+ +A+ + D+A + + V + ++ D LK+ ++ E E + + EVL A A++ + L A+ E + D I+ V VDI +Q+D+YA+ + DN +K K + LKELR H E ++
Sbjct: 841 DAEVQELRAAVVDAGGDPLRKALAKAEICRQLADDASNEVESIAVQVKAAEKALXXXXXXXXXXDADATRLKEDVDGSQEELERIAAEKDEVLQAKVQAQQACDSAANALSVKKAELETLSQDADAIKAVEVDIQNQVDDYARALKDNGKKQKQCDALLKELRAEHAAEVRDF 1013
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 151.0 |
Seed ortholog evalue | 6.6e-34 |
Seed eggNOG ortholog | 2880.D8LQ01 |
Preferred name | SMC4 |
KEGG ko | ko:K06675 |
KEGG Pathway | ko04111,map04111 |
GOs | GO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837 |
EggNOG free text desc. | chromosome condensation |
EggNOG OGs | COG1196@1,KOG0996@2759 |
Ec32 ortholog description | P-loop containing nucleoside triphosphate hydrolase |
Ec32 ortholog | Ec-15_001470.1 |
COG Functional cat. | D |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko03036 |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 664 |
Cds size | 660 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10261.304.1 >prot_D-dudresnayi_contig10261.304.1 ID=prot_D-dudresnayi_contig10261.304.1|Name=mRNA_D-dudresnayi_contig10261.304.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=220bp
VSASLEKAEAVVQALQKAILEVGGERLKKAVKRADAASKGLDEAMEALNR VTVDAQGEKRKGEKGAKDAERKRKDLETLKKKTGKAEAEFEPLLKKAHEV LGAFETAEKDVKTKTEELHEISAKYEKAKVEEDKIRGVLVDISHQLDEYA KTISDNKRKAKHWSSELKELRRTHKKEAEEWGLEEEAVGSDDDDEGGDDD GEDGGDVSEGQEGVDGGVEE back to topmRNA from alignment at D-dudresnayi_contig10261:695..4759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10261.304.1 ID=mRNA_D-dudresnayi_contig10261.304.1|Name=mRNA_D-dudresnayi_contig10261.304.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4065bp|location=Sequence derived from alignment at D-dudresnayi_contig10261:695..4759- (Desmarestia dudresnayi DdudBR16 monoicous) GTTTCCGCGTCGCTCGAGAAGGCCGAGGCGGTTGTTCAGGCCCTGCAGAA
AGCTATCCTGGAGGTCGGCGGGGAGCGGCTGAAAAAGGCTGTCAAGAGAG
CTGATGCGGCCTCCAAGTGAGTTTGTCAACAAAAAACAAAAAACACACGC
TCAAAACACACAACCAAGGCCACTTCTATTTTTTTTTATCCTCCGGCGGA
TGGGTAAATCTTTAGAGTCTCGTTTACCAGTTAGACGAAAACTACGGTTG
ACACAGCTTCTTTTTTGTTTTGATTTCAATTTGTGCCGAGCCGACCCAAC
CCGACCCTACCCCTAACCCTAACCCCAACCACCCACGGTACTATTAATTC
TACGGCACAGTTAGCACGACCAAAATCGACGCCTTCGGCGCTGAAAACGA
GGAAGCGTGGGTCTTCATTCTGTGTGGCTCTTGAATCGAGACTGTTGCTG
TGTGGCTAGAAAACTCTTGGAATTTGTTTATATAGAGTTTGTATTGTCAA
CCATAGTTTTCACTACTGAATCTTTACGCGACGCGTAGGCTCCACATAAT
TTCCACGGTTGAGCTTTTTTATTTTTTAAGGTTCCCTCTCTTGTTTTAAG
CTCTTCTTTGTGTTTTCAAGCATGTTTTACCGGTTTATGTTGCCGATTCC
CTCCAAGTGAGGTTGCAAAACACACGCAAACACTCGAAGATCAAGACCAC
AACCACGAACATCTTGTGGAGCACCACGTTGCCTTTTACGGCGCGAGAGT
