mRNA_D-dudresnayi_contig1026.301.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1026.301.1
Unique NamemRNA_D-dudresnayi_contig1026.301.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1026.301.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.880e-11
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    1 LAQGLPLDKLDGVLATVTSKVDQAVQSLDETIHEIFGDQTEAGDGQHLHLADPSLGSSKTSNAAASRRVLKDGWVELHGGVPSQSPTLLDASQDA 285
            LA G   ++LD VLATV+SKVD+AVQSLDETI++IFGD  +  +  +   A+ S G+             +DGWVEL GG    +  LL   + A
Sbjct:  375 LANGNWNEQLDDVLATVSSKVDKAVQSLDETINDIFGDNDDVDNDDNKAKANSSGGT-------------RDGWVELRGGTAKSASALLHPEEAA 456
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BLAST of mRNA_D-dudresnayi_contig1026.301.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.000e-8
Identity = 38/89 (42.70%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:    1 LAQGLPLDKLDGVLATVTSKVDQAVQSLDETIHEIFGDQTEAGDGQHLHLADPSLGSSKTSNAAASRRVLKDGWVELHGGVPSQSPTLL 267
            LA G   ++LD VLATV+SKVD+AVQSLDETI +IFGD                 G+             +DGWVEL GG    +  LL
Sbjct:  350 LANGNWNEQLDDVLATVSSKVDKAVQSLDETIQDIFGDDXXXXXXXXXXXXXXXGGT-------------RDGWVELRGGTAKSASALL 425
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1026.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE74_9PHAE9.880e-1143.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU4_ECTSI5.000e-842.70Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1026contigD-dudresnayi_contig1026:24378..25834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.4238408-CDS-D-dudresnayi_contig1026:24377..246201622927526.4238408-CDS-D-dudresnayi_contig1026:24377..24620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1026 24378..24620 -
1690556792.7007716-CDS-D-dudresnayi_contig1026:24377..246201690556792.7007716-CDS-D-dudresnayi_contig1026:24377..24620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1026 24378..24620 -
1622927526.4397085-CDS-D-dudresnayi_contig1026:25765..258341622927526.4397085-CDS-D-dudresnayi_contig1026:25765..25834Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1026 25766..25834 -
1690556792.7120574-CDS-D-dudresnayi_contig1026:25765..258341690556792.7120574-CDS-D-dudresnayi_contig1026:25765..25834Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1026 25766..25834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1026.301.1prot_D-dudresnayi_contig1026.301.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1026 24378..25834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1026.301.1

>prot_D-dudresnayi_contig1026.301.1 ID=prot_D-dudresnayi_contig1026.301.1|Name=mRNA_D-dudresnayi_contig1026.301.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=104bp
LAQGLPLDKLDGVLATVTSKVDQAVQSLDETIHEIFGDQTEAGDGQHLHL
ADPSLGSSKTSNAAASRRVLKDGWVELHGGVPSQSPTLLDASQDASGRRS
RKGS
