mRNA_D-dudresnayi_contig10236.280.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous
Overview
Homology
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA) HSP 1 Score: 172 bits (436), Expect = 2.710e-54 Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 Query: 7 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLG+VEE+VTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT+ Sbjct: 1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.710e-47 Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 1 Query: 1 INMSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 + MS++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+EIDE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT Sbjct: 17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 108
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.240e-46 Identity = 73/89 (82.02%), Postives = 85/89 (95.51%), Query Frame = 1 Query: 10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 S++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+E+DE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT Sbjct: 13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 101
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.000e-45 Identity = 71/90 (78.89%), Postives = 86/90 (95.56%), Query Frame = 1 Query: 10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279 S+D PLDLIRLS++ERI+VKC+G+RELRGKLHAFD+HLNM+LG+VEE VTT EIDEET+EEI++TS+R +EMLFVRGD+VILVSPPLRTA Sbjct: 4 SVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTA 93
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA) HSP 1 Score: 147 bits (372), Expect = 4.050e-44 Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = 1 Query: 7 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279 + ++ PLDLIRLSIDER++VKC+GDRELRGKLHA+DQHLNMVLG+VEE VTT E+DEETEEEIV+ + R+++MLFVRGDIV+LVSPPLRTA Sbjct: 32 VKMEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDIVVLVSPPLRTA 122
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI) HSP 1 Score: 146 bits (369), Expect = 4.780e-44 Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1 Query: 10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 S++ PLDLIRLS+DERI VKC+G+RELRGKLH++DQHLNMVLGDVEE VTT E+DE+T EEIV+TSKR+IEMLFVRGD+VILVSPP+RT Sbjct: 4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0AM25_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AM25_9STRA) HSP 1 Score: 144 bits (364), Expect = 6.910e-43 Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 1 Query: 4 NMSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279 N +++ PLDLIRLSIDER++VKC+ DRELRGKLHAFDQHLNMVLG+VEE VT+ EIDEET+EEIVK + R + MLFVRGDIV+LVSPPLRTA Sbjct: 32 NPTMEEPLDLIRLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLGEVEETVTSYEIDEETDEEIVKKATRQVGMLFVRGDIVVLVSPPLRTA 123
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC) HSP 1 Score: 141 bits (356), Expect = 4.450e-42 Identity = 66/89 (74.16%), Postives = 81/89 (91.01%), Query Frame = 1 Query: 10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 SID PLDLI+LS+DERI+VKC+GDRELRGKL A+DQHLNM+L DVEE VT+ E+D+ET EEIVK +KR +EMLFVRGD+++LV+PPLRT Sbjct: 3 SIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA) HSP 1 Score: 141 bits (355), Expect = 6.710e-42 Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1 Query: 22 PLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 P+DL+RLS+DERI VK +GDRELRGKLHA+DQHLNMVLGDVEE VTT E+DEET EEI+KTSKR IEMLFVRGD VIL+SPPLRT Sbjct: 9 PIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: B7GDI5_PHATC (U6 snRNA-associated Sm-like protein LSm3 n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDI5_PHATC) HSP 1 Score: 140 bits (354), Expect = 8.210e-42 Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 1 Query: 16 DTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276 + PLDLIRLSIDER++VKC+GDRELRGKLH +DQHLNM+LGDVEE VT+ EIDEET+E+IVK R + MLFVRGDIV+LVSPPLRT Sbjct: 2 EEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQIVKKQTRKVGMLFVRGDIVVLVSPPLRT 88 The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10236.280.1 >prot_D-dudresnayi_contig10236.280.1 ID=prot_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=92bp MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVback to top mRNA from alignment at D-dudresnayi_contig10236:944..1419- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dudresnayi_contig10236.280.1 ID=mRNA_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at D-dudresnayi_contig10236:944..1419- (Desmarestia dudresnayi DdudBR16 monoicous)back to top Coding sequence (CDS) from alignment at D-dudresnayi_contig10236:944..1419- >mRNA_D-dudresnayi_contig10236.280.1 ID=mRNA_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at D-dudresnayi_contig10236:944..1419- (Desmarestia dudresnayi DdudBR16 monoicous)back to top |