mRNA_D-dudresnayi_contig10242.285.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10242.285.1
Unique NamemRNA_D-dudresnayi_contig10242.285.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10242.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10242contigD-dudresnayi_contig10242:4566..5236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size671
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10242.285.1prot_D-dudresnayi_contig10242.285.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10242 4694..5047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.9822152-UTR-D-dudresnayi_contig10242:4565..46931622927524.9822152-UTR-D-dudresnayi_contig10242:4565..4693Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10242 4566..4693 +
1690556792.1447496-UTR-D-dudresnayi_contig10242:4565..46931690556792.1447496-UTR-D-dudresnayi_contig10242:4565..4693Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10242 4566..4693 +
1622927525.025573-UTR-D-dudresnayi_contig10242:5047..52361622927525.025573-UTR-D-dudresnayi_contig10242:5047..5236Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10242 5048..5236 +
1690556792.1633446-UTR-D-dudresnayi_contig10242:5047..52361690556792.1633446-UTR-D-dudresnayi_contig10242:5047..5236Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10242 5048..5236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.995771-CDS-D-dudresnayi_contig10242:4693..50471622927524.995771-CDS-D-dudresnayi_contig10242:4693..5047Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10242 4694..5047 +
1690556792.1543884-CDS-D-dudresnayi_contig10242:4693..50471690556792.1543884-CDS-D-dudresnayi_contig10242:4693..5047Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10242 4694..5047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10242.285.1

>prot_D-dudresnayi_contig10242.285.1 ID=prot_D-dudresnayi_contig10242.285.1|Name=mRNA_D-dudresnayi_contig10242.285.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=118bp
MCFLRRGIASSCLQRDLTEAWCLANRYTGAGGGGMMRTGKKVSQITATSK
ISAFFSAEAHACCRSMMPSTHTRPCRGLKHRLRRERSRTYVSETYIYSSR
PRWWVVRSFGEQHREPE*
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mRNA from alignment at D-dudresnayi_contig10242:4566..5236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10242.285.1 ID=mRNA_D-dudresnayi_contig10242.285.1|Name=mRNA_D-dudresnayi_contig10242.285.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=671bp|location=Sequence derived from alignment at D-dudresnayi_contig10242:4566..5236+ (Desmarestia dudresnayi DdudBR16 monoicous)
GATACATAGCAAATAAACACGCCGAAATAGACGTTGCGCGGTACAGACAC
ACGACGACGAGCGAAGAACGGAGAGTATGGAGGGCATCCCGTAAATGATG
GCAGCTACCGTTTGTTTTTGGGTGTACGATGTGCTTTTTGAGGAGAGGAA
TAGCATCGTCGTGTCTTCAACGGGATCTGACTGAAGCTTGGTGCCTCGCA
AATCGCTATACTGGCGCTGGTGGTGGTGGTATGATGAGGACCGGCAAAAA
AGTATCGCAGATTACAGCAACAAGCAAGATTTCAGCGTTTTTCTCTGCCG
AAGCCCACGCCTGCTGCCGTTCGATGATGCCGAGCACGCACACACGCCCA
TGCCGGGGCTTGAAACATAGGCTAAGAAGAGAGCGGTCGAGGACGTATGT
ATCTGAGACATATATATATAGCAGCAGGCCAAGGTGGTGGGTCGTTCGTT
CGTTTGGAGAACAACATCGAGAGCCTGAATGAATGAAAAACGTCGAGTGA
GTGCGGATTAATTCATAATATTAGCGATGACTATTTTTTTCGCCCGCTTT
GCCCCGGAGCTTGCACGACGGTGGTGGCGGTTTCGCGGCGGGAGTTGTGG
CGACGGGGAGGCGAGTATGGGGAGGGCAAGCAGAGCGTTTGTTTGGGTTA
TCGATCCGTGCTCTGAGAGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10242:4566..5236+

>mRNA_D-dudresnayi_contig10242.285.1 ID=mRNA_D-dudresnayi_contig10242.285.1|Name=mRNA_D-dudresnayi_contig10242.285.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at D-dudresnayi_contig10242:4566..5236+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTGCTTTTTGAGGAGAGGAATAGCATCGTCGTGTCTTCAACGGGATCT
GACTGAAGCTTGGTGCCTCGCAAATCGCTATACTGGCGCTGGTGGTGGTG
GTATGATGAGGACCGGCAAAAAAGTATCGCAGATTACAGCAACAAGCAAG
ATTTCAGCGTTTTTCTCTGCCGAAGCCCACGCCTGCTGCCGTTCGATGAT
GCCGAGCACGCACACACGCCCATGCCGGGGCTTGAAACATAGGCTAAGAA
GAGAGCGGTCGAGGACGTATGTATCTGAGACATATATATATAGCAGCAGG
CCAAGGTGGTGGGTCGTTCGTTCGTTTGGAGAACAACATCGAGAGCCTGA
ATGAATGTGCTTTTTGAGGAGAGGAATAGCATCGTCGTGTCTTCAACGGG
ATCTGACTGAAGCTTGGTGCCTCGCAAATCGCTATACTGGCGCTGGTGGT
GGTGGTATGATGAGGACCGGCAAAAAAGTATCGCAGATTACAGCAACAAG
CAAGATTTCAGCGTTTTTCTCTGCCGAAGCCCACGCCTGCTGCCGTTCGA
TGATGCCGAGCACGCACACACGCCCATGCCGGGGCTTGAAACATAGGCTA
AGAAGAGAGCGGTCGAGGACGTATGTATCTGAGACATATATATATAGCAG
CAGGCCAAGGTGGTGGGTCGTTCGTTCGTTTGGAGAACAACATCGAGAGC
CTGAATGA
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