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mRNA from alignment at D-dudresnayi_contig1026:24378..25834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1026.301.1 ID=mRNA_D-dudresnayi_contig1026.301.1|Name=mRNA_D-dudresnayi_contig1026.301.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1457bp|location=Sequence derived from alignment at D-dudresnayi_contig1026:24378..25834- (Desmarestia dudresnayi DdudBR16 monoicous)
TTAGCGCAAGGTCTCCCGCTAGATAAGCTCGACGGCGTTCTTGCAACCGT
GACCTCTAAGGTCGACCAGGTGATACGCGTCCGGCCGGGTGCTTTGTGCT
TCGCAACGCGTGTATGTGCGTGTGTATATGTAAAGCGATAAGAACATCTT
TTTAAAAACAGAACTGGTAAAAAAAAAGCGAGCTTAAAAAAAAACGAGAG
CTTTCAAAGAGCTTAGTACAGAGAATCGAGGATTAACTTACTTTCTACCC
ATCCGCCGAAGGATAACAATGGTTGAAAAACAAAAGTATGTGTGTGCCGA
TGAAACGGTGCCGTGCTGTTTTTTTTGACGACACAACGGGGGTGGCAAGT
AGATGCGTGGTCTAGGCAGCTATCGTAGTTGCCTCTGTCTGGCGGAAGTT
TGGGGTTCGTATCTAGGTGTAAAACAGCATGTCATGTGTCTGTGTCCTTT
TCCGTCGCGGAAAGCGCGAGAGCGTGAGTTACGCAACATTCCATTAAAGT
GGACGAGCTATGGAAGTGCCGAATCCTGTGCGCATGTACCAGCAGTAAAA
AACCCAAGGCATGAACCAGCGTAGGTGGAGCGAATTACACGCCTGCGACC
ACGGCTTGCTCAGACAGGCACGCTGAGTGATAAGTAGAGGAGCTCCTAAG
TATGAGCTATCATCTATCATAGACTCCCAGGTCACAGTGATCGATAACAA
AACAAGGACAATGTTCACAGCCCCCATCCAGCGGGAATTGTTTCGATGTC
GTCTTGGGACGCTAGCCCAAACACAAGACCAATCGGCTACACTGTGTTTT
CAGAGTAGACGCACAAAGCGCAGATCTTGACACGGTGGTAGGCTCGTTCA
ATCCTCTTTGTCCTTGCATGTAGGGAGATATGTCGGCCTTCTCTCCTCCG
TCTGTGGTTTTTGATGTCTCCTGTCAGGCGTTATTTGGGATGGGTCAATT
CAATCCCGGGCGTGCCTTGGTGTGCCTCGGGGGGAGTCGTAGTTCATCCC
CCTGGTAAAAACCGCATTGCAAACGCGGATCAGTGTGCCTCCATTTTATT
TCTAGTCTCAAGGGTGCGGTAATGCGGCCATGGTGGAGGGCAAGTTTTGT
GTTCTGCCGCAGTCAATCACGCCTCCATCGTGGTCACCTACCCATTGTAA
TACTGACCCCTCCCCGCCCCCCTCCCCTCTCCAACACGCCGCTCTTACTT
GCTCCCGTATGCAGGCCGTACAGTCTTTGGACGAGACAATCCACGAAATT
TTTGGCGACCAGACCGAAGCGGGCGACGGTCAACATCTCCACCTCGCTGA
CCCATCGTTAGGATCATCCAAGACGTCGAACGCCGCCGCCTCGAGGAGAG
TGCTCAAAGACGGCTGGGTGGAACTGCACGGCGGCGTACCCTCGCAGTCC
CCCACCTTGCTCGATGCTTCGCAGGACGCTAGCGGGCGGCGCAGTCGCAA
GGGGAGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1026:24378..25834-

>mRNA_D-dudresnayi_contig1026.301.1 ID=mRNA_D-dudresnayi_contig1026.301.1|Name=mRNA_D-dudresnayi_contig1026.301.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at D-dudresnayi_contig1026:24378..25834- (Desmarestia dudresnayi DdudBR16 monoicous)
TTAGCGCAAGGTCTCCCGCTAGATAAGCTCGACGGCGTTCTTGCAACCGT
GACCTCTAAGGTCGACCAGTTAGCGCAAGGTCTCCCGCTAGATAAGCTCG
ACGGCGTTCTTGCAACCGTGACCTCTAAGGTCGACCAGGCCGTACAGTCT
TTGGACGAGACAATCCACGAAATTTTTGGCGACCAGACCGAAGCGGGCGA
CGGTCAACATCTCCACCTCGCTGACCCATCGTTAGGATCATCCAAGACGT
CGAACGCCGCCGCCTCGAGGAGAGTGCTCAAAGACGGCTGGGTGGAACTG
CACGGCGGCGTACCCTCGCAGTCCCCCACCTTGCTCGATGCTTCGCAGGA
CGCTAGCGGGCGGCGCAGTCGCAAGGGGAGCGCCGTACAGTCTTTGGACG
AGACAATCCACGAAATTTTTGGCGACCAGACCGAAGCGGGCGACGGTCAA
CATCTCCACCTCGCTGACCCATCGTTAGGATCATCCAAGACGTCGAACGC
CGCCGCCTCGAGGAGAGTGCTCAAAGACGGCTGGGTGGAACTGCACGGCG
GCGTACCCTCGCAGTCCCCCACCTTGCTCGATGCTTCGCAGGACGCTAGC
GGGCGGCGCAGTCGCAAGGGGAGC
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