mRNA_D-dudresnayi_contig10233.276.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10233.276.1
Unique NamemRNA_D-dudresnayi_contig10233.276.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10233.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10233contigD-dudresnayi_contig10233:2591..3404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size814
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10233.276.1prot_D-dudresnayi_contig10233.276.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10233 2810..3232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.3745542-UTR-D-dudresnayi_contig10233:2590..28091622927524.3745542-UTR-D-dudresnayi_contig10233:2590..2809Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10233 2591..2809 +
1690556791.8240476-UTR-D-dudresnayi_contig10233:2590..28091690556791.8240476-UTR-D-dudresnayi_contig10233:2590..2809Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10233 2591..2809 +
1622927524.3962994-UTR-D-dudresnayi_contig10233:3232..34041622927524.3962994-UTR-D-dudresnayi_contig10233:3232..3404Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10233 3233..3404 +
1690556791.8422017-UTR-D-dudresnayi_contig10233:3232..34041690556791.8422017-UTR-D-dudresnayi_contig10233:3232..3404Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10233 3233..3404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.3862188-CDS-D-dudresnayi_contig10233:2809..32321622927524.3862188-CDS-D-dudresnayi_contig10233:2809..3232Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10233 2810..3232 +
1690556791.8332303-CDS-D-dudresnayi_contig10233:2809..32321690556791.8332303-CDS-D-dudresnayi_contig10233:2809..3232Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10233 2810..3232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10233.276.1

>prot_D-dudresnayi_contig10233.276.1 ID=prot_D-dudresnayi_contig10233.276.1|Name=mRNA_D-dudresnayi_contig10233.276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=141bp
MPTSIPHNPIHRNTNTHAEVIQLSGNDVTTSYCFPTTEVVTFLPDMREKK
QNFAIIKQTALTKSDFIQEGKYHAFLTSNLQRSKNQHIFFCIKNPLSRKT
NSKKRYFVTPPLLPPPPSTPAVTTEVFPQRHRTLDMTSPH*
back to top

mRNA from alignment at D-dudresnayi_contig10233:2591..3404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10233.276.1 ID=mRNA_D-dudresnayi_contig10233.276.1|Name=mRNA_D-dudresnayi_contig10233.276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at D-dudresnayi_contig10233:2591..3404+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCCATCCAGAAATTTCCCTCTCTTGCCTCCAGCTCAATCGCCCCACCG
GTACCTCCTCGTATCTAGAATTCGCAACAACGGCAAATGCTGTGCGAAAA
GCAGATAAATCAAATGAGCAAGACACCGCACCACCATGTCTTACACCGTT
GTCCAATACGTTCACCATGCAGAGAAAACTTAGCAACGATACAAAAAAAA
AAAGAACGGACGAAATTTGATGCCGACGAGCATACCACATAATCCCATAC
ACCGAAACACCAACACACATGCAGAAGTCATACAACTCAGCGGGAATGAC
GTCACGACATCCTACTGTTTTCCTACCACAGAGGTTGTTACCTTCCTACC
TGATATGAGAGAAAAAAAACAAAATTTCGCCATCATCAAACAAACAGCTC
TAACAAAAAGTGATTTCATACAGGAAGGAAAGTACCACGCTTTCCTAACG
TCCAACCTCCAGAGATCCAAAAATCAACATATTTTTTTTTGCATAAAAAA
TCCACTGTCACGAAAAACAAACAGTAAAAAACGGTACTTTGTAACGCCCC
CTCTCCTGCCCCCGCCCCCATCCACACCCGCCGTAACAACAGAGGTTTTT
CCTCAACGTCATCGCACTTTAGACATGACGTCTCCACACTAGCTTCGCCC
GGAACGGGGGTTGCGTAACAACGTCAATACAGCACAATATGTTAGGCACA
AAGCTCCCCCCCACCCCCAGGGGTTCCATATGACACCTAACATAGCAGGG
GGGGGGGGGTGCACTTGTACAGCACACAAGAAACTTCGCTTCATGGGGGG
GGTACCGGCTTACA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10233:2591..3404+

>mRNA_D-dudresnayi_contig10233.276.1 ID=mRNA_D-dudresnayi_contig10233.276.1|Name=mRNA_D-dudresnayi_contig10233.276.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at D-dudresnayi_contig10233:2591..3404+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCGACGAGCATACCACATAATCCCATACACCGAAACACCAACACACA
TGCAGAAGTCATACAACTCAGCGGGAATGACGTCACGACATCCTACTGTT
TTCCTACCACAGAGGTTGTTACCTTCCTACCTGATATGAGAGAAAAAAAA
CAAAATTTCGCCATCATCAAACAAACAGCTCTAACAAAAAGTGATTTCAT
ACAGGAAGGAAAGTACCACGCTTTCCTAACGTCCAACCTCCAGAGATCCA
AAAATCAACATATTTTTTTTTGCATAAAAAATCCACTGTCACGAAAAACA
AACAGTAAAAAACGGTACTTTGTAACGCCCCCTCTCCTGCCCCCGCCCCC
ATCCACACCCGCCGTAACAACAGAGGTTTTTCCTCAACGTCATCGCACTT
TAGACATGACGTCTCCACACTAGATGCCGACGAGCATACCACATAATCCC
ATACACCGAAACACCAACACACATGCAGAAGTCATACAACTCAGCGGGAA
TGACGTCACGACATCCTACTGTTTTCCTACCACAGAGGTTGTTACCTTCC
TACCTGATATGAGAGAAAAAAAACAAAATTTCGCCATCATCAAACAAACA
GCTCTAACAAAAAGTGATTTCATACAGGAAGGAAAGTACCACGCTTTCCT
AACGTCCAACCTCCAGAGATCCAAAAATCAACATATTTTTTTTTGCATAA
AAAATCCACTGTCACGAAAAACAAACAGTAAAAAACGGTACTTTGTAACG
CCCCCTCTCCTGCCCCCGCCCCCATCCACACCCGCCGTAACAACAGAGGT
TTTTCCTCAACGTCATCGCACTTTAGACATGACGTCTCCACACTAG
back to top