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Homology
BLAST of mRNA_D-dudresnayi_contig10245.290.1 vs. uniprot
Match: D7FMC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC6_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.180e-41 Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 1
Query: 1 GVFRSLIGGVTNMIATTDGLAETQDALLATTRGLLEELRMYDTARQAQAIDGRADKIRETCAALSRVGGRLEALRRRAEVLEAELKADGSVAGNSLGELRL 303
G+FRSLIGGVT+MIATTD LA TQD LLAT+RGLLEELR++DTARQA AI+ RADKIR+TCAAL RV RL ALRRRA+VLEAEL+ADG VAG+ + EL L
Sbjct: 17 GIFRSLIGGVTDMIATTDRLARTQDDLLATSRGLLEELRLHDTARQADAIEARADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSELCL 117
BLAST of mRNA_D-dudresnayi_contig10245.290.1 vs. uniprot
Match: A0A6H5J974_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J974_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.400e-41 Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 1 GVFRSLIGGVTNMIATTDGLAETQDALLATTRGLLEELRMYDTARQAQAIDGRADKIRETCAALSRVGGRLEALRRRAEVLEAELKADGSVAGNSLGELRL 303
G+FRSLIGGVT+MIATTD LA+TQD LLAT+RGLLEELR++DTARQA AI+ RADKIR+TCAAL RV RL ALRRRA+VLEAEL+ADG VAG+ + +L L
Sbjct: 11 GIFRSLIGGVTDMIATTDSLAQTQDDLLATSRGLLEELRLHDTARQADAIETRADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSDLCL 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-17_003470.1 |
| Exons | 3 |
| Model size | 353 |
| Cds size | 270 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927525.4462812-UTR-D-dudresnayi_contig10245:5119..5166 | 1622927525.4462812-UTR-D-dudresnayi_contig10245:5119..5166 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10245 5120..5166 - |
| 1690556792.3177023-UTR-D-dudresnayi_contig10245:5119..5166 | 1690556792.3177023-UTR-D-dudresnayi_contig10245:5119..5166 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10245 5120..5166 - |
| 1622927525.518636-UTR-D-dudresnayi_contig10245:8325..8361 | 1622927525.518636-UTR-D-dudresnayi_contig10245:8325..8361 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10245 8326..8361 - |
| 1690556792.3554919-UTR-D-dudresnayi_contig10245:8325..8361 | 1690556792.3554919-UTR-D-dudresnayi_contig10245:8325..8361 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig10245 8326..8361 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10245.290.1 >prot_D-dudresnayi_contig10245.290.1 ID=prot_D-dudresnayi_contig10245.290.1|Name=mRNA_D-dudresnayi_contig10245.290.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=90bp
