mRNA_D-dudresnayi_contig10249.292.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10249.292.1
Unique NamemRNA_D-dudresnayi_contig10249.292.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10249.292.1 vs. uniprot
Match: D7G482_ECTSI (Lipase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G482_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 7.390e-41
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:   13 HKVDDQGHQIFFKHGVRLVEAAEIQLEALGRPATITVFIIPYLLLALALWLDMGQLDVTSRVYPPSAEACNSSGVCSWTVTDAPVYNSFLTLKGHF--RMVDGLLPSSSS 336
            H  ++  HQIF+KHGVRLVEAAEIQLE+LG PAT  VFI+PYLLLALALWLDMG+LDVTSR++PPS  AC+ SGVCSW VT AP++NSFL +KG F   +VDGL+  S S
Sbjct:   28 HGEENNRHQIFYKHGVRLVEAAEIQLESLGSPATYAVFILPYLLLALALWLDMGKLDVTSRLFPPSGNACDDSGVCSWNVTGAPIHNSFLVVKGDFDFEVVDGLVTPSPS 137
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BLAST of mRNA_D-dudresnayi_contig10249.292.1 vs. uniprot
Match: A0A6H5KLM1_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM1_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.550e-40
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   22 DDQGHQIFFKHGVRLVEAAEIQLEALGRPATITVFIIPYLLLALALWLDMGQLDVTSRVYPPSAEACNSSGVCSWTVTDAPVYNSFLTLKGHF--RMVDGLLPSSSSTATPPAI 357
            ++ G QIF+KHGVRLVEAAEIQLE+LG PAT  VFI+PYLLLALALWLDMG+LDVT R+YPPS  AC+ SGVC+W VT AP++NSFL +KG F   +VDGL+  S S    P +
Sbjct:    8 NETGRQIFYKHGVRLVEAAEIQLESLGSPATYAVFILPYLLLALALWLDMGKLDVTPRLYPPSGNACDDSGVCNWNVTGAPIHNSFLMVKGDFDFEVVDGLVTPSPSDGVAPGV 121
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10249.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G482_ECTSI7.390e-4169.09Lipase domain protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5KLM1_9PHAE2.550e-4065.79Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10249contigD-dudresnayi_contig10249:5034..10651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G482
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons4
Model size382
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10249.292.1prot_D-dudresnayi_contig10249.292.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10249 5034..10649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.6449451-CDS-D-dudresnayi_contig10249:5033..50641622927525.6449451-CDS-D-dudresnayi_contig10249:5033..5064Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 5034..5064 +