CTCGGAGGCCGTAGGGCCTGAACGTAGAGCCACCCGGAGAGGCAACGTTG
AACGTCGTCCCTCAGAGAGGGCTATAGTGTAGGACGTGCCGAAGCTCGCG
CATTATTAATGCGGAGGCCCATATCAACCATTGTAGGCCCAAAACAAGGT
GAAAAAGGGCGACCACAAGTATTCTTATTTCCGCCCCCCCCCCTCCCCCC
CCCCCCCCCCGAAGAATGAAAATGTAGCATCGTTGATAAAGTCTACTACT
GCACTGCATTATTAAAACGAACGAGATCCGCGGTTCACGCCGCGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCGCGATACACACG
TCAATATAAGCGTTTTTGGCCTATTTATTAGGGGTAGGGGCCCTCGTGAT
ATGTGTACTTGTCTATCTGTTTGTGGAGAAGGGGAGAAAATCGGCGGGGT
CGGTGTAAACGGGTGTCTACCTTTGTGACCCCTGGGTCCCGAGAGATCGG
GCTAATGCAATGGAATTAACGATAATAAAGAGATAGCGATAACCTGTAAC
AGGATCTGTATACGAAGTAGGGGAATATTTATTATATGATACACTATGAC
AGAGACCCATTACAAATAGGCCCAAAACAGCGTGAAAAAGCGGAAGCGAA
CATCCTTCCCGACCTCCCCCCCCCTTGAGAATGAAAATTTAGCATCGTTG
ATAAAGTCTACTGCCGCACCGCATGATAGAACCGACCGAGATCCGTGATT
TACGCCGCGTCGAGTCTCGCGATATACACGTCAATATAAGCGTTTTGGGC
CTATTTATTAGGGGCCCTCGTGATCCTGTCCTCCACAACCGTTAAGGTTT
CGAAGAAAAAGTGGCGTTTGCTCTCGATGGCGGTCGTTGTTCCGACCCTT
GTGGAGGTGTAGCAAGAGACACACGCACGACACACGAAAAAGTCCCAGTC
CTCGCGAGCAGCAAATCAAAACTAAAATGGGACAGTCGGCTAAACTATAT
ATGAAGCGGGAAGTACAAACCGCGCGCTGCCTCTGTTTTATCAGTAGTTT
TTTTTTTTTTTTGCTTCTCTTTTAGGCTTGCTTTTTTGTTTTGTCCCGTC
TTATTTTGCCATATCATGCGTACCATGGTGGTACCCTTTTTGTTGCTATT
GCGTGCCATATCATACGTACCACTATCGTACCCTTTTTGTGCTGTCCCGT
CTTATTGCGCCATATCATACGTACCATAGTGGTACCCTTTTTGTTTCTTC
CCGTCCTTCTGTGCCATATCATACGTACCATGATGGTACAGTACCCTTTT
TGTTGCTGTTTTTTGTGTGTCTTGTCTTTTCGGCCTGCTTTCTTGATTTG
TCCGTCTTATTGTGCCATTTCAGATGATAACGTACGATGATGGTACCCTT
TTTGTCGTCGCTGTTTTTGTCTGTTGTAAGGGGCTTGGACGAGGCCATGG
AGGCGTTGAATCGCGTGACGGTGGATGCACAGGGGGAGAAGAGAAAGGGC
GAGAAGGGTGCCAAGGACGCCGAGCGTAAGCGTAAGGACTTGGAGACTTT
GAAGAAGAAGACGGGCAAGGCCGAGGCGGAGTTCGAGCCTTTGTTGAAGA
AAGCCCACGAGGTTAGTGGTATGGTATGGTATGGTATGGTATGGTATAAC
TACCAGACGTTTTTAAAATGACAGACAAGGCGGAATCGGAGTTCGTTCCT
TTGTTGGTATGGTGTGGTGTCTTTTAAAGTAACAATAATGATGTGATATG
ATATGATGTGATAATTACCAGACTTTTTGAAGAAGACGGACAAGCCGGAA
TCGGAGTTCGATCCCTTGTTGGTGTGGTATGGTATGATATGATATTGATA
TGATGTGATGCCTACTACTGTAGACATTTTGAAGAAGACGGACAAGCCGG
AACGGACAAGCCGGAATCGGAGTTCAATCTTTGTTCGAGAAAGCCCACAA
GGTTAGGGGGATGGTATGATATGGTATGGTATAGTATGGTATTAACATCG
TATGATATGACACGATCTGACATAATATGATATATCACATGTATGAGTCC
TTGTGTGTGGGTTTCGTAGGTGCTGGGGGCGTTCGAGACGGCGGAGAAGG
ACGTGAAGACCAAGACGGAAGAGCTTCACGAGATCTCCGCAAAGTACGAG
AAGGCGAAGGTGGAGGAGGACAAGATTCGTGGGGTGCTGGTCGACATTTC
ACACCAACTTGACGAGTACGCCAAGGTAGGGAGAGGTTATTGTAGATGTT
GTTTTTACGTTATAATTACCCTTTCTGCCCTACGATACCCAGTAAACGTA
CTCATAGTCTACTGGTTCTTCCATCCTGCGATAGAGAGACGCGACTTTCC
TTGGTCACAAGGTGCATAGTAGCACCAAATCGCAAATAGTAGGGGTGAAA
ATGATTGTTCTTTTATTGTTTGTTTTTTAGGGAGGGATCGCCGTGTTGGG
CAGCAGTGGGTAACCATAGGTCGCTTATCTCGCGTATAGTTGTGCGCGCA
