mRNA_D-dudresnayi_contig1023.272.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1023.272.1
Unique NamemRNA_D-dudresnayi_contig1023.272.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.350e-26
Identity = 51/123 (41.46%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGIL 369
            LPV     D LRYG  S++ E    HP++ +Q+S     +  K+DM +R +GS  AMRL TE    S+ +RLPGL SS + L+T++GN E++DF DF+    ++P  P+ ++H  ME+K+G+L
Sbjct:    6 LPVARQPADILRYGLTSMQQEAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIKYGLL 128          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A482SDR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDR4_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 1.940e-25
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQ--HPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLN 297
            LP+ +G VDHLR GF+ L+ E +A   HP++  Q+     A+ +KLDM+RRT+G+HMAMRLATE+  ++R RRLPGLESS+IA+ TL     ++DF DFLN
Sbjct:    6 LPILTGPVDHLRQGFQGLQLEAAATAPHPVEQAQRRGEF-AYNNKLDMIRRTYGTHMAMRLATEQMVYNRDRRLPGLESSHIAVDTLANTDATIDFKDFLN 105          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.500e-23
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGIL 369
            +P+     D +R+GF S   + SA HP++ + K+   + +  K+D+  + +GS   MR+ TE  T S+ + LPGL SS + L+T++G  E+V+F D+L+    RPE PR  +H  ME+++G++
Sbjct:    9 MPMARAPHDQMRFGFSSFAQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 131          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.740e-21
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRS--LENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            LP+    VD +R G ++    +E  A HP+Q  Q +   + + ++LD + R +G   AMRL TE++  SR+ R PGL SS + L+T++G  E+++F D LND   RP+ P + +H +ME + G+
Sbjct:    9 LPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A1X2GZ51_SYNRA (Proteasome maturation factor UMP1-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2GZ51_SYNRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.090e-19
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   16 GAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            G  D LRYG RS++ E    HPIQ+  +  + S W  KL+M RR  G H  ++L+ E++  S+ +R+P L SSN+ L  LMG  E++DF DFLND     +   L++H+ ME K  +
Sbjct:   27 GGHDALRYGTRSIKTEVLPGHPIQSRVEDWHESQWELKLNMARRAQGLHAPIKLSMERDIVSKRQRMPVLPSSNLHLDILMGQDETIDFEDFLNDPAMSTDM--LDVHAAMEKKLNL 141          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A7R9YBV5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBV5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.190e-19
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGIL 369
            LPV     D LR G          +HP++  Q +  +     K+  VR  HG   AM L  E    S+  RLPGL SSN+AL TL+ N E + F D L     RP+AP+ +LHS ME+KFG+L
Sbjct:    8 LPVLKEPRDTLRLGLGVAAERTRTKHPVEEFQMNGITRQLDEKIKTVRMLHGIGAAMDLKAEIVACSQPTRLPGLPSSNVALDTLLNNDEKIRFEDVLGREEDRPDAPKFKLHSAMEIKFGML 130          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A024ULP6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024ULP6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.240e-18
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            LP+     D +R GF+    +    H +Q L+       +  K+  V + +G   AMRL TEK    +  RLPGL SS   L T++GN +++DF D LND    PEAP+  +H  MEVK  I
Sbjct:    6 LPLLRAGPDLMRVGFQRASEDTRPVHEVQRLETHRRLRGFEGKMRSVEQIYGKAAAMRLRTEKILLEQHTRLPGLPSSRCGLDTVLGNDDTLDFTDILNDPQDSPEAPQFRVHDVMEVKLAI 127          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.690e-17
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRS-LENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            +PV  G  D +R G ++ L  E    HP++      +   ++ K+DMVRR +GS  AMRL TE+    +I+RLPGL SS +ALQT++G   ++ F D LND    P   +  LH ++E KFG+
Sbjct:    7 IPVLQGPRDQMREGLQTTLAAESRQGHPLETRLAVDD---FSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKFGL 126          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A1V9YHV6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHV6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.730e-16
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            LP+     D LR G++S   +  A H +Q L+       +  K++ V + +G   AMRL TEK    +  R+PGL SS++ L T++GN + +DF D LN+    PEA    +H  MEVK  I
Sbjct:    6 LPLLRAGPDVLRVGWQSAAQDSRAVHEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEAT-FRVHDAMEVKLAI 126          
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Match: A0A067CYH8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYH8_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 3.850e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    1 LPVYSGAVDHLRYGFRSLENEFSAQHPIQNLQKSANSSAWASKLDMVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFPDFLNDVVSRPEAPRLELHSQMEVKFGI 366
            LP+     D LR G++  + +    H +Q L+       + +K++ V + +G   AMRL TEK    +  RLPGL SS + L TLMGN +++DF D LN+    PE     +H  MEVK  I
Sbjct:    6 LPLLRAGPDVLRVGWQRADQDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEV-HFRVHDAMEVKLAI 126          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1023.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZL3_9STRA2.350e-2641.46Proteasome maturation factor UMP1 n=1 Tax=Tribonem... [more]