1690556792.4016147-CDS-D-dudresnayi_contig10249:5033..50641690556792.4016147-CDS-D-dudresnayi_contig10249:5033..5064Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 5034..5064 +
1622927525.6554384-CDS-D-dudresnayi_contig10249:8328..84371622927525.6554384-CDS-D-dudresnayi_contig10249:8328..8437Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 8329..8437 +
1690556792.4131403-CDS-D-dudresnayi_contig10249:8328..84371690556792.4131403-CDS-D-dudresnayi_contig10249:8328..8437Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 8329..8437 +
1622927525.671589-CDS-D-dudresnayi_contig10249:8808..89431622927525.671589-CDS-D-dudresnayi_contig10249:8808..8943Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 8809..8943 +
1690556792.4236207-CDS-D-dudresnayi_contig10249:8808..89431690556792.4236207-CDS-D-dudresnayi_contig10249:8808..8943Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 8809..8943 +
1622927525.6826768-CDS-D-dudresnayi_contig10249:10546..106491622927525.6826768-CDS-D-dudresnayi_contig10249:10546..10649Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 10547..10649 +
1690556792.4408674-CDS-D-dudresnayi_contig10249:10546..106491690556792.4408674-CDS-D-dudresnayi_contig10249:10546..10649Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10249 10547..10649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10249.292.1

>prot_D-dudresnayi_contig10249.292.1 ID=prot_D-dudresnayi_contig10249.292.1|Name=mRNA_D-dudresnayi_contig10249.292.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=126bp
KSSGHKVDDQGHQIFFKHGVRLVEAAEIQLEALGRPATITVFIIPYLLLA
LALWLDMGQLDVTSRVYPPSAEACNSSGVCSWTVTDAPVYNSFLTLKGHF
RMVDGLLPSSSSTATPPAIDPTTGDA
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mRNA from alignment at D-dudresnayi_contig10249:5034..10651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10249.292.1 ID=mRNA_D-dudresnayi_contig10249.292.1|Name=mRNA_D-dudresnayi_contig10249.292.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5618bp|location=Sequence derived from alignment at D-dudresnayi_contig10249:5034..10651+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGTCTTCGGGGCACAAGGTTGACGATCAAGGTGATGGGTGACGGTGTTG
GGTGTGATCTGATTGTATGTGTATTGATTGTTGCGGTGTCTGTTTTCGAG
