mRNA_D-dudresnayi_contig10243.287.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10243.287.1
Unique NamemRNA_D-dudresnayi_contig10243.287.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10243.287.1 vs. uniprot
Match: D7FNL5_ECTSI (Short-chain alcohol dehydrogenase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-10
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:  112 AAACGRTVVVTGADGGIGTSFCNHYASKGDRVFACR 219
            AAA  RTVVVTGADGGIG+SFC HYASKGD+VFACR
Sbjct:    5 AAAGRRTVVVTGADGGIGSSFCKHYASKGDQVFACR 40
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10243.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNL5_ECTSI2.190e-1086.11Short-chain alcohol dehydrogenase-like protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10243contigD-dudresnayi_contig10243:5747..5965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2880.D7FNL5
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.2579079-CDS-D-dudresnayi_contig10243:5746..59651622927525.2579079-CDS-D-dudresnayi_contig10243:5746..5965Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10243 5747..5965 +
1690556792.2673333-CDS-D-dudresnayi_contig10243:5746..59651690556792.2673333-CDS-D-dudresnayi_contig10243:5746..5965Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10243 5747..5965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10243.287.1prot_D-dudresnayi_contig10243.287.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10243 5747..5965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10243.287.1

>prot_D-dudresnayi_contig10243.287.1 ID=prot_D-dudresnayi_contig10243.287.1|Name=mRNA_D-dudresnayi_contig10243.287.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=73bp
MKYSTARGAYVTALVVYLSTVACLVSSFLSTPPLTTMAAACGRTVVVTGA
DGGIGTSFCNHYASKGDRVFACR
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mRNA from alignment at D-dudresnayi_contig10243:5747..5965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10243.287.1 ID=mRNA_D-dudresnayi_contig10243.287.1|Name=mRNA_D-dudresnayi_contig10243.287.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at D-dudresnayi_contig10243:5747..5965+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGTACTCCACCGCCAGGGGCGCATACGTGACTGCCTTAGTCGTGTA
CCTGTCGACGGTTGCGTGTTTGGTATCGTCCTTTTTGTCTACGCCACCTC
TTACTACGATGGCAGCAGCTTGCGGTAGGACTGTCGTGGTGACCGGAGCA
GACGGAGGCATAGGGACCTCGTTTTGCAACCACTATGCCAGTAAAGGCGA
CCGCGTCTTCGCTTGCAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10243:5747..5965+

>mRNA_D-dudresnayi_contig10243.287.1 ID=mRNA_D-dudresnayi_contig10243.287.1|Name=mRNA_D-dudresnayi_contig10243.287.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig10243:5747..5965+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGTACTCCACCGCCAGGGGCGCATACGTGACTGCCTTAGTCGTGTA
CCTGTCGACGGTTGCGTGTTTGGTATCGTCCTTTTTGTCTACGCCACCTC
TTACTACGATGGCAGCAGCTTGCGGTAGGACTGTCGTGGTGACCGGAGCA
GACGGAGGCATAGGGACCTCGTTTTGCAACCACTATGCCAGTAAAGGCGA
CCGCGTCTTCGCTTGCAGGATGAAGTACTCCACCGCCAGGGGCGCATACG
TGACTGCCTTAGTCGTGTACCTGTCGACGGTTGCGTGTTTGGTATCGTCC
TTTTTGTCTACGCCACCTCTTACTACGATGGCAGCAGCTTGCGGTAGGAC
TGTCGTGGTGACCGGAGCAGACGGAGGCATAGGGACCTCGTTTTGCAACC
ACTATGCCAGTAAAGGCGACCGCGTCTTCGCTTGCAGG
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