MIATTDGLAETQDALLATTRGLLEELRMYDTARQAQAIDGRADKIRETCA
ALSRVGGRLEALRRRAEVLEAELKADGSVAGNSLGELRL* back to topmRNA from alignment at D-dudresnayi_contig10245:5120..8361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10245.290.1 ID=mRNA_D-dudresnayi_contig10245.290.1|Name=mRNA_D-dudresnayi_contig10245.290.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3242bp|location=Sequence derived from alignment at D-dudresnayi_contig10245:5120..8361- (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGTGTTCCGGAGTTTGATCGGAGGTGTTACTAACATGATCGCCACGAC
AGACGGGCTCGCTGAGACACAGGATGCCCTCTTGGCGACAACCCGAGGAC
TGCTGGAAGGTGACCTGTTTTTCTTTCGTTTTTTTCTTCTTTTAAAGGTT
ACACCTATTATAATACGCTTGTATAAAAACAGTTAAAAGCAAGTAGTCTA
ATGCACTAGCCGTGACGTTTCAAACCGATTGGGGAGCCAGAGGATGATGG
CCAACTTCACTGAATTCGATCTACACCTATATTGCGTTTGGATAAAAAAA
TAACAAGTAAGAAATGCATGAGACAGGGGTGGCCCAATGGTATAGTGGTT
AGGGTGTTCGCCTCTGTTGGCGGAAGTTGGGGGTTCGATCCCCGGTGGCA
CTTTTCTGTGCCATCTTTTCGTCGCGGAAAATGCGAGAGCGTGAGTAAGT
ACAATTCGACGAAAGTCGACGAGGGAAGAAAGTGCTGCTCTCTTCTCGCG
ACGAAAATGTAGGCATGTACCGTAGTGGGAAGGCGGGAGGAGCGCCTGCT
ATGTGACCCCGGATCTGAGTTACGAAACAAGATGGAGCTAGAGAAAGAAT
AGGGCGAAGACAATAAAAGGGACGAAAAAAAAAAAAAAAAAAAGAACAAA
GAAGTATCGAAATACTTGAAAAGCCAGAGAATGATCGTTANNNNNNNNNN
AAGAAAAAGAAAAAGGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAATGAGCTATGACGTTTCGAACTGGTTGAGGAGCCAGAGGATGATCGTC
AACTTCACTGACTTCGGTTTTATTATTACTTTCGTCCGCCGGAAGAGCAA
AAATAAAGCTTAGCTCTACATAATTTCTAATTTCCACTTGGTTCTCTTAT
GTTTTTTGTAACGTCTCTTTTTTTTTTCAAGTGACTTCGGTCGCTATTGT
ACGTACACACATGCACGCAGTGGTTTGATTTGATGCTGTCCTTTTTTCGT
GCTCTGTTGCTGTCCTTCTTTGTTTGCTGTCGTTGTTGCTGATGCTGTTG
CTGCTGTTGTCTCGCCAGAGCTGAGGATGTACGACACTGCCCGTCAGGCG
CAGGCTATCGACGGTCGAGCTGATAAGGTGCCTCAGCGCGCCGTTCATTG
ATTGATTGATTGATTTTTTGTTTGATTGATTGATTCGTCATTGATTGAGA
GTTTGATTCACTGATTATTCATTAACCCTTTCATCCTTCATCCCTTTTGA
CGCATTCATCTCTTCGTTAATTCGCTCACTAATGCGCTTATCTATTTCTT
CACTCATGCATTTATCCATTGTTTTTTATTGATTAATGAACTCATTGTTT
CGTTGTTTTATGAACCCATTGATACGTTGATTAATGAACTCATTGCTATA
TTGATTAATTCACCGAGTGATTTCATTGATAGGTCGACTGATTCATTAAT
TCATTAGCACATTGTCAGTCTTTGCCTATATCCAAACAAGGTTCTGTCGT
GTGCGGCTATATAGGGCAGAAAATCCTGAAACGACTGGAGAAACACTACC
ACACCCCGTCGTGGAAACGCAAAAGTGCATACCGTTGTCATGCTAGTTCT
GTTGTAGCGTAGCAGATGCCGCTCGCTTCTCTTTTGACGAAAACGACAAG
ATCTTGCTTGGCGATAAACTTTGATGCCGTGAGGAAAACCACGAGTTCCT
TGTTTCGCATTCGTCCCGTCCTCGAAGCGTTGCCGTGTTTTGCATGCGAC
GACAGCCAACGTCCCCCATCCCCTTGTGTGTTATGTGTGTGTGTGTATGT
