mRNA_D-dudresnayi_contig10235.278.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10235.278.1
Unique NamemRNA_D-dudresnayi_contig10235.278.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10235.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10235contigD-dudresnayi_contig10235:3791..4177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10235.278.1prot_D-dudresnayi_contig10235.278.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10235 3868..4167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.4322205-UTR-D-dudresnayi_contig10235:3790..38671622927524.4322205-UTR-D-dudresnayi_contig10235:3790..3867Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10235 3791..3867 +
1690556791.851958-UTR-D-dudresnayi_contig10235:3790..38671690556791.851958-UTR-D-dudresnayi_contig10235:3790..3867Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10235 3791..3867 +
1622927524.4541786-UTR-D-dudresnayi_contig10235:4167..41771622927524.4541786-UTR-D-dudresnayi_contig10235:4167..4177Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10235 4168..4177 +
1690556791.8701792-UTR-D-dudresnayi_contig10235:4167..41771690556791.8701792-UTR-D-dudresnayi_contig10235:4167..4177Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10235 4168..4177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.441961-CDS-D-dudresnayi_contig10235:3867..41671622927524.441961-CDS-D-dudresnayi_contig10235:3867..4167Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10235 3868..4167 +
1690556791.8613572-CDS-D-dudresnayi_contig10235:3867..41671690556791.8613572-CDS-D-dudresnayi_contig10235:3867..4167Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10235 3868..4167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10235.278.1

>prot_D-dudresnayi_contig10235.278.1 ID=prot_D-dudresnayi_contig10235.278.1|Name=mRNA_D-dudresnayi_contig10235.278.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
MYPLLAPSPCQLACPCQQSARVLRISCMALTLPPKQPSLSRKTICRPMAG
RSASVKPARRYRRERCSCLRGRNLNLGLAVLQRRGNDILTVLTSASTPR*
back to top

mRNA from alignment at D-dudresnayi_contig10235:3791..4177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10235.278.1 ID=mRNA_D-dudresnayi_contig10235.278.1|Name=mRNA_D-dudresnayi_contig10235.278.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at D-dudresnayi_contig10235:3791..4177+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTCCGCCAAAGTCCCCGGTGCCCCAGCGTTGACCAGTTCCCCTGCTAGTC
CAGGCTCTCGCTGCCGCTTGTACTTCAATGTATCCCCTGCTCGCCCCGAG
TCCGTGTCAATTAGCGTGCCCTTGCCAGCAGTCAGCCCGCGTCCTACGCA
TATCTTGCATGGCCCTTACCTTACCCCCAAAGCAACCCTCACTCTCAAGA
AAAACCATCTGCCGGCCGATGGCTGGCCGTAGCGCGTCAGTTAAACCTGC
TCGCCGGTACCGCAGAGAGAGGTGCTCCTGCTTGCGGGGGCGGAATCTTA
ACCTTGGCCTTGCCGTGCTTCAACGTAGGGGCAACGACATCCTTACCGTT
CTCACCAGCGCCAGTACACCTCGATGAGTGCTTAAAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10235:3791..4177+

>mRNA_D-dudresnayi_contig10235.278.1 ID=mRNA_D-dudresnayi_contig10235.278.1|Name=mRNA_D-dudresnayi_contig10235.278.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig10235:3791..4177+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTATCCCCTGCTCGCCCCGAGTCCGTGTCAATTAGCGTGCCCTTGCCA
GCAGTCAGCCCGCGTCCTACGCATATCTTGCATGGCCCTTACCTTACCCC
CAAAGCAACCCTCACTCTCAAGAAAAACCATCTGCCGGCCGATGGCTGGC
CGTAGCGCGTCAGTTAAACCTGCTCGCCGGTACCGCAGAGAGAGGTGCTC
CTGCTTGCGGGGGCGGAATCTTAACCTTGGCCTTGCCGTGCTTCAACGTA
GGGGCAACGACATCCTTACCGTTCTCACCAGCGCCAGTACACCTCGATGA
ATGTATCCCCTGCTCGCCCCGAGTCCGTGTCAATTAGCGTGCCCTTGCCA
GCAGTCAGCCCGCGTCCTACGCATATCTTGCATGGCCCTTACCTTACCCC
CAAAGCAACCCTCACTCTCAAGAAAAACCATCTGCCGGCCGATGGCTGGC
CGTAGCGCGTCAGTTAAACCTGCTCGCCGGTACCGCAGAGAGAGGTGCTC
CTGCTTGCGGGGGCGGAATCTTAACCTTGGCCTTGCCGTGCTTCAACGTA
GGGGCAACGACATCCTTACCGTTCTCACCAGCGCCAGTACACCTCGATGA
back to top