mRNA_D-dudresnayi_contig1024.283.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1024.283.1
Unique NamemRNA_D-dudresnayi_contig1024.283.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1024.283.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 6.350e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 MVNVAKNKCANECCTTQPSYGVAGSKKREFCAQHAKQGM 117
            MV+V   +C +  CT +PS+G  GSKK+EFCAQHA QGM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1024.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMB1_ECTSI6.350e-558.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1024contigD-dudresnayi_contig1024:6468..8781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1610
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1024.283.1prot_D-dudresnayi_contig1024.283.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1024 6468..7598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.8325176-CDS-D-dudresnayi_contig1024:6467..75981622927524.8325176-CDS-D-dudresnayi_contig1024:6467..7598Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1024 6468..7598 +
1690556792.0935757-CDS-D-dudresnayi_contig1024:6467..75981690556792.0935757-CDS-D-dudresnayi_contig1024:6467..7598Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1024 6468..7598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.8492613-UTR-D-dudresnayi_contig1024:7598..76391622927524.8492613-UTR-D-dudresnayi_contig1024:7598..7639Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1024 7599..7639 +
1690556792.1033444-UTR-D-dudresnayi_contig1024:7598..76391690556792.1033444-UTR-D-dudresnayi_contig1024:7598..7639Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1024 7599..7639 +
1622927524.8640268-UTR-D-dudresnayi_contig1024:8343..87811622927524.8640268-UTR-D-dudresnayi_contig1024:8343..8781Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1024 8344..8781 +
1690556792.1121418-UTR-D-dudresnayi_contig1024:8343..87811690556792.1121418-UTR-D-dudresnayi_contig1024:8343..8781Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1024 8344..8781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1024.283.1

>prot_D-dudresnayi_contig1024.283.1 ID=prot_D-dudresnayi_contig1024.283.1|Name=mRNA_D-dudresnayi_contig1024.283.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=377bp
MVNVAKNKCANECCTTQPSYGVAGSKKREFCAQHAKQGMVNVVYKKCANE
GCTKKSSYGVAGSKKQEFCAQHAKEGMVNVVKKSCAYHTCTMQPSYGIEG
SKKPDFCAQHAKQDMINVLHKICASQHCTKHPHYGLERSRKREFCAHHAK
QGMVRLSAVKRANQSYGDKSPSNGVEGSIDKSKCPAQHDLNGVVGIHNKE
SSRKGCSNSPLFGVEENAKQLFCVQRVETGIGCLDGGSSSGVSGGGVQYR
SSPPANGNSNLIGVMECNRDYPANSSVIEKNPLDTIGTGISRKRTRRNDN
RMVPDLSQAAPSKAHRVGPSFSSGLGLTATSHVSMPVMEVKGLSTKSTAS
VEGAVTSEDWNEPQFSPESGVTIKME*