CTGTTGTGATTGTATCTACCCCCGCCCCCGCCCCCGACTACGGCTATGCA
TGAAATGAGAACCCCCCCCCCCATGCTCTCTCTCTCTCTCTTATCTCCCG
CCCTGTGGCCAAACGAAAAACACACAACGTAAATAGACGATCTCGGACAA
CAAGCGCAAGGCGAAGCATTGGTCGTCGGAGTTGAAGGAGCTAAGGAGGA
CGCACAAGAAGGAGGCCGAGGAATGGGGCTTGGAAGAGGAGGCTGTCGGA
AGCGATGACGATGATGAAGGTGGTGATGATGATGGCGAAGATGGTGAGGA
TGGTGATGATGATGATGGTAGTCATGGTCACGATGGTAATAGTGATGGTG
ATGACGATGATGGTATACGAAGTACATGATGACGGTGAAGATGGTGATGA
TGATGATAGTGATGATGGTGTGATGATGACGATGATGGTAATAATGATTG
GTGATGATCATGATCATGATCGTAAAGATGACGACGATGACGAGGATGAG
GGTGATGGTGAGTGATGTTTGTGGTGATGATTATGATGATGGTAATAAGG
ATGATGGGTGATGATGATGATAATACTAACATTTTTTTTGTCAACCATTG
TTATCCTCCGGCGGATGGGTAAAAACAAAGGTTCACCTCTCAAATTTCCA
CGTTTAAAAAAAATATATATATATATATATATATACGTATACATAGATAG
ATATTTGAAAGTTCTCTCTTTTCGTTTTTCAAAGCTTTTTGACCTTCTCT
CTTTCTTGTGAAGGTGGTGACGTCAGCGAGGGACAAGAAGGGGTGGATGG
AGGCGTCGAGGAGAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10261:695..4759- >mRNA_D-dudresnayi_contig10261.304.1 ID=mRNA_D-dudresnayi_contig10261.304.1|Name=mRNA_D-dudresnayi_contig10261.304.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at D-dudresnayi_contig10261:695..4759- (Desmarestia dudresnayi DdudBR16 monoicous) GTTTCCGCGTCGCTCGAGAAGGCCGAGGCGGTTGTTCAGGCCCTGCAGAA AGCTATCCTGGAGGTCGGCGGGGAGCGGCTGAAAAAGGCTGTCAAGAGAG CTGATGCGGCCTCCAAGTTTCCGCGTCGCTCGAGAAGGCCGAGGCGGTTG TTCAGGCCCTGCAGAAAGCTATCCTGGAGGTCGGCGGGGAGCGGCTGAAA AAGGCTGTCAAGAGAGCTGATGCGGCCTCCAAGGGCTTGGACGAGGCCAT GGAGGCGTTGAATCGCGTGACGGTGGATGCACAGGGGGAGAAGAGAAAGG GCGAGAAGGGTGCCAAGGACGCCGAGCGTAAGCGTAAGGACTTGGAGACT TTGAAGAAGAAGACGGGCAAGGCCGAGGCGGAGTTCGAGCCTTTGTTGAA GAAAGCCCACGAGGGGCTTGGACGAGGCCATGGAGGCGTTGAATCGCGTG ACGGTGGATGCACAGGGGGAGAAGAGAAAGGGCGAGAAGGGTGCCAAGGA CGCCGAGCGTAAGCGTAAGGACTTGGAGACTTTGAAGAAGAAGACGGGCA AGGCCGAGGCGGAGTTCGAGCCTTTGTTGAAGAAAGCCCACGAGGTGCTG GGGGCGTTCGAGACGGCGGAGAAGGACGTGAAGACCAAGACGGAAGAGCT TCACGAGATCTCCGCAAAGTACGAGAAGGCGAAGGTGGAGGAGGACAAGA TTCGTGGGGTGCTGGTCGACATTTCACACCAACTTGACGAGTACGCCAAG GTGCTGGGGGCGTTCGAGACGGCGGAGAAGGACGTGAAGACCAAGACGGA AGAGCTTCACGAGATCTCCGCAAAGTACGAGAAGGCGAAGGTGGAGGAGG ACAAGATTCGTGGGGTGCTGGTCGACATTTCACACCAACTTGACGAGTAC GCCAAGACGATCTCGGACAACAAGCGCAAGGCGAAGCATTGGTCGTCGGA GTTGAAGGAGCTAAGGAGGACGCACAAGAAGGAGGCCGAGGAATGGGGCT TGGAAGAGGAGGCTGTCGGAAGCGATGACGATGATGAAGGTGGTGATGAT GATGGCGAAGATGACGATCTCGGACAACAAGCGCAAGGCGAAGCATTGGT CGTCGGAGTTGAAGGAGCTAAGGAGGACGCACAAGAAGGAGGCCGAGGAA TGGGGCTTGGAAGAGGAGGCTGTCGGAAGCGATGACGATGATGAAGGTGG TGATGATGATGGCGAAGATGGTGGTGACGTCAGCGAGGGACAAGAAGGGG TGGATGGAGGCGTCGAGGAGGTGGTGACGTCAGCGAGGGACAAGAAGGGG TGGATGGAGGCGTCGAGGAG back to top
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