AGAGGAATGTGTATGCGACGACGGCGCGACGGCGCGCTTCGCGCTTTCGT
CTTTTTTGTTTGTTTGATAGGTATCTTACGCGTAAGTACTTGTGTTGTGA
TTCGTCGTGATTGGTTTTTGTTGAGGAAGGGGTTGGGGAGTGCCCCCTCC
CAAGATGTGGCAAAAACGTAAAGAGCAACCAAATGCCCGAGGTGTTTCTA
TTAAGGCGTGGGAACGGTGCTCCGTCTTGAAAGGGATGCGTGGTCAATTA
TTGCCAAATGGCTACAGTAAGGCAGGCAACAAATGACTACCCTCCCCCCT
CGCCCTCCTCCCTCCCCTCCTTCTCAATTTCCATGGTTATACGTCAGGTT
ATTGGAACTCCTTGTAGCACTCGCACTTGTATTCATCCCCCACAACAGGA
GTGCATACGAAGATTTTTCCCCAAGCGTATCACACGTGTTTCCGTTGCGG
ACTACTGTTGTATCAACCATTGTGTTGGGCGCGCCGTTGTTTGTGCATGC
GAGCGCCAATATCTAGTCCTTCGCGGTACTCGGAGTGTTGGGAACACCCA
CTGAATGTGCAGCATTTGGCGTACCATACCCCGGGGGAAATAATGAAATA
ATACGGACCTGTGGCGGCCGGTTCACCTTCATACACAGACCTCTACGTTA
TTATACTAGTTTATCTATTGGGGCTAGGGTAAGTGTTGGGGTTTTTTCTA
TTTTATTAATTTTATTTTATTATTTTTCATTTGTATACTAGTTTTGGTGT
CGTATATTCAACGCCTCCCCAAGAGATCCGCACACCTGCCTCCACCATAC
CGAGGCTTGTTAACCATTTTGTCGCAAAAAAATGGTTATGGAAGTCTTTA
CTCTAGCTCTACCTCTAACCCTAACTCTAACCGGAACAAACTGGAACCCA
AACCCCATTGCCCCTAGAATATTTTTAAAGCTCCCAAGAATAATCTTTGG
CCAACGGAATGCTAGAATTTACGTGTTATATCAACCGTTTTTTTCGACCA
AATTACAAAGGGGTTGTTTTATCAATTCTTCGAAAAAAAATGGTTTGACA
TACACTACTGTGTATTTTTTTTTGCTTTATTTGCTTTGTTCTTCCTTCTG
GAGCGTTATTGTGCCGGGTTTTGTGACCACGGGCGAGATCTTTTGAGATG
AGCTAATGTGAGAAACAACAAATGTGAGAAACAACAACAACTATACTGCA
TAATAGCAAAGAGGATTAACTCTACAGCTAACCGCTATCCCTAATCGAAT
AGCACATTGAGATTGCTATTCTCTCGTACGCAGTGTACATCAATCATTTT
TTCGAAGAATTGGTAAACACTGCTGTACTCAAATGGCATACGAGTACACT
ACTGACCATACCCGCAAGGTGTGTCCAATGAAACTGATCCCTTGGCACAT
CATTTTTGGCGTACCAGCGTAAGGGTAGTGGCTACCAGTATGCCTGCCAT
TGGGGCGTTTTTCTCCGCTGGGTGACTATCTCCTTAGGCCTGATGCTGCA
GTGGGAGCACCCGGGCGACCGACATACTATCGGCAGCAAACATGTATTGA
CCAATTAAGGGGGGGGGGGGGGGGGCGTCGAACGCGGGGCAACGCCGTGG
GTGCCTACTGGTATTTTTGATGGTTGGACGATGTGAGCGGGAGGGGGCGC
ACGCTGGTTGTGAGCCGTGATGGCGGCTCTGAAAGTGACGACGACTCTTT
TCAAAGTAATGTTTGTGTTGTGCGTTTTCGTGACGACGATCATCTATGAT
GCACTTTGTCCACGGCTTGCTCAGACAGGCACGCTGAACTCCTCTGAGCC
GGACCGGGAAGTGTTACATGATGGATCTGATTACATTAGATGTGTGATTG
GTTTGTGTGACAGCTCGTCTTATTTCGCCGAGCATGTGCTCTTACGCACA
CTCATTCGCTCCCCCGCCAGACGTGGGAACCTCAGAAGAACGCCTGTAGG
AGGAGTCGAACTCACGTTCTTGCGGGTCGACAGCAAATGTACTCACCCCA
CCTTTGAGGCATGCTGCAATAGGGAGGGGGGGGGGGGGGGGGGGCACCCA
AAAAAACGACTTTTGACAAAAAACAATTGTACATGCAGCCCGATATGCAA
TCCCTTGGGCCAGGTACACCACGAAAAACAATTGCAACACGAGTGATATT
TGAAAGATATGGGGTAGTTCTTCAGCTGAGGATCCCCATCAGCCAGAAAA