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mRNA from alignment at D-dudresnayi_contig1024:6468..8781+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1024.283.1 ID=mRNA_D-dudresnayi_contig1024.283.1|Name=mRNA_D-dudresnayi_contig1024.283.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2314bp|location=Sequence derived from alignment at D-dudresnayi_contig1024:6468..8781+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTCAATGTCGCCAAAAATAAATGCGCGAACGAGTGTTGCACCACGCA
GCCGTCATATGGCGTAGCAGGCAGCAAGAAACGAGAGTTCTGCGCCCAGC
ACGCCAAGCAGGGCATGGTCAACGTGGTGTACAAGAAATGCGCCAACGAG
GGTTGCACCAAGAAGTCGTCATATGGCGTGGCAGGCAGCAAGAAACAAGA
ATTTTGCGCCCAGCACGCCAAGGAGGGCATGGTCAACGTCGTCAAGAAAA
GCTGCGCGTACCATACTTGCACCATGCAGCCGTCATATGGCATAGAAGGT
AGCAAGAAACCCGACTTCTGCGCCCAGCACGCCAAGCAGGACATGATCAA
TGTCTTGCACAAGATTTGCGCTAGCCAGCATTGCACTAAGCATCCGCATT
ATGGCCTAGAACGTAGCAGGAAACGGGAGTTCTGCGCCCACCACGCCAAG
CAGGGCATGGTCCGCTTGTCGGCCGTTAAACGGGCTAACCAGAGTTATGG
TGACAAATCGCCGTCGAATGGCGTAGAAGGCAGCATCGACAAGTCTAAGT
GCCCCGCTCAACATGACCTGAATGGGGTGGTCGGCATCCACAACAAAGAG
AGTTCACGCAAGGGCTGCAGCAATTCGCCTTTATTTGGCGTGGAAGAAAA
CGCGAAACAGCTTTTTTGCGTCCAACGTGTGGAAACAGGCATAGGATGCT
TAGACGGCGGATCGTCCTCCGGAGTAAGCGGGGGCGGGGTACAATATCGT
AGTAGCCCCCCAGCGAACGGCAATTCAAATCTCATCGGTGTCATGGAATG
CAACCGGGATTACCCCGCAAATTCTTCTGTCATCGAGAAGAACCCTCTAG
ACACAATTGGCACGGGAATTTCCAGAAAGCGAACGCGTCGCAACGACAAT
CGTATGGTTCCGGACTTAAGTCAAGCAGCCCCCTCAAAGGCACATAGAGT
TGGGCCAAGCTTCTCTTCTGGGCTAGGCCTGACGGCCACATCACATGTGA
GCATGCCCGTTATGGAGGTTAAAGGTTTGTCAACGAAAAGCACGGCGAGC
GTTGAGGGAGCGGTGACTTCAGAGGATTGGAACGAGCCACAGTTCTCCCC
GGAATCAGGAGTGACGATTAAGATGGAATAGACGTCATCTCAGTGCGATG
ACACGTTACCCAAACGCCTCAGGTATGTTGAGACGTTATAAGGTTTGCGC
ATCAGTGCGTCGTAGTGAAAAGTCGGGATTGGGTATATGAATAATACCCT
CAGTTCTGTATGCTTGGTCCTTACACACGACGTATGACATATACTGCTGC
GGGGAGCGAAAATTGTCATACTAAAGACTAGAGAAGGTTGCCTTCGTCGA
GCGCAGTCGCACTCCCTGTTAACTTGACGAATCTGAACAATTCGTCCCTA
GTGTCTACCCGTAGCCGACAAACTGGCGCAGTCCTTGCTCAAGATGTGGC
TCTATACACAATGTTACGGTACAATCGGAAAATGGGGGTGGGGAGGGGGG
CGTGTGCTTTGGATTGGTATTGAGCGCACGCCTGTTTATTGTTTCTCCGT
TATCGTGTATTTTGGCAGCAACCGAACGATGTTTTATGTTGTTCCGGACC
CCCCGATAGGTTGAAATAACAACAATCTTTATTCGCCCTGCAGACCGTGG
GTTGAAAACTGCTACGAGTATTTTCGAGGCGTATTGTTGCGTCTCCATAA
TAATGTCATGCTGGCTGGTATCTACTGTTCGGTTTGGCTCAGAACGTCAA
CGTCACCCAACGTGTCGCCCTTGCTCTTCCCGCAATTTTCGAGTCTGCCG
TGTCGATGTATCCCGCGTACACCCAGTATCTGTCGTCGCCTCGTCCTCAT
TATTGTTATTGTTTGACCATTTGCAGGTGCGTTTGCAGGTGACTGATACC
AGTGCGGGCATTGTCATCCCTTGGACTGACCAGAACGGCGACTACTCTTC
TACATGTGACACTTGACGGGATTGGTTTTTAACAGTGCAGTAAAAATAGT
AGCGAGTGTAGACGGCCGTAGTATGGAGGGGGGCGAATATATACAACGTC
CAGTAGTGTCTGAGAAGTCAACTGACCCAAGGCGGACTTCTGACGGAAGA
TTTCGCTGTCATAAATCGTTGCTCAAACGTAATAATATTAATAGCTCACT
TTAAGACGACTTTTAGGACACCCGGAATGGTGCCGTGTGCCATCTGAAAG
ACAGATTGAGGTCGCTGGGCGCTTCAGATAATTTTTAGCATATTTAGTTT
GACGTGTCTTAGATATTGTACACCGCGACAGTCTTATACGACTAGTAGCC
GTAGTTTCCTCGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1024:6468..8781+

>mRNA_D-dudresnayi_contig1024.283.1 ID=mRNA_D-dudresnayi_contig1024.283.1|Name=mRNA_D-dudresnayi_contig1024.283.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at D-dudresnayi_contig1024:6468..8781+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTCAATGTCGCCAAAAATAAATGCGCGAACGAGTGTTGCACCACGCA
GCCGTCATATGGCGTAGCAGGCAGCAAGAAACGAGAGTTCTGCGCCCAGC
ACGCCAAGCAGGGCATGGTCAACGTGGTGTACAAGAAATGCGCCAACGAG
GGTTGCACCAAGAAGTCGTCATATGGCGTGGCAGGCAGCAAGAAACAAGA
ATTTTGCGCCCAGCACGCCAAGGAGGGCATGGTCAACGTCGTCAAGAAAA
GCTGCGCGTACCATACTTGCACCATGCAGCCGTCATATGGCATAGAAGGT
AGCAAGAAACCCGACTTCTGCGCCCAGCACGCCAAGCAGGACATGATCAA
TGTCTTGCACAAGATTTGCGCTAGCCAGCATTGCACTAAGCATCCGCATT
ATGGCCTAGAACGTAGCAGGAAACGGGAGTTCTGCGCCCACCACGCCAAG
CAGGGCATGGTCCGCTTGTCGGCCGTTAAACGGGCTAACCAGAGTTATGG
TGACAAATCGCCGTCGAATGGCGTAGAAGGCAGCATCGACAAGTCTAAGT
GCCCCGCTCAACATGACCTGAATGGGGTGGTCGGCATCCACAACAAAGAG
AGTTCACGCAAGGGCTGCAGCAATTCGCCTTTATTTGGCGTGGAAGAAAA
CGCGAAACAGCTTTTTTGCGTCCAACGTGTGGAAACAGGCATAGGATGCT
TAGACGGCGGATCGTCCTCCGGAGTAAGCGGGGGCGGGGTACAATATCGT
AGTAGCCCCCCAGCGAACGGCAATTCAAATCTCATCGGTGTCATGGAATG
CAACCGGGATTACCCCGCAAATTCTTCTGTCATCGAGAAGAACCCTCTAG
ACACAATTGGCACGGGAATTTCCAGAAAGCGAACGCGTCGCAACGACAAT
CGTATGGTTCCGGACTTAAGTCAAGCAGCCCCCTCAAAGGCACATAGAGT
TGGGCCAAGCTTCTCTTCTGGGCTAGGCCTGACGGCCACATCACATGTGA
GCATGCCCGTTATGGAGGTTAAAGGTTTGTCAACGAAAAGCACGGCGAGC
GTTGAGGGAGCGGTGACTTCAGAGGATTGGAACGAGCCACAGTTCTCCCC
GGAATCAGGAGTGACGATTAAGATGGAATAGATGGTCAATGTCGCCAAAA
ATAAATGCGCGAACGAGTGTTGCACCACGCAGCCGTCATATGGCGTAGCA
GGCAGCAAGAAACGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGCATGGT
CAACGTGGTGTACAAGAAATGCGCCAACGAGGGTTGCACCAAGAAGTCGT
CATATGGCGTGGCAGGCAGCAAGAAACAAGAATTTTGCGCCCAGCACGCC
AAGGAGGGCATGGTCAACGTCGTCAAGAAAAGCTGCGCGTACCATACTTG
CACCATGCAGCCGTCATATGGCATAGAAGGTAGCAAGAAACCCGACTTCT
GCGCCCAGCACGCCAAGCAGGACATGATCAATGTCTTGCACAAGATTTGC
GCTAGCCAGCATTGCACTAAGCATCCGCATTATGGCCTAGAACGTAGCAG
GAAACGGGAGTTCTGCGCCCACCACGCCAAGCAGGGCATGGTCCGCTTGT
CGGCCGTTAAACGGGCTAACCAGAGTTATGGTGACAAATCGCCGTCGAAT
GGCGTAGAAGGCAGCATCGACAAGTCTAAGTGCCCCGCTCAACATGACCT
GAATGGGGTGGTCGGCATCCACAACAAAGAGAGTTCACGCAAGGGCTGCA
GCAATTCGCCTTTATTTGGCGTGGAAGAAAACGCGAAACAGCTTTTTTGC
GTCCAACGTGTGGAAACAGGCATAGGATGCTTAGACGGCGGATCGTCCTC
CGGAGTAAGCGGGGGCGGGGTACAATATCGTAGTAGCCCCCCAGCGAACG
GCAATTCAAATCTCATCGGTGTCATGGAATGCAACCGGGATTACCCCGCA
AATTCTTCTGTCATCGAGAAGAACCCTCTAGACACAATTGGCACGGGAAT
TTCCAGAAAGCGAACGCGTCGCAACGACAATCGTATGGTTCCGGACTTAA
GTCAAGCAGCCCCCTCAAAGGCACATAGAGTTGGGCCAAGCTTCTCTTCT
GGGCTAGGCCTGACGGCCACATCACATGTGAGCATGCCCGTTATGGAGGT
TAAAGGTTTGTCAACGAAAAGCACGGCGAGCGTTGAGGGAGCGGTGACTT
CAGAGGATTGGAACGAGCCACAGTTCTCCCCGGAATCAGGAGTGACGATT
AAGATGGAATAG
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