GTATGTATGGGTTTCTACGAAAGCTTTCACGTAAACGAACTAGGGTATGT
TGTTGCGCAGTTTGTTTCTTCTTTCAACGTTCAAAAACGAAGCGCGGGAG
TATGTATCATTATTCGGCGATCGTGCCGCGAGATGCCCCCCGAAACAGTA
GGTTTAGCAATGAATGATGAATGATGATGTAGGACGGAACTTTACAGGAA
CTTTACAGAGGTTTTGACTTGCTATTAGTATAGGTGTGTTCGTTAGGGTT
CAATTTAGGGTCAGTGGTAGAATTTTCCGAAACTGCTGAACAGCCCACGT
TGGTACTAATCATATAATAAAACGAGCATCCTAAAGATCTGTCCTACAAA
ACAAAGCGCTAAGGCGGCTCCCCCGAAGATTTGCCAGAAGGATGTGATAT
CGGTGTGATACGGCGTATACTTACACATGTCCCTACGTAAGCAGGTTGCC
GTAAGGGTGCATGTCAACTCACGTCTTGTGTTACACTCTTTCTTGTTATT
AGCTTTTTAGCCGTTCTCTCTCCTTAAGCTTCCAAGGCTAAGAGCACCGC
CCCGAGGCTCGCACGTGTCCCACGATATAACCTAAAGATGTTGCTGAAAA
AAGCTACAAGAATGCCTCCTAGGCAAAACGAAACCCGACACATGTCTGTG
ATGGAATCGGGTACTAGTATAGGAGGATAAAATTGGCAAACGCGATTGGG
AGACGTACGTCTTTTAATTGTCTTGTGTGGTCTAGTAGTTTAAGCCCGAT
CCCTACAATTCGGTAGACTTTACAATGTGTTTGGGGGCTGTTCGTGGATA
CTCCCTTCTTATTGGCGGAGGGTTGTTTTTACTTGCTGTTAGTATAGTGT
GGTCGTTAGCTTAAGGTTAGGGTTAGTTCTAGAAAATGTTCCGGGCCGCT
GAACTGAACTGCTGAACAGCCCACGCTGGTACACTGTTAGTATAATAAAA
CGAAATGCCTGGAGACCCCCCGGAGGAACAAGTTGTAAAGTAGGCCCCTA
AAATTTCAAAAACCAACTAGAAGACTCCGTAACACACACGCATCGCCCCG
CGTCCCCCCCCCCCGTGCGTCCGGCCGGCCGGACGCCGCCCATCACCCAC
AAAGATGTCGGTTGACGGTCAAATGTCAGAAGCCGTCAAGGCCTCTCTTG
ACGTTAATATACTAGTTTTAGTGTAGGGCTTCCTTGACTGACCGTCCGCC
AAGGGTTAAAACTGACGTCAACCGACATCTTTGATCACGCATGCGCATGC
CCCGCAGATTCGTGAGACGTGCGCGGCGCTATCGAGGGTGGGGGGTCGAC
TTGAAGCCCTCAGACGGCGAGCGGAGGTGCTTGAAGCGGAGCTCAAGGCT
GACGGCAGCGTAGCCGGAAACAGCTTGGGGGAGCTCCGACTGTAGGCTTT
TTTTAGTTTTTTTTGTTATCAAGTGTGGTGGAGTGTTGGGGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10245:5120..8361- >mRNA_D-dudresnayi_contig10245.290.1 ID=mRNA_D-dudresnayi_contig10245.290.1|Name=mRNA_D-dudresnayi_contig10245.290.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at D-dudresnayi_contig10245:5120..8361- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCGCCACGACAGACGGGCTCGCTGAGACACAGGATGCCCTCTTGGC
GACAACCCGAGGACTGCTGGAAGATGATCGCCACGACAGACGGGCTCGCT
GAGACACAGGATGCCCTCTTGGCGACAACCCGAGGACTGCTGGAAGAGCT
GAGGATGTACGACACTGCCCGTCAGGCGCAGGCTATCGACGGTCGAGCTG
ATAAGAGCTGAGGATGTACGACACTGCCCGTCAGGCGCAGGCTATCGACG
GTCGAGCTGATAAGATTCGTGAGACGTGCGCGGCGCTATCGAGGGTGGGG
GGTCGACTTGAAGCCCTCAGACGGCGAGCGGAGGTGCTTGAAGCGGAGCT
CAAGGCTGACGGCAGCGTAGCCGGAAACAGCTTGGGGGAGCTCCGACTGT
AGATTCGTGAGACGTGCGCGGCGCTATCGAGGGTGGGGGGTCGACTTGAA
GCCCTCAGACGGCGAGCGGAGGTGCTTGAAGCGGAGCTCAAGGCTGACGG
CAGCGTAGCCGGAAACAGCTTGGGGGAGCTCCGACTGTAG back to top
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