A0A482SDR4_9ARCH1.940e-2553.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FKB2_ECTSI7.500e-2335.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TNF3_9STRA1.740e-2137.10Proteasome maturation factor ump1 family protein n... [more]
A0A1X2GZ51_SYNRA2.090e-1941.03Proteasome maturation factor UMP1-domain-containin... [more]
A0A7R9YBV5_9STRA4.190e-1940.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A024ULP6_9STRA2.240e-1837.70Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A7S2S4B2_9STRA1.690e-1739.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9YHV6_9STRA2.730e-1636.89Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CYH8_SAPPC3.850e-1636.89Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1023contigD-dudresnayi_contig1023:22320..22857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog2880.D7FKB2
KEGG koko:K11599
KEGG Pathwayko03050,map03050
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0016043,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG3061@1,KOG3061@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1023.272.1prot_D-dudresnayi_contig1023.272.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1023 22411..22722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.856665-UTR-D-dudresnayi_contig1023:22319..224101622927523.856665-UTR-D-dudresnayi_contig1023:22319..22410Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1023 22320..22410 -
1690556791.543959-UTR-D-dudresnayi_contig1023:22319..224101690556791.543959-UTR-D-dudresnayi_contig1023:22319..22410Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1023 22320..22410 -
1622927523.9010487-UTR-D-dudresnayi_contig1023:22722..228571622927523.9010487-UTR-D-dudresnayi_contig1023:22722..22857Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1023 22723..22857 -
1690556791.5758245-UTR-D-dudresnayi_contig1023:22722..228571690556791.5758245-UTR-D-dudresnayi_contig1023:22722..22857Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1023 22723..22857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.8710685-CDS-D-dudresnayi_contig1023:22410..224841622927523.8710685-CDS-D-dudresnayi_contig1023:22410..22484Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1023 22411..22484 -
1690556791.5554783-CDS-D-dudresnayi_contig1023:22410..224841690556791.5554783-CDS-D-dudresnayi_contig1023:22410..22484Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1023 22411..22484 -
1622927523.8848443-CDS-D-dudresnayi_contig1023:22559..227221622927523.8848443-CDS-D-dudresnayi_contig1023:22559..22722Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1023 22560..22722 -
1690556791.5644066-CDS-D-dudresnayi_contig1023:22559..227221690556791.5644066-CDS-D-dudresnayi_contig1023:22559..22722Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1023 22560..22722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1023.272.1

>prot_D-dudresnayi_contig1023.272.1 ID=prot_D-dudresnayi_contig1023.272.1|Name=mRNA_D-dudresnayi_contig1023.272.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=79bp
MVRRTHGSHMAMRLATEKETFSRIRRLPGLESSNIALQTLMGNAESVDFP
DFLNDVVSRPEAPRLELHSQMEVKFGIL*
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mRNA from alignment at D-dudresnayi_contig1023:22320..22857-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1023.272.1 ID=mRNA_D-dudresnayi_contig1023.272.1|Name=mRNA_D-dudresnayi_contig1023.272.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at D-dudresnayi_contig1023:22320..22857- (Desmarestia dudresnayi DdudBR16 monoicous)
TTACCTGTATACTCTGGAGCTGTGGATCACCTTCGTTATGGTTTTAGATC TCTGGAGAATGAATTTTCTGCACAACATCCAATTCAGAATCTTCAGAAAT CTGCTAATTCGAGCGCATGGGCGTCTAAGTTAGACATGGTGCGTAGAACT CATGGTAGTCACATGGCTATGCGTCTAGCTACAGAGAAAGAGACATTTAG TCGAATCCGTAGACTTCCCGGACTTGAATCATCAAATATTGCATTGCAGA CTTTGATGGGTAACGCTGAATCCGTTGACTTTCCTGATTTCTTAAACGGT ACGATTCTTCGCTTCTATATAGTAAGTATTACTTGAAACATATATTCTAA TTATGATATTTATATTTATACAGATGTTGTCTCAAGACCAGAGGCGCCTC GTTTGGAGCTTCATTCACAAATGGAAGTGAAGTTTGGCATCTTATAAATA AGAACGGTGGGTTTGTATATAGTAGGATATTCAAATATAGTTAGCAAATA ATTTTGTTATCTAAACTGATTAATACCCGTTAATTTAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1023:22320..22857-

>mRNA_D-dudresnayi_contig1023.272.1 ID=mRNA_D-dudresnayi_contig1023.272.1|Name=mRNA_D-dudresnayi_contig1023.272.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at D-dudresnayi_contig1023:22320..22857- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGCGTAGAACTCATGGTAGTCACATGGCTATGCGTCTAGCTACAGA
GAAAGAGACATTTAGTCGAATCCGTAGACTTCCCGGACTTGAATCATCAA
ATATTGCATTGCAGACTTTGATGGGTAACGCTGAATCCGTTGACTTTCCT
GATTTCTTAAACGATGGTGCGTAGAACTCATGGTAGTCACATGGCTATGC
GTCTAGCTACAGAGAAAGAGACATTTAGTCGAATCCGTAGACTTCCCGGA
CTTGAATCATCAAATATTGCATTGCAGACTTTGATGGGTAACGCTGAATC
CGTTGACTTTCCTGATTTCTTAAACGATGTTGTCTCAAGACCAGAGGCGC
CTCGTTTGGAGCTTCATTCACAAATGGAAGTGAAGTTTGGCATCTTATAA
ATGTTGTCTCAAGACCAGAGGCGCCTCGTTTGGAGCTTCATTCACAAATG
GAAGTGAAGTTTGGCATCTTATAA
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