GTAGGGCCCAAATGCCCCCCCCCCCCCTTACCGTAGCATAGCTCTGTGGT
AGATAGACCGTTCAGGGGGCAACGCGCGAAATTACCCTCAAAATTAACCT
GCAGAGCCTGGGTTGACCCAGGGGAGTCACTGCGTTGTACCTTATCTGAG
GACCGATATATTCCGAGCGACCGATATAAACCTGACCCCAACGTTTCCTG
CGTTGAACGCACAGAAGTCCAGTTGACCGCTTGCTTTAAGGAACAGAAAA
TAAATGAAAGTCGCCTTGAGGGGAAATTGCTCGGAAATAAGGAAAATAAC
AAAAGAAAATCAATCGCCATTGGGCGATTTTCGTTCTTTTTTCCTTGTTG
CAAGTGGTCTAATGCTGATTGGCCAAGGGCCTCCCCGTTTACAACCATTG
TGGCCTAATAGGAAAGATCCGGGAAACATATTCGGCTCAGCAGCAGCATT
TTTTGTGTATTTTTTCGTGCGGAAGCCGGTTATTTGGAGCTGGACGGGCG
GCGTGGTAGTGGAACTGGTTGATGGCTGTGATTTAATCGGCAGGGCGCAG
ATGTCCGGTGCATGGGAGTGTTCCAATGTGTGGTCGGTCCACTGGTTGAT
GCGCTTTTGGGCAGATTTTTTTCTAGAATTTTTCTTGCCCAAATTGTGTG
TTTCCGTGAGAAAGAAAGAAGCAGCCGTGGCGGCGACGGGCGCGATAAGA
TGGTTATGGGAGTACACATATAACATGGCATTATTGGACAGACTGACAGA
TAGACAGATACGTAAATAAGCATGACCGCCTACATGATAGTATACTATCA
TAGTTACTATGTACCGAGAAGCGCAAGGATAGAATCAAGCTCTATCCACT
CGCACCCCTTCCTACCTGTAATCCACGCGTACGCCGTAAACCCTGCTCTT
CGTAGAGACCTGTGCTCATACTTTATTCGGGAAACATTACGTCAGTTATT
TAAGTTACTGGTACTGAACCGCCTACCTGTGCGCGTAAAAACCAGGCCAC
CAGATTTTTTTCAAGCATGGAGTTCGATTGGTGGAGGCGGCGGAGATTCA
GCTGGAGGCCTTGGGGCGGCCTGCGACCATCACGGTGTTTATCATCCCAT
ACCTGTACGTGCCCCGCGTATGCCTCACTCCTGACGCGCCCCCCCCCCCG
CTTGTCACCCTTCATGCGAACCGCCGAACACCTCACAGCGCTTCGCGCTT
GGTGCACGCGATGTCTGCCTGGTCGGTGAAAACCCGACGTGCTCCGTCCT
GGCATTGTAGGGATGCGAGCGTCTATGGTCATACGACTACGGCCATGCAT
GAAATGAGTACTCATTTCAGTAAGCTTCGCAATTGTGTAGGCGGGATCTT
TTTTTTACTCCCTATACTTGGAAGTATAGCGTGGTCGTGAGAATGAGGAT
TAGTGTGGAGATGACCTTTGTATGACGGCAACCCTCATTCTACGCCTCTC
GCGTCTCACGAAAACGAAACAAAAGGCTTCTTGCTCTGGCGCTGTGGCTG
GACATGGGACAGCTGGACGTTACGTCGCGGGTGTACCCCCCGTCTGCAGA
GGCATGCAACAGTTCCGGAGTCTGCAGCTGGACGGTTACCGACGCTCCCG
TGTACAACAGGTGTGACCCGGGGAGATAATTACCGTACAAGTATGGTCGA
AGTTGATATTTTTTTGAAATCATTACTAGTGCATTTGGGATAAAGCTCGT
TATGCTGGGTTGCACGCCTTGGGTTCTTATTGAGTTTTGTTTTGTTTTGC
TTTTTTTTTTTTTGTCAACCATTGTTATCTTCTGGCGGACGGGTATAAAT
ATTAATCTTTAGCTCCACATAATTCCATAATTCCACACGGTTCAACTTTT
TTTTATTTTTTATTTTTTTTTTATTACCTGCCAGACAGGAGGCCGTGCGT
ATTTTTTTTTGTTTGTTGTTGTATAGATGGAGATGACTAGGTCATTGCAC
ACAGCGATTTTTACAAACTAATCGGCTGGGGCCTAATATATATATACTTC
GAAGTATATTTTTTGTCGCGTGTGATTCACCCCTCCCCCCCCCTCCGGAT
CGCTCCATCCCAGCAATGGTCAAGGGTGCTGATTGGTCAATGGTCAACGA
CGATGGCGTGGTGTTATCATAAGTACCCCCTCTCCACGACTATCCCCCTC
CCCATTTTGTTGATGTTGTCCATGACGACGTTTGAGGGGTACAAGGCAGA
CGCGACAGAAAGGATAGAAGGAAGGGAAAGACTAGCGTTAAAAACCTAGG
TGGAAGGGGAAGAACATTTAGAGATATACGGGAGGGTAGGAGAAGAAGAG
AAAGGCTTGAAAGAATATCTACACGGCCCAATGGACTACGCGAAAATGCT
GAAACTGCAATTTCGTGTAGGGGACCTGGACTTGCCAGAAAGAAGAAAGA
GATATACCAGTAGTCCGGAGCAGGAGGAAGAAGATACACGCCTTCGCCGT
TGTGGCAAGGCCGAAGAGAGTAGACCTCACATAGTGGGAGAATGTGAACT
ATACAGTGAGGAACGGGATGTGTTGGAGGAGATGAGGAAAATAGACGAAT
GTGACATGGAGAAGTTTGACACGCTAGATATTAGCTACAAAAGGTGAAGC
AGCAAGGGAATAAGATGGGCAAAAAGTGTTTGTGTTAAGACATGGCAAAG
CGTAAAGAACGCCCAAATGTTGGAGGTGTCTCTATTAGGAATAGAAGCGG
TGCTCCGTCTCGAAGGGGATGCGTGGTCAATAGTCAAATGACTGAGAAAG
CAACCAATGAGTACGCCCCCCCCCCCCCCCCCCCCCAACCGCCGATGTAT
TTCCTACTTGACATTTGCAACAATGCGAGGCTCGCGTCTATGTGATACAT
TTTCATGAGTACTCCTCCCCCGAGCCGCCTTATCAACCATTGTTGTTTTC
GAGTATATGAATAGTAACAACGTGGGCTGTTGAGCAGTTCGGGAAATTCT
GTATATAACTAACCCTATGAAGTATATAACCCTAACGAACAAACACACTG
AAAATAGTAGGAAGCCAAGACCTTTCTGAAGATCAGTCCGCAACGCTTAA
AAACTTCTCTAAAGATCCGTCCGTCCTGCGAAAACGCTTAGCCTAACCCC
CCCGCCCCCCCCCTTTTTGTTTGTTTCCGTCCAACTTACAACAACGCTTA
ACCTACTTCCAAATTCTTTGGTTGCTTTTTGCTGGTTTTGCTGTTTGTTT
TCTTGTTGCGCAGTTTTCTGACGTTGAAAGGCCACTTTAGGATGGTGGAT
GGCCTATTGCCTTCCTCATCGTCGACCGCAACGCCCCCCGCCATAGATCC
GACAACGGGTGACGCGCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10249:5034..10651+

>mRNA_D-dudresnayi_contig10249.292.1 ID=mRNA_D-dudresnayi_contig10249.292.1|Name=mRNA_D-dudresnayi_contig10249.292.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at D-dudresnayi_contig10249:5034..10651+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGTCTTCGGGGCACAAGGTTGACGATCAAGAAGTCTTCGGGGCACAAGG
TTGACGATCAAGGCCACCAGATTTTTTTCAAGCATGGAGTTCGATTGGTG
GAGGCGGCGGAGATTCAGCTGGAGGCCTTGGGGCGGCCTGCGACCATCAC
GGTGTTTATCATCCCATACCTGCCACCAGATTTTTTTCAAGCATGGAGTT
CGATTGGTGGAGGCGGCGGAGATTCAGCTGGAGGCCTTGGGGCGGCCTGC
GACCATCACGGTGTTTATCATCCCATACCTGCTTCTTGCTCTGGCGCTGT
GGCTGGACATGGGACAGCTGGACGTTACGTCGCGGGTGTACCCCCCGTCT
GCAGAGGCATGCAACAGTTCCGGAGTCTGCAGCTGGACGGTTACCGACGC
TCCCGTGTACAACAGGCTTCTTGCTCTGGCGCTGTGGCTGGACATGGGAC
AGCTGGACGTTACGTCGCGGGTGTACCCCCCGTCTGCAGAGGCATGCAAC
AGTTCCGGAGTCTGCAGCTGGACGGTTACCGACGCTCCCGTGTACAACAG
TTTTCTGACGTTGAAAGGCCACTTTAGGATGGTGGATGGCCTATTGCCTT
CCTCATCGTCGACCGCAACGCCCCCCGCCATAGATCCGACAACGGGTGAC
GCGTTTTCTGACGTTGAAAGGCCACTTTAGGATGGTGGATGGCCTATTGC
CTTCCTCATCGTCGACCGCAACGCCCCCCGCCATAGATCCGACAACGGGT
GACGCG
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